Wall clock time and date at job start Tue Mar 31 2020 05:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36281 * 120.27479 * 2 1 4 4 C 1.40191 * 119.56097 * 179.97438 * 3 2 1 5 5 C 1.35195 * 120.15998 * 359.97438 * 4 3 2 6 6 N 1.36181 * 120.73630 * 0.02929 * 5 4 3 7 7 C 1.35021 * 119.65263 * 179.97438 * 6 5 4 8 8 O 1.22092 * 120.52294 * 359.97438 * 7 6 5 9 9 C 1.39968 * 118.95709 * 179.97438 * 7 6 5 10 10 C 1.38121 * 118.92636 * 0.02562 * 9 7 6 11 11 C 1.50695 * 119.97518 * 179.97438 * 10 9 7 12 12 N 1.46895 * 109.47541 * 115.07853 * 11 10 9 13 13 C 1.46900 * 111.00220 * 165.88610 * 12 11 10 14 14 C 1.50707 * 109.47017 * 190.00304 * 13 12 11 15 15 H 1.07993 * 119.99774 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99731 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00402 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46914 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47138 * 119.99517 * 18 16 14 21 21 H 1.48502 * 109.46980 * 239.99868 * 18 16 14 22 22 C 1.46896 * 111.00019 * 289.84505 * 12 11 10 23 23 C 1.53008 * 109.47017 * 294.98541 * 22 12 11 24 24 C 1.53784 * 113.61147 * 271.72021 * 23 22 12 25 25 C 1.53957 * 87.01645 * 220.04259 * 24 23 22 26 26 C 1.53778 * 113.61565 * 174.11137 * 23 22 12 27 27 N 1.32387 * 120.05746 * 0.25521 * 10 9 7 28 28 C 1.33180 * 121.34393 * 359.45889 * 27 10 9 29 29 H 1.08993 * 109.47423 * 270.02204 * 1 2 3 30 30 H 1.08997 * 109.46870 * 30.02653 * 1 2 3 31 31 H 1.09003 * 109.46696 * 150.02015 * 1 2 3 32 32 H 1.07996 * 120.22066 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.92201 * 180.02562 * 4 3 2 34 34 H 1.08007 * 119.63126 * 180.02562 * 5 4 3 35 35 H 1.08008 * 120.53570 * 180.02562 * 9 7 6 36 36 H 1.09003 * 109.47303 * 355.07704 * 11 10 9 37 37 H 1.09006 * 109.47537 * 235.08262 * 11 10 9 38 38 H 1.08994 * 109.47126 * 310.00082 * 13 12 11 39 39 H 1.08993 * 109.47015 * 70.00059 * 13 12 11 40 40 H 0.97004 * 120.00290 * 180.02562 * 17 16 14 41 41 H 1.08994 * 109.47590 * 54.98460 * 22 12 11 42 42 H 1.09003 * 109.47468 * 174.98889 * 22 12 11 43 43 H 1.08992 * 112.84842 * 42.91279 * 23 22 12 44 44 H 1.08993 * 113.61638 * 334.56249 * 24 23 22 45 45 H 1.08998 * 113.61555 * 105.47125 * 24 23 22 46 46 H 1.08994 * 113.54093 * 270.81419 * 25 24 23 47 47 H 1.09001 * 113.66202 * 139.92833 * 25 24 23 48 48 H 1.08997 * 113.61566 * 254.53136 * 26 23 22 49 49 H 1.09001 * 113.61285 * 25.35363 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1769 0.0000 4 6 3.5958 1.1595 0.0005 5 6 4.2605 -0.0178 0.0016 6 7 3.5833 -1.1993 0.0015 7 6 4.2692 -2.3624 0.0021 8 8 5.4901 -2.3622 0.0021 9 6 3.5585 -3.5682 0.0025 10 6 2.1779 -3.5300 0.0019 11 6 1.3891 -4.8140 0.0018 12 7 0.6320 -4.9238 1.2558 13 6 -0.3933 -5.9715 1.1618 14 6 -1.3037 -5.8924 2.3602 15 1 -1.1370 -5.1395 3.1162 16 6 -2.3488 -6.7820 2.4919 17 7 -2.5516 -7.6993 1.5714 18 14 -3.4769 -6.6845 3.9776 19 1 -3.0381 -5.5738 4.8602 20 1 -4.8699 -6.4379 3.5262 21 1 -3.4190 -7.9647 4.7280 22 6 1.5296 -5.1661 2.3932 23 6 2.2043 -6.5295 2.2289 24 6 1.3981 -7.6924 2.8311 25 6 2.7406 -8.2617 3.3246 26 6 3.2743 -6.8197 3.2946 27 7 1.5468 -2.3662 -0.0042 28 6 2.2163 -1.2150 0.0008 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6622 2.1169 0.0004 33 1 4.1462 2.0888 0.0010 34 1 5.3405 -0.0213 0.0024 35 1 4.0814 -4.5133 0.0034 36 1 2.0714 -5.6596 -0.0859 37 1 0.6980 -4.8159 -0.8412 38 1 -0.9767 -5.8284 0.2523 39 1 0.0877 -6.9492 1.1348 40 1 -3.2871 -8.3250 1.6639 41 1 2.2902 -4.3862 2.4284 42 1 0.9543 -5.1547 3.3190 43 1 2.5422 -6.7144 1.2093 44 1 0.7298 -7.3891 3.6370 45 1 0.9066 -8.3158 2.0843 46 1 3.2247 -8.9215 2.6047 47 1 2.6930 -8.6887 4.3264 48 1 4.2953 -6.7397 2.9214 49 1 3.1206 -6.2764 4.2269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072308439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:04 Heat of formation + Delta-G solvation = 69.661324 kcal Electronic energy + Delta-G solvation = -30377.549903 eV Core-core repulsion = 26499.491394 eV Total energy + Delta-G solvation = -3878.058508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.66868 -39.09017 -38.46684 -37.57190 -35.52869 -34.77548 -32.80146 -31.98640 -30.27264 -28.31911 -27.84563 -27.21920 -25.13290 -24.99711 -24.92511 -23.13238 -22.58191 -21.95357 -19.84287 -19.06992 -18.59349 -18.44209 -17.55468 -16.62357 -16.23370 -15.57369 -15.46926 -15.19895 -14.84288 -14.58661 -14.43099 -14.20352 -13.99949 -13.88781 -13.65546 -13.19281 -12.73677 -12.62421 -12.50029 -12.21259 -12.19172 -12.02774 -11.92314 -11.80340 -11.61511 -11.15481 -11.03472 -10.72805 -10.63799 -10.53618 -10.49993 -10.27307 -10.16876 -9.95357 -9.71613 -9.65626 -9.47948 -9.29347 -9.09397 -8.38993 -7.68748 -7.12038 -5.99003 -3.97920 0.06575 0.43447 2.00533 2.10329 2.54354 3.31944 3.40333 3.44353 3.77009 3.87493 4.17729 4.29338 4.45273 4.49463 4.60332 4.76836 4.97674 5.19914 5.21019 5.27821 5.28876 5.33092 5.37416 5.42488 5.50242 5.54271 5.65756 5.67707 5.71609 5.79169 5.90807 5.98179 6.01478 6.07124 6.13938 6.22425 6.27659 6.29284 6.34560 6.40659 6.43072 6.56324 6.74797 6.82115 6.97706 7.16167 7.30458 7.46222 7.72198 7.81734 7.90557 8.11716 8.21927 8.56970 9.08409 9.64805 11.11753 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011658 B = 0.003633 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.285262 B = 7705.742333 C = 9404.437793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.087 4.087 3 C -0.058 4.058 4 C -0.165 4.165 5 C 0.086 3.914 6 N -0.428 5.428 7 C 0.508 3.492 8 O -0.548 6.548 9 C -0.334 4.334 10 C 0.238 3.762 11 C 0.092 3.908 12 N -0.517 5.517 13 C 0.187 3.813 14 C -0.494 4.494 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.076 3.924 23 C -0.141 4.141 24 C -0.111 4.111 25 C -0.151 4.151 26 C -0.133 4.133 27 N -0.501 5.501 28 C 0.383 3.617 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.011 0.989 40 H 0.259 0.741 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.716 15.371 -3.377 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.090 4.090 3 C -0.082 4.082 4 C -0.186 4.186 5 C -0.037 4.037 6 N -0.132 5.132 7 C 0.316 3.684 8 O -0.429 6.429 9 C -0.360 4.360 10 C 0.108 3.892 11 C -0.037 4.037 12 N -0.240 5.240 13 C 0.062 3.938 14 C -0.532 4.532 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.538 5.538 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.213 1.213 22 C -0.053 4.053 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.188 4.188 26 C -0.171 4.171 27 N -0.224 5.224 28 C 0.138 3.862 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.194 0.806 35 H 0.171 0.829 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.267 15.368 -3.354 18.784 hybrid contribution 0.728 -0.853 0.659 1.300 sum 10.995 14.515 -2.695 18.407 Atomic orbital electron populations 1.20666 0.87469 1.03930 1.03706 1.19747 0.98250 0.88610 1.02393 1.21376 0.93815 0.98491 0.94493 1.20928 0.94746 0.97558 1.05364 1.22232 1.00344 0.84184 0.96957 1.44435 1.08493 1.09546 1.50690 1.17192 0.88371 0.82924 0.79952 1.90951 1.12109 1.85816 1.54038 1.22639 0.94426 0.97905 1.21005 1.21704 0.90767 0.93743 0.83007 1.21091 0.96394 0.89584 0.96627 1.62299 1.12286 1.49913 0.99536 1.19937 0.88326 0.87560 0.97953 1.21073 1.11357 1.14599 1.06208 0.92144 1.24890 0.97548 0.95513 0.96304 1.69957 1.31015 1.18775 1.34008 0.86576 0.80846 0.77732 0.83085 1.19791 1.21157 1.21260 1.22072 0.94021 0.92934 0.96238 1.23084 0.97025 0.98018 0.98002 1.22910 0.94547 0.96381 1.00986 1.22945 0.99175 0.96081 1.00606 1.22830 0.97770 0.97023 0.99492 1.68883 1.33975 0.95439 1.24079 1.20598 0.78196 0.95900 0.91458 0.90095 0.91231 0.89061 0.83375 0.82788 0.80644 0.82901 0.92997 0.88953 0.95588 0.97097 0.93148 0.93602 0.89905 0.90327 0.89243 0.91250 0.91222 0.92364 0.92625 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.78 36.00 0.35 -0.62 16 2 C -0.09 -0.92 5.90 -104.40 -0.62 -1.53 16 3 C -0.06 -0.42 9.72 -39.55 -0.38 -0.80 16 4 C -0.16 -1.14 9.99 -39.93 -0.40 -1.54 16 5 C 0.09 0.87 10.08 -16.70 -0.17 0.70 16 6 N -0.43 -5.89 2.76 -65.37 -0.18 -6.07 16 7 C 0.51 8.33 7.36 -15.50 -0.11 8.21 16 8 O -0.55 -10.03 16.69 4.83 0.08 -9.95 16 9 C -0.33 -5.44 9.62 -38.98 -0.37 -5.82 16 10 C 0.24 3.98 5.33 -82.40 -0.44 3.54 16 11 C 0.09 1.63 5.24 -4.98 -0.03 1.60 16 12 N -0.52 -10.63 4.66 -237.52 -1.11 -11.74 16 13 C 0.19 4.51 4.20 -4.97 -0.02 4.49 16 14 C -0.49 -13.03 7.91 -34.44 -0.27 -13.30 16 15 H 0.06 1.63 7.10 -52.49 -0.37 1.25 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.08 1.45 4.91 -3.82 -0.02 1.43 16 23 C -0.14 -2.48 2.92 -89.80 -0.26 -2.74 16 24 C -0.11 -2.09 5.73 -25.82 -0.15 -2.24 16 25 C -0.15 -2.34 8.09 -25.82 -0.21 -2.55 16 26 C -0.13 -2.04 7.65 -25.92 -0.20 -2.24 16 27 N -0.50 -8.19 9.23 -8.56 -0.08 -8.27 16 28 C 0.38 5.33 7.32 -155.95 -1.14 4.19 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.09 1.08 7.49 -51.93 -0.39 0.69 16 32 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 34 H 0.18 1.60 7.34 -52.48 -0.39 1.21 16 35 H 0.15 2.38 7.97 -52.48 -0.42 1.96 16 36 H 0.05 0.87 5.67 -51.93 -0.29 0.58 16 37 H 0.09 1.65 7.85 -51.93 -0.41 1.24 16 38 H 0.03 0.69 7.88 -51.93 -0.41 0.28 16 39 H 0.01 0.28 4.84 -51.93 -0.25 0.03 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 41 H 0.05 0.85 7.24 -51.93 -0.38 0.47 16 42 H 0.08 1.73 6.57 -51.93 -0.34 1.39 16 43 H 0.08 1.37 6.07 -51.93 -0.32 1.06 16 44 H 0.09 1.86 7.62 -51.93 -0.40 1.46 16 45 H 0.07 1.46 7.08 -51.93 -0.37 1.09 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -31.67 388.59 -11.49 -43.15 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.24 Total: 3.43 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -4.54 Total: -7.73 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.63 Total: -50.85 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.67 -11.49 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072308439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.815 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds