Wall clock time and date at job start Tue Mar 31 2020 07:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 C 1.53005 * 109.46722 * 240.00074 * 2 1 3 5 5 C 1.53002 * 117.49532 * 128.74292 * 4 2 1 6 6 C 1.53004 * 117.49716 * 60.08863 * 4 2 1 7 7 N 1.46494 * 109.47214 * 120.00486 * 2 1 3 8 8 C 1.46496 * 120.00253 * 59.99761 * 7 2 1 9 9 C 1.50695 * 109.47340 * 269.99930 * 8 7 2 10 10 H 1.07998 * 119.99801 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00115 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99977 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00167 * 359.97438 * 11 9 8 14 14 H 1.48508 * 109.46932 * 90.00010 * 13 11 9 15 15 H 1.48496 * 109.47344 * 209.99884 * 13 11 9 16 16 H 1.48503 * 109.47199 * 330.00393 * 13 11 9 17 17 C 1.34782 * 119.99924 * 239.99683 * 7 2 1 18 18 O 1.21278 * 119.99976 * 179.97438 * 17 7 2 19 19 C 1.50697 * 119.99720 * 359.97438 * 17 7 2 20 20 C 1.52998 * 109.47001 * 185.93623 * 19 17 7 21 21 H 1.08996 * 109.44116 * 306.09055 * 20 19 17 22 22 C 1.53079 * 109.44032 * 66.01055 * 20 19 17 23 23 C 1.53413 * 108.28069 * 168.31840 * 22 20 19 24 24 O 1.42825 * 108.38771 * 295.26825 * 23 22 20 25 25 C 1.35839 * 117.87885 * 49.06628 * 24 23 22 26 26 C 1.39158 * 118.49820 * 163.06727 * 25 24 23 27 27 C 1.37969 * 120.21192 * 179.77731 * 26 25 24 28 28 C 1.38293 * 119.96418 * 359.97438 * 27 26 25 29 29 C 1.38100 * 119.97996 * 0.09944 * 28 27 26 30 30 C 1.38367 * 121.81382 * 342.99268 * 25 24 23 31 31 H 1.09001 * 109.46560 * 299.99745 * 1 2 3 32 32 H 1.09000 * 109.47610 * 59.99702 * 1 2 3 33 33 H 1.08998 * 109.47090 * 180.02562 * 1 2 3 34 34 H 1.08997 * 115.55269 * 274.41699 * 4 2 1 35 35 H 1.09000 * 117.49981 * 0.02562 * 5 4 2 36 36 H 1.09002 * 117.49538 * 145.01618 * 5 4 2 37 37 H 1.08996 * 117.49874 * 214.97620 * 6 4 2 38 38 H 1.08999 * 117.49764 * 359.97438 * 6 4 2 39 39 H 1.08999 * 109.47236 * 30.00261 * 8 7 2 40 40 H 1.09003 * 109.47436 * 149.99565 * 8 7 2 41 41 H 0.97002 * 120.00135 * 180.02562 * 12 11 9 42 42 H 1.09001 * 109.47397 * 305.93427 * 19 17 7 43 43 H 1.08996 * 109.46824 * 65.93925 * 19 17 7 44 44 H 1.08998 * 109.70661 * 288.02385 * 22 20 19 45 45 H 1.08998 * 109.69891 * 48.58790 * 22 20 19 46 46 H 1.09004 * 109.67677 * 54.98566 * 23 22 20 47 47 H 1.08997 * 109.68327 * 175.50376 * 23 22 20 48 48 H 1.07988 * 119.89406 * 359.74821 * 26 25 24 49 49 H 1.08002 * 120.01431 * 179.97438 * 27 26 25 50 50 H 1.07998 * 120.01111 * 180.11651 * 28 27 26 51 51 H 1.07998 * 119.84551 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.0762 0.0040 -2.1102 6 6 1.6373 -0.1482 -2.6097 7 7 2.0184 -0.6907 1.1961 8 6 1.6645 -2.0932 1.4278 9 6 0.3831 -2.1641 2.2178 10 1 -0.1178 -1.2552 2.5169 11 6 -0.1503 -3.3892 2.5578 12 7 -1.2684 -3.4510 3.2477 13 14 0.7149 -4.9612 2.0387 14 1 1.6789 -5.3669 3.0929 15 1 -0.2891 -6.0380 1.8451 16 1 1.4428 -4.7283 0.7654 17 6 2.7933 -0.0357 2.0833 18 8 3.1972 -0.6074 3.0737 19 6 3.1578 1.4069 1.8445 20 6 4.1552 1.8641 2.9109 21 1 3.7464 1.6612 3.9007 22 6 5.4715 1.1021 2.7374 23 6 6.5364 1.7758 3.6125 24 8 6.7601 3.0955 3.1141 25 6 5.6748 3.8769 2.8757 26 6 5.8617 5.2491 2.7397 27 6 4.7847 6.0753 2.4924 28 6 3.5149 5.5394 2.3785 29 6 3.3256 4.1782 2.5144 30 6 4.4026 3.3442 2.7648 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 2.1252 -1.8046 -1.1649 35 1 3.3949 0.9948 -1.7863 36 1 3.8431 -0.6023 -2.5923 37 1 1.4581 -0.8546 -3.4202 38 1 1.0088 0.7423 -2.6145 39 1 1.5295 -2.5969 0.4707 40 1 2.4630 -2.5820 1.9861 41 1 -1.6435 -4.3129 3.4872 42 1 3.6090 1.5091 0.8575 43 1 2.2599 2.0223 1.8992 44 1 5.3405 0.0662 3.0501 45 1 5.7797 1.1343 1.6924 46 1 6.1855 1.8273 4.6432 47 1 7.4633 1.2041 3.5683 48 1 6.8527 5.6688 2.8284 49 1 4.9333 7.1399 2.3878 50 1 2.6716 6.1852 2.1830 51 1 2.3330 3.7621 2.4255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910560.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:53 Heat of formation + Delta-G solvation = -26.820359 kcal Electronic energy + Delta-G solvation = -31147.797786 eV Core-core repulsion = 27205.951289 eV Total energy + Delta-G solvation = -3941.846498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.92286 -39.48250 -37.60325 -37.53067 -35.27321 -34.50255 -32.54638 -30.75668 -30.33508 -29.89692 -29.55766 -27.54244 -24.54940 -23.84783 -23.64274 -22.64663 -22.18538 -21.67478 -20.19133 -19.83424 -18.18104 -17.94539 -17.12770 -16.87587 -16.54090 -15.85699 -15.61990 -15.24700 -14.83352 -14.69405 -14.31964 -14.18852 -14.14805 -13.81532 -13.38134 -13.24790 -13.15104 -12.71352 -12.69290 -12.51578 -12.37820 -12.10410 -11.81285 -11.75420 -11.62966 -11.50341 -11.35087 -11.21588 -10.93375 -10.89332 -10.67683 -10.55073 -10.43983 -10.33849 -10.25334 -10.09776 -9.85037 -9.46067 -9.05616 -8.79886 -8.58543 -8.20415 -7.72455 -6.08820 -4.06154 1.23259 1.35510 3.24417 3.27110 3.30788 3.32989 3.35352 3.62091 3.71704 3.97959 4.38649 4.52919 4.60769 4.72470 4.78777 4.79684 4.96540 5.02169 5.06264 5.16378 5.20372 5.22889 5.25692 5.30075 5.35504 5.36731 5.43917 5.47178 5.64522 5.66989 5.74751 5.80168 5.81958 5.86233 5.92379 5.93335 6.12276 6.15828 6.17613 6.23839 6.24845 6.39360 6.42094 6.45112 6.48301 6.71240 6.72876 6.93755 6.98521 7.34659 7.39760 7.61582 8.25236 8.47265 8.92384 8.97981 9.51955 11.04369 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.011984 B = 0.003411 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.895021 B = 8205.570909 C = 9029.931746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.169 3.831 3 H 0.079 0.921 4 C -0.158 4.158 5 C -0.183 4.183 6 C -0.173 4.173 7 N -0.584 5.584 8 C 0.216 3.784 9 C -0.520 4.520 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.872 3.128 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.510 3.490 18 O -0.540 6.540 19 C -0.132 4.132 20 C -0.029 4.029 21 H 0.096 0.904 22 C -0.156 4.156 23 C 0.063 3.937 24 O -0.320 6.320 25 C 0.134 3.866 26 C -0.153 4.153 27 C -0.092 4.092 28 C -0.154 4.154 29 C -0.084 4.084 30 C -0.148 4.148 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.122 0.878 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.700 15.733 -7.588 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.065 3.935 3 H 0.097 0.903 4 C -0.177 4.177 5 C -0.220 4.220 6 C -0.210 4.210 7 N -0.315 5.315 8 C 0.096 3.904 9 C -0.559 4.559 10 H 0.095 0.905 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.700 3.300 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.192 1.192 17 C 0.297 3.703 18 O -0.417 6.417 19 C -0.172 4.172 20 C -0.048 4.048 21 H 0.114 0.886 22 C -0.193 4.193 23 C -0.012 4.012 24 O -0.234 6.234 25 C 0.089 3.911 26 C -0.172 4.172 27 C -0.110 4.110 28 C -0.172 4.172 29 C -0.102 4.102 30 C -0.149 4.149 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.124 0.876 48 H 0.145 0.855 49 H 0.143 0.857 50 H 0.140 0.860 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.975 15.305 -7.001 20.656 hybrid contribution -0.015 -1.103 -0.260 1.133 sum 11.960 14.202 -7.261 19.937 Atomic orbital electron populations 1.22097 0.93827 1.04638 1.00599 1.20577 0.95219 0.94510 0.83230 0.90329 1.22752 1.03031 1.00433 0.91535 1.23008 0.92540 1.01810 1.04685 1.22895 0.97690 1.03213 0.97236 1.47935 1.48753 1.13884 1.20928 1.19605 0.96912 0.77342 0.96568 1.21318 1.06026 0.94489 1.34046 0.90549 1.24842 0.94762 0.98739 0.94661 1.69892 1.19780 1.25305 1.38666 0.86913 0.79731 0.83763 0.79641 1.20024 1.21171 1.19191 1.20257 0.78773 0.88085 0.83166 1.90638 1.54396 1.68922 1.27787 1.21808 1.00213 0.95113 1.00067 1.19772 0.95524 0.88982 1.00515 0.88627 1.22360 0.94142 1.02126 1.00690 1.23017 1.00525 0.80399 0.97279 1.85949 1.30561 1.26514 1.80419 1.18710 0.85799 0.90242 0.96327 1.20567 1.00006 0.90352 1.06273 1.20891 0.92217 0.99333 0.98594 1.21016 0.97249 0.95124 1.03819 1.21021 0.98329 0.93211 0.97670 1.19915 0.92788 0.96193 1.06043 0.92365 0.93096 0.89899 0.87138 0.89087 0.89179 0.88949 0.88712 0.95302 0.94787 0.92647 0.89472 0.88909 0.87866 0.91022 0.91647 0.87563 0.85531 0.85704 0.85976 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.31 37.16 0.31 -2.19 16 2 C 0.17 2.61 2.77 -67.93 -0.19 2.42 16 3 H 0.08 1.03 5.51 -51.93 -0.29 0.74 16 4 C -0.16 -2.22 5.15 -90.61 -0.47 -2.69 16 5 C -0.18 -2.09 10.18 -26.69 -0.27 -2.36 16 6 C -0.17 -1.94 9.74 -26.69 -0.26 -2.20 16 7 N -0.58 -11.35 2.39 -167.48 -0.40 -11.75 16 8 C 0.22 5.06 3.64 -5.20 -0.02 5.04 16 9 C -0.52 -14.28 8.38 -34.44 -0.29 -14.57 16 10 H 0.08 2.30 7.87 -52.49 -0.41 1.88 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 13 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 14 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 17 C 0.51 9.72 7.36 -10.98 -0.08 9.64 16 18 O -0.54 -12.26 13.88 5.56 0.08 -12.18 16 19 C -0.13 -1.87 3.21 -27.89 -0.09 -1.95 16 20 C -0.03 -0.41 2.01 -91.70 -0.18 -0.59 16 21 H 0.10 1.49 7.83 -51.93 -0.41 1.08 16 22 C -0.16 -2.05 5.09 -26.48 -0.13 -2.19 16 23 C 0.06 0.72 7.03 37.37 0.26 0.98 16 24 O -0.32 -4.14 10.27 -19.24 -0.20 -4.34 16 25 C 0.13 1.73 6.47 -39.19 -0.25 1.47 16 26 C -0.15 -1.70 9.94 -39.34 -0.39 -2.09 16 27 C -0.09 -0.89 10.04 -39.66 -0.40 -1.29 16 28 C -0.15 -1.55 10.04 -39.61 -0.40 -1.95 16 29 C -0.08 -0.97 9.08 -39.53 -0.36 -1.33 16 30 C -0.15 -1.90 5.43 -104.44 -0.57 -2.47 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.67 7.29 -51.93 -0.38 0.29 16 33 H 0.08 1.61 6.92 -51.93 -0.36 1.25 16 34 H 0.11 1.76 6.59 -51.93 -0.34 1.42 16 35 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.97 7.61 -51.93 -0.40 0.57 16 39 H 0.03 0.66 5.48 -51.93 -0.28 0.37 16 40 H 0.03 0.86 6.85 -51.93 -0.36 0.51 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.09 1.10 7.42 -51.93 -0.39 0.71 16 43 H 0.09 1.20 6.12 -51.93 -0.32 0.88 16 44 H 0.10 1.55 6.57 -51.93 -0.34 1.21 16 45 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 49 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 50 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 51 H 0.13 1.33 6.37 -52.49 -0.33 1.00 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -32.28 395.80 -10.31 -42.59 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.99 Total: 5.84 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -3.88 Total: -16.34 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.37 Total: -38.13 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.12 Total: -16.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.28 -10.31 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910560.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.769 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds