Wall clock time and date at job start Tue Mar 31 2020 07:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30065 * 124.93351 * 2 1 4 4 C 1.35872 * 109.56381 * 179.97438 * 3 2 1 5 5 C 1.39403 * 133.52673 * 180.02562 * 4 3 2 6 6 C 1.39123 * 119.51129 * 179.97438 * 5 4 3 7 7 C 1.47677 * 119.90163 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00016 * 134.26338 * 7 6 5 9 9 N 1.34775 * 120.00194 * 314.25957 * 7 6 5 10 10 C 1.46500 * 120.00186 * 185.89194 * 9 7 6 11 11 C 1.50693 * 109.47456 * 89.99748 * 10 9 7 12 12 H 1.08004 * 120.00123 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00499 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99924 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00319 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47022 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47218 * 120.00289 * 15 13 11 18 18 H 1.48500 * 109.46822 * 240.00265 * 15 13 11 19 19 C 1.46497 * 119.99929 * 5.89228 * 9 7 6 20 20 C 1.53002 * 109.47599 * 98.17537 * 19 9 7 21 21 C 1.52994 * 109.47559 * 185.53178 * 20 19 9 22 22 C 1.53001 * 109.47176 * 175.00042 * 21 20 19 23 23 C 1.53005 * 109.46896 * 294.99544 * 21 20 19 24 24 C 1.40140 * 120.19339 * 0.02562 * 6 5 4 25 25 C 1.36428 * 120.45495 * 0.25468 * 24 6 5 26 26 C 1.39067 * 120.15024 * 359.48873 * 25 24 6 27 27 N 1.36084 * 124.93762 * 179.97438 * 2 1 3 28 28 C 1.46500 * 126.30554 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.47631 * 90.02366 * 1 2 3 30 30 H 1.09006 * 109.47267 * 210.02610 * 1 2 3 31 31 H 1.09006 * 109.47210 * 330.02365 * 1 2 3 32 32 H 1.08000 * 120.24217 * 0.02562 * 5 4 3 33 33 H 1.08998 * 109.47316 * 210.00390 * 10 9 7 34 34 H 1.09003 * 109.47122 * 329.99641 * 10 9 7 35 35 H 0.96991 * 120.00324 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.47118 * 218.17587 * 19 9 7 37 37 H 1.09007 * 109.47249 * 338.17423 * 19 9 7 38 38 H 1.09005 * 109.46743 * 305.53415 * 20 19 9 39 39 H 1.09002 * 109.46865 * 65.52799 * 20 19 9 40 40 H 1.09003 * 109.47273 * 54.99888 * 21 20 19 41 41 H 1.09003 * 109.47145 * 59.99768 * 22 21 20 42 42 H 1.08998 * 109.47287 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.47278 * 299.99675 * 22 21 20 44 44 H 1.08998 * 109.46940 * 60.00162 * 23 21 20 45 45 H 1.08998 * 109.46874 * 180.02562 * 23 21 20 46 46 H 1.08997 * 109.47067 * 300.00520 * 23 21 20 47 47 H 1.07996 * 119.76986 * 179.97438 * 24 6 5 48 48 H 1.08003 * 119.92251 * 179.72077 * 25 24 6 49 49 H 1.09000 * 109.47235 * 90.02409 * 28 27 2 50 50 H 1.09003 * 109.47158 * 210.02982 * 28 27 2 51 51 H 1.09001 * 109.46884 * 330.02690 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2517 1.0663 0.0000 4 6 3.5619 0.7062 0.0006 5 6 4.7555 1.4263 0.0013 6 6 5.9677 0.7437 0.0023 7 6 7.2373 1.4979 0.0025 8 8 8.1349 1.1770 0.7571 9 7 7.4011 2.5419 -0.8340 10 6 8.7021 3.2090 -0.9270 11 6 9.5312 2.5462 -1.9967 12 1 9.1291 1.7117 -2.5521 13 6 10.8027 3.0055 -2.2672 14 7 11.2922 4.0220 -1.5913 15 14 11.8300 2.1843 -3.5937 16 1 11.0562 1.0723 -4.2016 17 1 12.1735 3.1795 -4.6409 18 1 13.0774 1.6479 -2.9924 19 6 6.2781 3.0097 -1.6502 20 6 5.6218 4.2143 -0.9724 21 6 4.3679 4.6171 -1.7509 22 6 3.6437 5.7401 -1.0057 23 6 4.7680 5.1053 -3.1448 24 6 5.9875 -0.6576 0.0021 25 6 4.8213 -1.3656 -0.0044 26 6 3.6002 -0.7002 -0.0001 27 7 2.2863 -1.1156 0.0005 28 6 1.8152 -2.5028 0.0016 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 4.7392 2.5062 0.0019 33 1 8.5549 4.2589 -1.1799 34 1 9.2178 3.1348 0.0305 35 1 12.1868 4.3450 -1.7813 36 1 6.6416 3.3009 -2.6357 37 1 5.5464 2.2085 -1.7549 38 1 5.3465 3.9511 0.0489 39 1 6.3231 5.0486 -0.9561 40 1 3.7056 3.7564 -1.8436 41 1 4.3060 6.6008 -0.9130 42 1 2.7506 6.0274 -1.5606 43 1 3.3587 5.3923 -0.0127 44 1 5.2839 4.3054 -3.6757 45 1 3.8747 5.3927 -3.6993 46 1 5.4303 5.9660 -3.0520 47 1 6.9324 -1.1805 0.0024 48 1 4.8466 -2.4453 -0.0091 49 1 1.6984 -2.8477 -1.0257 50 1 2.5410 -3.1326 0.5161 51 1 0.8556 -2.5602 0.5155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078419795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:11 Heat of formation + Delta-G solvation = 32.571455 kcal Electronic energy + Delta-G solvation = -30785.465479 eV Core-core repulsion = 26878.487155 eV Total energy + Delta-G solvation = -3906.978324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.27912 -39.51450 -36.88288 -36.70276 -34.47395 -34.35089 -32.64303 -31.60138 -30.64788 -28.91032 -27.98025 -27.44410 -26.98084 -26.63929 -23.61638 -23.18542 -22.23994 -21.83007 -20.26476 -19.73432 -18.91478 -17.41411 -16.99826 -16.37286 -16.24925 -16.15981 -15.55438 -15.06104 -14.81926 -14.30485 -14.16342 -13.97760 -13.75935 -13.67233 -13.54208 -13.30935 -13.15045 -13.00530 -12.97964 -12.69532 -12.44133 -12.23028 -12.06720 -12.01264 -11.61585 -11.44258 -11.28856 -11.21349 -11.02394 -10.82439 -10.72010 -10.53629 -10.45968 -10.41105 -10.19823 -10.07562 -9.95292 -9.54395 -8.98260 -8.39938 -8.24952 -8.04713 -7.58275 -6.00306 -4.04774 0.95210 1.30040 2.39703 2.66813 3.32355 3.38897 3.41451 3.45762 3.86027 3.92251 4.16040 4.32066 4.36599 4.48111 4.71959 4.87117 4.90890 4.95175 5.06440 5.08574 5.11793 5.15714 5.21594 5.33008 5.35465 5.39728 5.47818 5.52124 5.59102 5.68956 5.76935 5.83477 5.90816 5.95254 6.03646 6.09539 6.15590 6.28166 6.30358 6.36927 6.40817 6.45913 6.55610 6.61858 6.71766 6.80793 6.98052 7.15496 7.51142 7.60051 7.79457 7.96785 8.28145 8.46109 8.93621 9.11805 9.60114 11.07759 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003485 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.094882 B = 8032.345390 C = 9695.107275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.270 3.730 3 N -0.484 5.484 4 C 0.040 3.960 5 C -0.046 4.046 6 C -0.122 4.122 7 C 0.552 3.448 8 O -0.537 6.537 9 N -0.587 5.587 10 C 0.246 3.754 11 C -0.525 4.525 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.100 3.900 20 C -0.137 4.137 21 C -0.094 4.094 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.051 4.051 25 C -0.121 4.121 26 C 0.057 3.943 27 N -0.495 5.495 28 C 0.079 3.921 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.262 0.738 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.056 0.944 47 H 0.138 0.862 48 H 0.123 0.877 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.789 -8.481 0.953 26.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 N -0.204 5.204 4 C -0.077 4.077 5 C -0.065 4.065 6 C -0.128 4.128 7 C 0.338 3.662 8 O -0.415 6.415 9 N -0.317 5.317 10 C 0.127 3.873 11 C -0.564 4.564 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.024 4.024 20 C -0.175 4.175 21 C -0.113 4.113 22 C -0.201 4.201 23 C -0.206 4.206 24 C -0.071 4.071 25 C -0.142 4.142 26 C -0.052 4.052 27 N -0.186 5.186 28 C -0.063 4.063 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.168 0.832 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.156 0.844 48 H 0.141 0.859 49 H 0.092 0.908 50 H 0.103 0.897 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.431 -7.799 1.353 25.681 hybrid contribution 0.912 -1.350 -0.810 1.820 sum -23.519 -9.150 0.543 25.241 Atomic orbital electron populations 1.20339 0.84484 1.04413 1.04030 1.23582 0.95645 0.80737 0.99518 1.70417 1.00793 1.27111 1.22034 1.18839 0.91760 0.90142 1.06987 1.21052 0.88124 1.01120 0.96220 1.19978 0.93602 0.94315 1.04890 1.18046 0.86121 0.80774 0.81242 1.90757 1.42904 1.67703 1.40169 1.48158 1.13181 1.31026 1.39332 1.19304 0.77430 0.92111 0.98477 1.21484 0.99555 1.16329 1.19047 0.92362 1.24924 0.97471 0.95072 0.96595 1.69945 1.17091 1.25437 1.40829 0.86463 0.80273 0.79358 0.81470 1.19800 1.20990 1.20908 1.21788 0.88997 0.96048 0.95517 1.22211 0.96915 0.99372 0.99044 1.21069 0.96443 0.98458 0.95325 1.21808 0.99804 0.98431 1.00086 1.21890 1.00888 1.01630 0.96209 1.20649 0.97899 0.92482 0.96107 1.19519 0.88703 0.99314 1.06639 1.18982 0.85125 0.95317 1.05764 1.45047 1.04726 1.07427 1.61406 1.21954 1.01485 0.79495 1.03409 0.89516 0.90490 0.88625 0.83238 0.94788 0.93638 0.92812 0.90051 0.90673 0.91752 0.90810 0.91032 0.92804 0.93040 0.92783 0.92220 0.93250 0.92523 0.84409 0.85873 0.90757 0.89735 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.17 36.00 0.37 -0.06 16 2 C 0.27 2.95 7.85 -154.82 -1.22 1.73 16 3 N -0.48 -6.98 11.28 -8.25 -0.09 -7.07 16 4 C 0.04 0.62 7.22 -84.72 -0.61 0.01 16 5 C -0.05 -0.75 7.44 -38.82 -0.29 -1.04 16 6 C -0.12 -2.22 5.09 -105.00 -0.53 -2.76 16 7 C 0.55 12.38 7.25 -12.41 -0.09 12.29 16 8 O -0.54 -14.16 16.54 5.30 0.09 -14.07 16 9 N -0.59 -13.03 2.46 -176.24 -0.43 -13.47 16 10 C 0.25 6.54 5.22 -5.20 -0.03 6.51 16 11 C -0.53 -15.05 9.39 -34.45 -0.32 -15.38 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 15 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 C 0.10 1.78 4.49 -4.04 -0.02 1.77 16 20 C -0.14 -2.11 4.07 -26.73 -0.11 -2.22 16 21 C -0.09 -1.21 2.90 -90.62 -0.26 -1.47 16 22 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 23 C -0.15 -1.85 8.95 37.16 0.33 -1.51 16 24 C -0.05 -0.82 9.61 -39.52 -0.38 -1.20 16 25 C -0.12 -1.59 9.97 -39.93 -0.40 -1.99 16 26 C 0.06 0.78 6.87 -83.95 -0.58 0.21 16 27 N -0.49 -5.18 3.20 -118.45 -0.38 -5.56 16 28 C 0.08 0.43 10.95 59.85 0.66 1.08 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.25 7.01 -51.93 -0.36 -0.11 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.15 2.41 3.67 -52.49 -0.19 2.22 16 33 H 0.03 0.91 7.99 -51.93 -0.41 0.50 16 34 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.08 1.49 6.83 -51.93 -0.35 1.13 16 37 H 0.08 1.25 5.04 -51.93 -0.26 0.99 16 38 H 0.06 1.00 6.18 -51.93 -0.32 0.68 16 39 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.77 6.69 -51.93 -0.35 0.42 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 48 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 0.25 6.99 -51.93 -0.36 -0.11 16 LS Contribution 409.16 15.07 6.17 6.17 Total: -1.00 -35.90 409.16 -10.21 -46.11 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.04 Total: 0.57 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -3.24 Total: -3.68 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.17 Total: -52.12 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.09 Total: -14.07 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.90 -10.21 -46.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078419795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.684 kcal (2) G-P(sol) polarization free energy of solvation -35.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds