Wall clock time and date at job start Tue Mar 31 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35549 * 125.68211 * 2 1 4 4 C 1.35450 * 108.87472 * 180.28334 * 3 2 1 5 5 C 1.39833 * 107.86748 * 359.74535 * 4 3 2 6 6 C 1.37652 * 125.67943 * 179.85729 * 2 1 3 7 7 C 1.46647 * 126.23400 * 359.97438 * 6 2 1 8 8 O 1.21717 * 120.00277 * 347.84863 * 7 6 2 9 9 N 1.34775 * 120.00376 * 168.12559 * 7 6 2 10 10 C 1.46504 * 119.99633 * 2.60410 * 9 7 6 11 11 C 1.50697 * 109.47393 * 82.27873 * 10 9 7 12 12 H 1.08006 * 119.99753 * 4.10392 * 11 10 9 13 13 C 1.37876 * 120.00318 * 184.09996 * 11 10 9 14 14 N 1.31516 * 120.00019 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99725 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46764 * 89.99973 * 15 13 11 17 17 H 1.48499 * 109.47000 * 209.99510 * 15 13 11 18 18 H 1.48496 * 109.47285 * 330.00046 * 15 13 11 19 19 C 1.40021 * 120.00417 * 182.60159 * 9 7 6 20 20 C 1.38859 * 120.02253 * 187.52778 * 19 9 7 21 21 C 1.38130 * 120.03565 * 179.77648 * 20 19 9 22 22 C 1.38713 * 120.16238 * 0.56487 * 21 20 19 23 23 C 1.38999 * 119.93582 * 359.62397 * 22 21 20 24 24 C 1.38642 * 119.88616 * 0.12359 * 23 22 21 25 25 O 1.36113 * 120.78234 * 180.26504 * 23 22 21 26 26 C 1.43167 * 116.73191 * 342.80296 * 25 23 22 27 27 C 1.53475 * 108.24705 * 46.18920 * 26 25 23 28 28 O 1.36206 * 119.31663 * 179.53842 * 22 21 20 29 29 H 1.09008 * 109.47150 * 274.64008 * 1 2 3 30 30 H 1.08995 * 109.47202 * 34.64115 * 1 2 3 31 31 H 1.09004 * 109.47489 * 154.64539 * 1 2 3 32 32 H 1.08001 * 125.55963 * 0.02870 * 3 2 1 33 33 H 1.08000 * 126.06590 * 179.75419 * 4 3 2 34 34 H 1.08003 * 126.45460 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.46995 * 202.27696 * 10 9 7 36 36 H 1.08999 * 109.47046 * 322.27598 * 10 9 7 37 37 H 0.96998 * 119.99696 * 179.97438 * 14 13 11 38 38 H 1.08000 * 119.98332 * 0.04783 * 20 19 9 39 39 H 1.08000 * 119.91772 * 180.24962 * 21 20 19 40 40 H 1.08002 * 119.99318 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.70990 * 165.87708 * 26 25 23 42 42 H 1.09004 * 109.71057 * 286.50602 * 26 25 23 43 43 H 1.09002 * 109.70586 * 59.91856 * 27 26 25 44 44 H 1.08999 * 109.71312 * 180.54779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2556 1.1010 0.0000 4 6 3.5522 0.7094 -0.0063 5 6 3.5781 -0.6887 -0.0046 6 6 2.2678 -1.1181 0.0028 7 6 1.8125 -2.5121 0.0068 8 8 0.6441 -2.7702 0.2298 9 7 2.6889 -3.5080 -0.2310 10 6 4.1068 -3.2023 -0.4368 11 6 4.7850 -3.0406 0.8992 12 1 4.2330 -3.2192 1.8101 13 6 6.1103 -2.6648 0.9586 14 7 6.7019 -2.5231 2.1246 15 14 7.0649 -2.3553 -0.6170 16 1 6.9345 -0.9271 -1.0022 17 1 8.4974 -2.6807 -0.3997 18 1 6.5215 -3.2121 -1.7013 19 6 2.2444 -4.8349 -0.2811 20 6 3.1629 -5.8725 -0.3694 21 6 2.7248 -7.1817 -0.4143 22 6 1.3671 -7.4638 -0.3832 23 6 0.4450 -6.4271 -0.2988 24 6 0.8852 -5.1134 -0.2485 25 8 -0.8911 -6.6845 -0.2617 26 6 -1.3083 -7.9860 -0.6880 27 6 -0.3919 -9.0248 -0.0272 28 8 0.9539 -8.7605 -0.4378 29 1 -0.3634 0.0831 1.0244 30 1 -0.3633 0.8454 -0.5841 31 1 -0.3634 -0.9287 -0.4401 32 1 1.9083 2.1237 0.0004 33 1 4.4133 1.3612 -0.0117 34 1 4.4585 -1.3143 -0.0080 35 1 4.5780 -4.0168 -0.9872 36 1 4.2002 -2.2774 -1.0060 37 1 7.6343 -2.2591 2.1664 38 1 4.2206 -5.6560 -0.3986 39 1 3.4411 -7.9875 -0.4789 40 1 0.1702 -4.3065 -0.1833 41 1 -2.3403 -8.1594 -0.3832 42 1 -1.2271 -8.0612 -1.7724 43 1 -0.4678 -8.9449 1.0572 44 1 -0.6831 -10.0263 -0.3439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079000417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:16 Heat of formation + Delta-G solvation = 26.986404 kcal Electronic energy + Delta-G solvation = -30420.111908 eV Core-core repulsion = 26306.651119 eV Total energy + Delta-G solvation = -4113.460788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.21124 -40.82443 -39.38046 -37.06521 -36.90512 -35.47630 -32.79642 -32.29354 -30.81256 -30.48031 -28.91544 -28.30245 -27.35500 -25.96147 -24.51221 -23.44561 -22.26830 -22.02701 -20.21798 -19.97013 -18.82992 -18.18988 -17.38262 -17.21732 -17.01378 -16.48427 -15.95509 -15.23840 -15.18888 -15.10680 -14.75866 -14.45358 -14.20961 -13.99122 -13.94136 -13.65614 -13.19726 -13.13419 -12.98870 -12.75230 -12.54441 -12.40816 -12.28423 -11.98384 -11.73507 -11.58030 -11.47615 -11.00248 -10.89365 -10.83205 -10.44347 -10.38878 -10.06861 -9.76839 -9.01243 -8.89794 -8.81547 -8.13291 -8.07189 -7.70472 -7.03591 -6.30564 -4.31857 1.52518 1.74647 2.17326 2.98257 3.13691 3.20175 3.20760 3.24331 3.31570 3.39059 3.81009 3.88089 4.16550 4.29084 4.32078 4.80594 4.89065 4.95229 4.98590 5.08268 5.10829 5.23984 5.37225 5.43311 5.45751 5.57026 5.70497 5.75106 5.83800 5.98390 6.10358 6.16173 6.20028 6.44222 6.52483 6.58579 6.69481 6.79909 6.85187 6.99374 7.15910 7.23521 7.36461 7.44761 7.62057 7.71278 7.78890 7.87922 8.25436 8.66153 8.78511 9.22060 10.81199 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.004378 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.719455 B = 6393.353521 C = 8513.922632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.422 5.422 3 C 0.007 3.993 4 C -0.221 4.221 5 C -0.123 4.123 6 C -0.062 4.062 7 C 0.597 3.403 8 O -0.552 6.552 9 N -0.515 5.515 10 C 0.177 3.823 11 C -0.540 4.540 12 H 0.084 0.916 13 C 0.083 3.917 14 N -0.876 5.876 15 Si 0.853 3.147 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.260 1.260 19 C 0.181 3.819 20 C -0.141 4.141 21 C -0.091 4.091 22 C 0.008 3.992 23 C 0.066 3.934 24 C -0.169 4.169 25 O -0.307 6.307 26 C 0.022 3.978 27 C 0.022 3.978 28 O -0.312 6.312 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.201 0.799 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.270 0.730 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.189 0.811 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 -3.219 -7.334 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.097 5.097 3 C -0.127 4.127 4 C -0.246 4.246 5 C -0.148 4.148 6 C -0.173 4.173 7 C 0.391 3.609 8 O -0.436 6.436 9 N -0.233 5.233 10 C 0.058 3.942 11 C -0.578 4.578 12 H 0.102 0.898 13 C -0.123 4.123 14 N -0.512 5.512 15 Si 0.678 3.322 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.184 1.184 19 C 0.084 3.916 20 C -0.161 4.161 21 C -0.110 4.110 22 C -0.037 4.037 23 C 0.021 3.979 24 C -0.189 4.189 25 O -0.221 6.221 26 C -0.054 4.054 27 C -0.054 4.054 28 O -0.227 6.227 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.178 0.822 33 H 0.154 0.846 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.205 0.795 41 H 0.133 0.867 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.281 -3.283 -7.123 14.572 hybrid contribution 0.569 0.095 -0.420 0.713 sum -11.712 -3.188 -7.543 14.291 Atomic orbital electron populations 1.22107 0.77154 1.04545 1.03129 1.43716 1.06100 1.05040 1.54826 1.21874 0.90996 0.90952 1.08922 1.20985 0.95533 0.95964 1.12157 1.23502 0.97421 0.95484 0.98368 1.19696 0.90629 0.86582 1.20390 1.17011 0.84170 0.84002 0.75740 1.90383 1.18176 1.83446 1.51547 1.45201 1.10639 1.03041 1.64390 1.20847 0.75594 0.98647 0.99158 1.21184 0.96343 1.48302 0.91937 0.89793 1.24815 0.96923 0.94488 0.96053 1.69861 1.12421 1.45082 1.23814 0.87211 0.80572 0.80229 0.84182 1.18782 1.20366 1.18387 1.17539 0.91844 0.83901 0.98279 1.20867 1.00463 0.90244 1.04555 1.20122 0.91827 0.96574 1.02491 1.18838 0.93502 0.82343 1.08991 1.18705 0.82014 0.93296 1.03902 1.21769 0.96188 0.95573 1.05337 1.86299 1.20307 1.32817 1.82690 1.23546 0.99697 0.82427 0.99777 1.23511 0.81744 1.00113 1.00035 1.86269 1.29487 1.23512 1.83461 0.91136 0.90757 0.88408 0.82152 0.84579 0.78302 0.93618 0.92299 0.91985 0.83504 0.84853 0.79527 0.86659 0.90919 0.90916 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.60 59.84 0.63 1.61 16 2 N -0.42 -7.31 3.16 -120.24 -0.38 -7.69 16 3 C 0.01 0.12 11.38 -16.90 -0.19 -0.08 16 4 C -0.22 -4.01 10.81 -39.98 -0.43 -4.44 16 5 C -0.12 -2.61 8.14 -39.11 -0.32 -2.93 16 6 C -0.06 -1.29 6.73 -81.99 -0.55 -1.84 16 7 C 0.60 12.99 7.45 -12.87 -0.10 12.90 16 8 O -0.55 -12.02 11.25 5.17 0.06 -11.96 16 9 N -0.52 -11.17 2.71 -116.19 -0.31 -11.49 16 10 C 0.18 3.90 3.32 -5.19 -0.02 3.88 16 11 C -0.54 -13.73 7.78 -34.44 -0.27 -13.99 16 12 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 13 C 0.08 2.12 5.03 -17.82 -0.09 2.03 16 14 N -0.88 -24.40 13.96 55.43 0.77 -23.63 16 15 Si 0.85 18.51 26.56 -169.99 -4.51 14.00 16 16 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.26 -5.30 6.66 56.52 0.38 -4.92 16 19 C 0.18 3.72 6.49 -83.69 -0.54 3.18 16 20 C -0.14 -2.66 9.16 -39.39 -0.36 -3.02 16 21 C -0.09 -1.55 9.95 -39.45 -0.39 -1.94 16 22 C 0.01 0.14 6.49 -39.12 -0.25 -0.11 16 23 C 0.07 1.20 6.49 -39.15 -0.25 0.95 16 24 C -0.17 -3.38 8.91 -39.23 -0.35 -3.73 16 25 O -0.31 -4.97 10.42 -32.88 -0.34 -5.32 16 26 C 0.02 0.24 7.26 37.40 0.27 0.51 16 27 C 0.02 0.24 7.26 37.40 0.27 0.51 16 28 O -0.31 -4.69 10.42 -33.18 -0.35 -5.04 16 29 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.46 6.37 -51.93 -0.33 1.12 16 32 H 0.16 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 34 H 0.20 4.54 1.80 -52.48 -0.09 4.45 16 35 H 0.05 0.96 5.46 -51.93 -0.28 0.68 16 36 H 0.06 1.27 4.19 -51.93 -0.22 1.06 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.15 2.75 6.20 -52.49 -0.33 2.42 16 39 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.19 3.96 4.64 -55.66 -0.26 3.71 16 41 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -31.26 350.67 -7.62 -38.88 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.90 Total: 13.47 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.94 Total: -6.52 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.08 Total: -42.81 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.63 Total: -22.31 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -4.51 Total: 14.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.26 -7.62 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079000417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.869 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds