Wall clock time and date at job start Tue Mar 31 2020 06:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36030 * 117.00276 * 2 1 4 4 C 1.38372 * 119.99637 * 359.97438 * 3 2 1 5 5 C 1.38554 * 120.39709 * 180.02562 * 4 3 2 6 6 C 1.37835 * 120.39623 * 359.97438 * 5 4 3 7 7 Br 1.89097 * 120.01202 * 179.97438 * 6 5 4 8 8 C 1.39966 * 119.97621 * 359.97438 * 6 5 4 9 9 C 1.47241 * 120.19496 * 179.97438 * 8 6 5 10 10 O 1.21533 * 120.00079 * 90.00213 * 9 8 6 11 11 O 1.34777 * 119.99951 * 269.72347 * 9 8 6 12 12 C 1.45202 * 116.99833 * 180.27174 * 11 9 8 13 13 C 1.53000 * 109.46625 * 180.02562 * 12 11 9 14 14 C 1.50707 * 109.46857 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99883 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00014 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00015 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99790 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47465 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46621 * 120.00159 * 18 16 14 21 21 H 1.48500 * 109.47251 * 239.99905 * 18 16 14 22 22 C 1.39340 * 119.99602 * 180.25593 * 3 2 1 23 23 N 1.39072 * 120.19372 * 359.97438 * 22 3 2 24 24 H 1.08995 * 109.47563 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47308 * 300.00252 * 1 2 3 26 26 H 1.09001 * 109.46785 * 59.99978 * 1 2 3 27 27 H 1.08000 * 119.79490 * 0.02562 * 4 3 2 28 28 H 1.08005 * 119.80128 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47630 * 300.00494 * 12 11 9 30 30 H 1.09004 * 109.46770 * 60.00898 * 12 11 9 31 31 H 1.08998 * 109.47391 * 300.00482 * 13 12 11 32 32 H 1.08996 * 109.47097 * 60.00572 * 13 12 11 33 33 H 0.97002 * 119.99980 * 180.02562 * 17 16 14 34 34 H 0.97003 * 120.00176 * 180.22790 * 23 22 3 35 35 H 0.97004 * 120.00032 * 0.23797 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2929 2.3725 -0.0005 5 6 1.9134 3.6114 -0.0011 6 6 3.2887 3.7026 -0.0006 7 35 4.1241 5.3990 -0.0020 8 6 4.0667 2.5391 0.0011 9 6 5.5363 2.6309 0.0011 10 8 6.1427 2.6702 1.0536 11 8 6.2093 2.6657 -1.1661 12 6 7.6568 2.7505 -1.0901 13 6 8.2408 2.7798 -2.5039 14 6 9.7433 2.8672 -2.4250 15 1 10.2326 2.8982 -1.4627 16 6 10.4931 2.9075 -3.5813 17 7 9.8972 2.8703 -4.7531 18 14 12.3554 3.0165 -3.4835 19 1 12.7755 3.0447 -2.0595 20 1 12.9561 1.8349 -4.1531 21 1 12.8150 4.2559 -4.1603 22 6 3.4381 1.2848 -0.0054 23 7 4.1993 0.1209 -0.0102 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2146 2.3121 -0.0005 28 1 1.3157 4.5110 -0.0019 29 1 7.9403 3.6605 -0.5612 30 1 8.0439 1.8835 -0.5546 31 1 7.9574 1.8701 -3.0331 32 1 7.8537 3.6470 -3.0390 33 1 10.4248 2.8982 -5.5666 34 1 5.1678 0.1748 -0.0106 35 1 3.7617 -0.7448 -0.0134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071922221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:12 Heat of formation + Delta-G solvation = -99.907359 kcal Electronic energy + Delta-G solvation = -21329.805587 eV Core-core repulsion = 17760.429980 eV Total energy + Delta-G solvation = -3569.375607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 343.025 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.81443 -39.68096 -37.64391 -35.98689 -35.03542 -33.33195 -31.93187 -30.49968 -29.73148 -28.95908 -27.31351 -25.35298 -23.84776 -22.24559 -21.17647 -20.55314 -18.56019 -17.83746 -17.19321 -16.93166 -16.15378 -16.08301 -15.88232 -15.58983 -15.29663 -14.68896 -14.49341 -14.03108 -13.60894 -13.18448 -12.99449 -12.53667 -12.36551 -12.06692 -11.91507 -11.60132 -11.33300 -11.22473 -11.03076 -10.76284 -10.71612 -10.37070 -10.26877 -10.25674 -9.64696 -9.63848 -9.27462 -8.75533 -8.43714 -7.61323 -6.09311 -4.13635 0.72947 1.14781 1.51607 2.30266 2.78325 3.16584 3.28174 3.35365 3.39109 3.44097 3.59520 4.38887 4.46550 4.63129 4.82331 4.86121 4.98951 5.10069 5.17859 5.27316 5.30475 5.34187 5.83147 5.94084 6.04200 6.10242 6.14187 6.63509 6.78703 6.88058 7.23515 7.50949 7.56610 7.63961 7.86697 8.12269 8.25183 8.92121 9.50718 11.02154 Molecular weight = 343.03amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.003424 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.318168 B = 8176.051719 C = 9482.403113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.063 3.937 4 C -0.141 4.141 5 C -0.114 4.114 6 C -0.040 4.040 7 Br -0.031 7.031 8 C -0.133 4.133 9 C 0.509 3.491 10 O -0.495 6.495 11 O -0.342 6.342 12 C 0.073 3.927 13 C 0.025 3.975 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.248 3.752 23 N -0.854 5.854 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.405 0.595 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.731 -1.831 10.127 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.014 3.986 4 C -0.162 4.162 5 C -0.136 4.136 6 C -0.120 4.120 7 Br 0.055 6.945 8 C -0.142 4.142 9 C 0.351 3.649 10 O -0.383 6.383 11 O -0.258 6.258 12 C 0.000 4.000 13 C -0.012 4.012 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.139 3.861 23 N -0.392 5.392 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.234 0.766 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -22.066 -1.364 10.222 24.357 hybrid contribution 0.872 -0.443 -0.006 0.978 sum -21.194 -1.807 10.215 23.597 Atomic orbital electron populations 1.23062 0.77930 1.04070 1.01469 1.85981 1.21621 1.25877 1.89601 1.18210 0.89668 0.85409 1.05304 1.21066 1.00111 0.91027 1.03951 1.20532 0.91591 0.98058 1.03388 1.21372 0.94492 0.90481 1.05701 1.96802 1.80547 1.19743 1.97415 1.18230 0.90576 0.91374 1.14014 1.20656 0.87693 0.73354 0.83221 1.90855 1.69694 1.44800 1.32938 1.86736 1.25145 1.81837 1.32071 1.23728 0.72059 1.01002 1.03196 1.19172 0.94951 0.98959 0.88106 1.21012 0.90492 1.51865 0.92969 0.92194 1.24979 0.99016 0.94913 0.95241 1.69986 1.35619 1.49797 0.97348 0.86430 0.84967 0.77721 0.78289 1.19577 1.20857 1.20825 1.16677 0.87619 0.86336 0.95492 1.42227 1.08988 1.05460 1.82554 0.88137 0.92551 0.92437 0.84148 0.84212 0.92029 0.92267 0.95379 0.95196 0.92778 0.76586 0.75981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.01 9.73 -19.84 -0.19 -3.20 16 3 C 0.06 0.71 6.70 -39.12 -0.26 0.45 16 4 C -0.14 -1.35 9.03 -39.42 -0.36 -1.70 16 5 C -0.11 -1.24 9.75 -39.61 -0.39 -1.63 16 6 C -0.04 -0.57 6.26 -39.08 -0.24 -0.81 16 7 Br -0.03 -0.46 32.64 -68.01 -2.22 -2.68 16 8 C -0.13 -2.12 5.77 -104.82 -0.60 -2.73 16 9 C 0.51 9.65 5.00 34.39 0.17 9.83 16 10 O -0.49 -10.26 16.90 -19.29 -0.33 -10.59 16 11 O -0.34 -7.16 10.23 -40.70 -0.42 -7.58 16 12 C 0.07 1.64 5.42 37.16 0.20 1.84 16 13 C 0.03 0.67 5.35 -27.88 -0.15 0.52 16 14 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 15 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 C 0.25 3.41 6.78 -83.39 -0.57 2.85 16 23 N -0.85 -10.47 8.98 32.65 0.29 -10.17 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 26 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 27 H 0.14 0.86 6.26 -52.49 -0.33 0.53 16 28 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.40 5.30 7.68 -40.82 -0.31 4.99 16 35 H 0.41 4.04 8.18 -40.82 -0.33 3.70 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -32.70 329.31 -7.65 -40.34 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.85 Total: 1.92 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.61 Total: -3.75 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 1.03 Total: -35.90 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.94 Total: -21.37 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.22 Total: -2.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.70 -7.65 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071922221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.564 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds