Wall clock time and date at job start Tue Mar 31 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.80999 * 109.47001 * 2 1 4 4 C 1.76197 * 100.00187 * 180.02562 * 3 2 1 5 5 C 1.39477 * 119.54470 * 179.97438 * 4 3 2 6 6 C 1.36808 * 119.37787 * 180.02562 * 5 4 3 7 7 C 1.40408 * 118.49627 * 359.97438 * 6 5 4 8 8 C 1.47474 * 120.46871 * 180.02562 * 7 6 5 9 9 O 1.21608 * 119.99948 * 330.08648 * 8 7 6 10 10 N 1.34780 * 120.00111 * 150.08975 * 8 7 6 11 11 C 1.46500 * 119.99860 * 6.18701 * 10 8 7 12 12 C 1.50699 * 109.47064 * 98.02532 * 11 10 8 13 13 H 1.08003 * 120.00175 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00111 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00084 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47138 * 59.99552 * 16 14 12 18 18 H 1.48501 * 109.47304 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46993 * 299.99896 * 16 14 12 20 20 C 1.39852 * 119.99842 * 186.18533 * 10 8 7 21 21 C 1.38887 * 120.06668 * 173.06025 * 20 10 8 22 22 C 1.38109 * 119.92534 * 179.72460 * 21 20 10 23 23 C 1.38289 * 120.07066 * 0.52411 * 22 21 20 24 24 C 1.38284 * 120.14286 * 359.77073 * 23 22 21 25 25 C 1.38098 * 120.07469 * 359.95606 * 24 23 22 26 26 C 1.39598 * 119.06066 * 0.02562 * 7 6 5 27 27 N 1.31651 * 120.52025 * 0.02562 * 26 7 6 28 28 H 1.09001 * 109.47535 * 60.00427 * 1 2 3 29 29 H 1.09002 * 109.47119 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47431 * 299.99411 * 1 2 3 31 31 H 1.09002 * 109.46920 * 240.00192 * 2 1 3 32 32 H 1.08996 * 109.47622 * 120.00044 * 2 1 3 33 33 H 1.07999 * 120.30722 * 359.97438 * 5 4 3 34 34 H 1.08001 * 120.74620 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47067 * 218.02988 * 11 10 8 36 36 H 1.09000 * 109.46887 * 338.02749 * 11 10 8 37 37 H 0.96999 * 120.00264 * 180.02562 * 15 14 12 38 38 H 1.08004 * 120.04112 * 359.97157 * 21 20 10 39 39 H 1.08001 * 119.96989 * 180.29727 * 22 21 20 40 40 H 1.08000 * 119.92902 * 179.74339 * 23 22 21 41 41 H 1.08003 * 119.96220 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.03977 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.74069 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1332 1.7065 0.0000 4 6 3.8712 1.4166 -0.0008 5 6 4.7492 2.5004 -0.0015 6 6 6.0980 2.2714 -0.0027 7 6 6.5519 0.9427 -0.0025 8 6 7.9965 0.6460 -0.0031 9 8 8.7755 1.4177 -0.5289 10 7 8.4533 -0.4805 0.5790 11 6 7.5080 -1.4751 1.0921 12 6 7.3363 -2.5755 0.0768 13 1 7.8776 -2.5379 -0.8570 14 6 6.4890 -3.6307 0.3405 15 7 5.8302 -3.6768 1.4779 16 14 6.2766 -4.9951 -0.9176 17 1 7.5885 -5.6430 -1.1713 18 1 5.3192 -6.0039 -0.3971 19 1 5.7538 -4.4232 -2.1844 20 6 9.8298 -0.6998 0.6933 21 6 10.3036 -1.7858 1.4180 22 6 11.6634 -2.0028 1.5241 23 6 12.5531 -1.1342 0.9189 24 6 12.0847 -0.0485 0.2018 25 6 10.7261 0.1710 0.0871 26 6 5.6164 -0.0934 -0.0017 27 7 4.3266 0.1704 -0.0016 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.3678 3.5108 -0.0021 34 1 6.7977 3.0941 -0.0028 35 1 7.8915 -1.8952 2.0219 36 1 6.5453 -0.9991 1.2783 37 1 5.2344 -4.4193 1.6636 38 1 9.6094 -2.4620 1.8946 39 1 12.0325 -2.8498 2.0834 40 1 13.6161 -1.3037 1.0068 41 1 12.7821 0.6283 -0.2694 42 1 10.3609 1.0193 -0.4728 43 1 5.9534 -1.1195 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078999968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:37 Heat of formation + Delta-G solvation = 61.612536 kcal Electronic energy + Delta-G solvation = -27054.282605 eV Core-core repulsion = 23385.076189 eV Total energy + Delta-G solvation = -3669.206415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77119 -39.28396 -37.64318 -35.64794 -32.98832 -32.96642 -32.23253 -31.56557 -30.33303 -29.09272 -27.70835 -24.85759 -23.78485 -23.58255 -22.88623 -22.06709 -21.34638 -19.59196 -17.67909 -17.17912 -17.01270 -16.64843 -16.06068 -15.70838 -15.50376 -14.91309 -14.78225 -14.68236 -14.26782 -14.14384 -13.64521 -13.48574 -13.30825 -13.07594 -12.88909 -12.59931 -12.56578 -12.30893 -12.21335 -11.69121 -11.55937 -11.49781 -11.21035 -11.09154 -10.67167 -10.60921 -10.38049 -10.31723 -10.22976 -9.82717 -9.53895 -9.30420 -9.19507 -8.85507 -8.66363 -8.37202 -7.51532 -7.24927 -6.44397 -4.57326 0.83421 1.55352 1.61647 1.89054 1.98331 2.25613 3.14281 3.16260 3.19174 3.24486 3.47939 4.04254 4.15007 4.46911 4.76048 4.86905 4.96332 5.00030 5.01965 5.17497 5.30091 5.34293 5.39851 5.43413 5.49859 5.68131 5.76858 5.83493 5.95550 6.01642 6.06106 6.07060 6.13166 6.19113 6.40547 6.43401 6.66474 6.79923 6.93451 6.97949 7.01811 7.09326 7.19539 7.49498 7.65822 7.76118 7.95807 8.06231 8.49490 8.63144 9.12406 10.59163 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004113 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.166608 B = 6806.783528 C = 8991.574564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 S -0.086 6.086 4 C 0.134 3.866 5 C -0.177 4.177 6 C -0.007 4.007 7 C -0.202 4.202 8 C 0.567 3.433 9 O -0.537 6.537 10 N -0.527 5.527 11 C 0.201 3.799 12 C -0.555 4.555 13 H 0.069 0.931 14 C 0.076 3.924 15 N -0.872 5.872 16 Si 0.901 3.099 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.171 3.829 21 C -0.141 4.141 22 C -0.105 4.105 23 C -0.160 4.160 24 C -0.109 4.109 25 C -0.180 4.180 26 C 0.143 3.857 27 N -0.490 5.490 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.273 0.727 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.179 0.821 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 7.154 -0.189 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.248 4.248 3 S 0.154 5.846 4 C -0.115 4.115 5 C -0.203 4.203 6 C -0.035 4.035 7 C -0.210 4.210 8 C 0.358 3.642 9 O -0.419 6.419 10 N -0.244 5.244 11 C 0.082 3.918 12 C -0.592 4.592 13 H 0.087 0.913 14 C -0.131 4.131 15 N -0.507 5.507 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.196 1.196 20 C 0.075 3.925 21 C -0.161 4.161 22 C -0.124 4.124 23 C -0.179 4.179 24 C -0.128 4.128 25 C -0.199 4.199 26 C -0.015 4.015 27 N -0.202 5.202 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.154 0.846 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.196 0.804 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.163 7.745 -0.321 8.798 hybrid contribution 1.251 -1.447 -0.479 1.972 sum -2.912 6.298 -0.800 6.984 Atomic orbital electron populations 1.21586 0.92677 1.02945 1.02611 1.23390 0.98813 0.94974 1.07649 1.85440 0.94898 1.12976 1.91264 1.23371 0.98585 0.92607 0.96936 1.21204 0.93014 0.99183 1.06892 1.21193 0.95174 0.95894 0.91219 1.20840 0.94449 0.95369 1.10318 1.18078 0.87571 0.80547 0.77965 1.90338 1.55882 1.49891 1.45780 1.45786 1.05499 1.19449 1.53704 1.20513 0.88645 0.86324 0.96278 1.21305 1.27905 1.06086 1.03943 0.91268 1.24973 0.94642 0.97795 0.95702 1.69903 1.26408 1.31940 1.22494 0.86479 0.78448 0.81049 0.81328 1.19720 1.20780 1.19644 1.17998 0.82591 0.95415 0.96454 1.21066 0.95969 0.98000 1.01062 1.20852 0.92673 0.99020 0.99840 1.20995 0.98884 0.96774 1.01250 1.21023 0.95289 0.97449 0.99009 1.22779 0.92462 1.02570 1.02084 1.25712 0.86385 1.03819 0.85562 1.68412 1.17459 1.18737 1.15608 0.91982 0.90759 0.91903 0.88681 0.88422 0.84433 0.83948 0.93429 0.91585 0.91751 0.84616 0.86465 0.87119 0.86735 0.80439 0.74995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.92 37.15 0.37 -1.00 16 2 C -0.10 -1.30 5.54 37.15 0.21 -1.09 16 3 S -0.09 -1.17 22.05 -107.50 -2.37 -3.54 16 4 C 0.13 2.24 6.98 -16.72 -0.12 2.12 16 5 C -0.18 -2.66 9.77 -39.64 -0.39 -3.05 16 6 C -0.01 -0.12 9.67 -39.28 -0.38 -0.50 16 7 C -0.20 -3.90 5.59 -104.81 -0.59 -4.49 16 8 C 0.57 11.81 7.41 -12.50 -0.09 11.72 16 9 O -0.54 -11.40 13.16 5.27 0.07 -11.33 16 10 N -0.53 -11.25 2.70 -115.92 -0.31 -11.57 16 11 C 0.20 4.53 4.07 -5.19 -0.02 4.51 16 12 C -0.55 -13.41 7.41 -34.44 -0.26 -13.67 16 13 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 14 C 0.08 1.85 5.33 -17.82 -0.10 1.75 16 15 N -0.87 -21.94 13.29 55.43 0.74 -21.20 16 16 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 C 0.17 3.52 6.43 -83.72 -0.54 2.98 16 21 C -0.14 -2.71 9.23 -39.39 -0.36 -3.08 16 22 C -0.11 -1.74 10.04 -39.61 -0.40 -2.13 16 23 C -0.16 -2.48 10.04 -39.55 -0.40 -2.88 16 24 C -0.11 -1.80 10.04 -39.62 -0.40 -2.19 16 25 C -0.18 -3.47 9.06 -39.39 -0.36 -3.82 16 26 C 0.14 2.95 8.66 -17.12 -0.15 2.80 16 27 N -0.49 -9.46 9.10 -11.66 -0.11 -9.57 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.34 8.12 -51.92 -0.42 0.91 16 32 H 0.10 1.41 8.12 -51.92 -0.42 0.99 16 33 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.14 2.02 7.98 -52.49 -0.42 1.60 16 35 H 0.05 1.12 6.39 -51.93 -0.33 0.79 16 36 H 0.07 1.53 4.10 -51.93 -0.21 1.32 16 37 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 38 H 0.14 2.72 6.19 -52.48 -0.32 2.40 16 39 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.18 3.59 4.51 -56.28 -0.25 3.34 16 43 H 0.24 5.32 3.04 -52.49 -0.16 5.16 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -26.25 367.57 -10.47 -36.72 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.05 Total: 12.47 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -3.96 Total: -12.01 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.32 Total: -42.34 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -2.37 Total: -3.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.25 -10.47 -36.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078999968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.333 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds