Wall clock time and date at job start Tue Mar 31 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47008 * 2 1 4 4 S 1.81395 * 109.47318 * 119.99910 * 2 1 3 5 5 C 1.76206 * 103.00004 * 58.48634 * 4 2 1 6 6 C 1.38968 * 120.06525 * 7.28439 * 5 4 2 7 7 C 1.38082 * 119.92556 * 180.20851 * 6 5 4 8 8 C 1.38386 * 120.06960 * 359.51876 * 7 6 5 9 9 Br 1.89096 * 119.92832 * 180.25602 * 8 7 6 10 10 C 1.38371 * 120.14117 * 0.23001 * 8 7 6 11 11 C 1.38090 * 120.06913 * 0.02562 * 10 8 7 12 12 C 1.50696 * 109.47131 * 240.00034 * 2 1 3 13 13 O 1.21288 * 120.00359 * 239.99858 * 12 2 1 14 14 N 1.34780 * 119.99670 * 59.99784 * 12 2 1 15 15 C 1.37102 * 119.99841 * 180.02562 * 14 12 2 16 16 H 1.08005 * 119.99982 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99697 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00222 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46932 * 359.97438 * 19 17 15 21 21 H 1.48489 * 109.47183 * 119.99850 * 19 17 15 22 22 H 1.48499 * 109.46847 * 240.00029 * 19 17 15 23 23 H 1.09003 * 109.46841 * 307.67604 * 1 2 3 24 24 H 1.09000 * 109.47293 * 67.67307 * 1 2 3 25 25 H 1.08995 * 109.47161 * 187.67701 * 1 2 3 26 26 H 1.08999 * 109.47023 * 185.41627 * 3 2 1 27 27 H 1.09002 * 109.47221 * 305.41542 * 3 2 1 28 28 H 1.09007 * 109.47439 * 65.41663 * 3 2 1 29 29 H 1.07998 * 120.04079 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.96542 * 179.79374 * 7 6 5 31 31 H 1.07999 * 119.96547 * 180.02562 * 10 8 7 32 32 H 1.08001 * 120.03181 * 180.02562 * 11 10 8 33 33 H 0.96997 * 120.00588 * 0.02562 * 14 12 2 34 34 H 0.97005 * 120.00107 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.4208 -2.4591 1.3320 6 6 0.7415 -2.8138 0.1727 7 6 0.1794 -4.0700 0.0607 8 6 0.3006 -4.9788 1.0972 9 35 -0.4645 -6.7006 0.9366 10 6 0.9808 -4.6305 2.2507 11 6 1.5406 -3.3739 2.3711 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4545 15 6 2.1632 -0.8964 -3.5740 16 1 2.7835 -1.7750 -3.4749 17 6 1.8280 -0.4214 -4.8360 18 7 1.0728 0.6473 -4.9565 19 14 2.4494 -1.3028 -6.3613 20 1 3.2737 -2.4701 -5.9571 21 1 1.2939 -1.7682 -7.1694 22 1 3.2754 -0.3704 -7.1697 23 1 -0.3633 0.6281 0.8134 24 1 -0.3634 0.3904 -0.9506 25 1 -0.3633 -1.0184 0.1373 26 1 3.1257 1.4440 -0.0970 27 1 1.5996 1.9836 -0.8375 28 1 1.7580 1.9276 0.9346 29 1 0.6507 -2.1067 -0.6386 30 1 -0.3515 -4.3452 -0.8387 31 1 1.0740 -5.3421 3.0578 32 1 2.0718 -3.1028 3.2715 33 1 1.1493 0.5390 -2.5436 34 1 0.8384 0.9787 -5.8376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071914412.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:08 Heat of formation + Delta-G solvation = -3.380845 kcal Electronic energy + Delta-G solvation = -19783.759867 eV Core-core repulsion = 16661.322835 eV Total energy + Delta-G solvation = -3122.437032 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 342.998 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.31956 -38.47648 -34.35096 -34.12023 -32.22246 -31.24418 -30.82708 -29.14747 -27.12686 -25.29382 -23.14231 -22.39864 -22.08425 -19.24135 -18.24421 -17.59728 -16.23226 -15.52459 -15.42996 -14.99041 -14.59662 -14.36781 -13.95508 -13.64939 -13.33201 -13.31982 -12.80505 -12.58963 -12.13027 -11.95685 -11.80156 -11.70066 -11.36896 -11.24219 -11.08445 -10.92138 -10.56625 -10.42789 -10.36984 -10.16943 -9.85848 -9.63305 -9.16322 -8.81885 -8.52122 -8.12554 -7.04237 -6.56928 -3.98250 1.18916 1.51644 1.69106 1.87669 2.60939 3.06229 3.19875 3.26812 3.63370 3.76047 4.04357 4.58282 4.92020 4.96772 5.03954 5.07934 5.27868 5.48169 5.58268 5.68266 5.72671 5.75844 5.83771 5.86720 6.04323 6.10358 6.22785 6.30588 6.31704 6.41854 6.48130 6.91760 7.41829 7.86691 8.40121 9.00501 9.33223 9.82309 10.59769 Molecular weight = 343.00amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.004200 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.421168 B = 6665.722262 C = 8538.056494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.069 4.069 3 C -0.125 4.125 4 S -0.067 6.067 5 C -0.050 4.050 6 C -0.097 4.097 7 C -0.076 4.076 8 C -0.100 4.100 9 Br -0.066 7.066 10 C -0.083 4.083 11 C -0.106 4.106 12 C 0.434 3.566 13 O -0.570 6.570 14 N -0.545 5.545 15 C -0.302 4.302 16 H 0.106 0.894 17 C 0.028 3.972 18 N -0.895 5.895 19 Si 0.929 3.071 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.393 0.607 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 -5.524 12.894 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C -0.184 4.184 4 S 0.181 5.819 5 C -0.164 4.164 6 C -0.121 4.121 7 C -0.098 4.098 8 C -0.183 4.183 9 Br 0.019 6.981 10 C -0.104 4.104 11 C -0.131 4.131 12 C 0.217 3.783 13 O -0.454 6.454 14 N -0.181 5.181 15 C -0.432 4.432 16 H 0.124 0.876 17 C -0.175 4.175 18 N -0.536 5.536 19 Si 0.756 3.244 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.166 0.834 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.228 0.772 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.020 -6.121 13.566 15.416 hybrid contribution -0.592 -0.050 -1.984 2.071 sum -4.612 -6.171 11.582 13.910 Atomic orbital electron populations 1.22406 0.91617 1.03834 1.03623 1.23407 0.99637 0.99915 0.95312 1.21641 1.02396 0.91320 1.03032 1.84721 1.65905 1.04054 1.27210 1.21785 0.99509 0.98416 0.96699 1.21667 0.96485 0.97214 0.96775 1.21023 0.98765 0.92638 0.97397 1.21632 1.05872 0.92128 0.98628 1.96628 1.82661 1.20348 1.98485 1.20847 0.96963 0.96309 0.96313 1.20654 1.01528 0.92680 0.98278 1.19390 0.86991 0.87712 0.84201 1.90648 1.41736 1.27569 1.85484 1.41796 1.45133 1.27285 1.03871 1.19801 1.29549 1.10988 0.82865 0.87635 1.25283 0.96556 0.96326 0.99354 1.69609 1.36086 1.22586 1.25294 0.85799 0.78620 0.79366 0.80635 1.19095 1.20580 1.20585 0.91012 0.90628 0.90993 0.91289 0.90199 0.91370 0.83415 0.85121 0.85145 0.85145 0.77243 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 7.99 37.16 0.30 -2.04 16 2 C -0.07 -1.18 0.71 -91.77 -0.07 -1.25 16 3 C -0.12 -1.85 8.33 37.16 0.31 -1.54 16 4 S -0.07 -1.12 20.26 -107.50 -2.18 -3.30 16 5 C -0.05 -0.87 5.53 -39.04 -0.22 -1.08 16 6 C -0.10 -1.78 5.96 -39.37 -0.23 -2.02 16 7 C -0.08 -1.28 9.78 -39.58 -0.39 -1.66 16 8 C -0.10 -1.50 6.23 -39.48 -0.25 -1.75 16 9 Br -0.07 -0.86 33.69 -68.01 -2.29 -3.15 16 10 C -0.08 -1.14 9.78 -39.59 -0.39 -1.53 16 11 C -0.11 -1.57 9.79 -39.37 -0.39 -1.95 16 12 C 0.43 9.56 4.41 -10.99 -0.05 9.52 16 13 O -0.57 -14.49 13.24 5.55 0.07 -14.42 16 14 N -0.55 -12.86 5.03 -10.96 -0.06 -12.92 16 15 C -0.30 -7.97 9.68 -14.93 -0.14 -8.11 16 16 H 0.11 2.96 7.16 -52.48 -0.38 2.58 16 17 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 18 N -0.90 -23.07 13.05 55.50 0.72 -22.34 16 19 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 24 H 0.07 1.14 7.36 -51.93 -0.38 0.76 16 25 H 0.07 1.12 4.72 -51.93 -0.25 0.87 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.14 7.72 -51.93 -0.40 0.74 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.15 2.98 3.30 -52.49 -0.17 2.81 16 30 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 32 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.39 8.89 6.76 -40.82 -0.28 8.61 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -28.45 313.77 -9.15 -37.60 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -3.52 Total: 11.34 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.60 Total: -12.81 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.67 Total: -35.26 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.07 Total: -14.42 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.18 Total: -3.30 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.29 Total: -3.15 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.45 -9.15 -37.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071914412.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.219 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds