Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47149 * 2 1 4 4 C 1.52996 * 109.47028 * 240.00094 * 2 1 3 5 5 C 1.53003 * 109.47011 * 120.00176 * 2 1 3 6 6 H 1.08992 * 109.47398 * 295.47943 * 5 2 1 7 7 N 1.46507 * 109.46502 * 175.48174 * 5 2 1 8 8 S 1.65599 * 119.99338 * 124.79604 * 7 5 2 9 9 O 1.42111 * 104.27534 * 179.76942 * 8 7 5 10 10 O 1.42098 * 104.28054 * 307.62398 * 8 7 5 11 11 C 1.81396 * 104.45344 * 63.70018 * 8 7 5 12 12 C 1.53001 * 109.47452 * 179.97438 * 11 8 7 13 13 C 1.50695 * 109.47226 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00420 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00117 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00328 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99747 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47139 * 90.00364 * 17 15 13 19 19 H 1.48507 * 109.46965 * 209.99916 * 17 15 13 20 20 H 1.48495 * 109.47345 * 330.00030 * 17 15 13 21 21 C 1.50698 * 109.46963 * 55.48388 * 5 2 1 22 22 C 1.38274 * 119.98816 * 80.27584 * 21 5 2 23 23 C 1.38226 * 120.04793 * 180.31833 * 22 21 5 24 24 C 1.38215 * 120.02710 * 359.68109 * 23 22 21 25 25 C 1.38444 * 119.97414 * 0.02562 * 24 23 22 26 26 F 1.35100 * 120.02531 * 180.02562 * 25 24 23 27 27 C 1.38169 * 119.98624 * 259.99735 * 21 5 2 28 28 H 1.09002 * 109.47099 * 299.99674 * 1 2 3 29 29 H 1.09000 * 109.46988 * 59.99735 * 1 2 3 30 30 H 1.08994 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47448 * 178.18378 * 3 2 1 32 32 H 1.09003 * 109.47558 * 298.18713 * 3 2 1 33 33 H 1.09000 * 109.47214 * 58.18918 * 3 2 1 34 34 H 1.08994 * 109.47319 * 300.00112 * 4 2 1 35 35 H 1.09000 * 109.47097 * 60.00237 * 4 2 1 36 36 H 1.09003 * 109.47148 * 179.97438 * 4 2 1 37 37 H 0.96998 * 120.00288 * 304.78606 * 7 5 2 38 38 H 1.09003 * 109.47053 * 300.00241 * 11 8 7 39 39 H 1.09003 * 109.47693 * 59.99622 * 11 8 7 40 40 H 1.09003 * 109.46966 * 299.99710 * 12 11 8 41 41 H 1.08995 * 109.47111 * 59.99836 * 12 11 8 42 42 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 43 43 H 1.07999 * 119.97009 * 0.02562 * 22 21 5 44 44 H 1.08001 * 119.98516 * 179.69988 * 23 22 21 45 45 H 1.07999 * 120.01136 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.01492 * 359.97374 * 27 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.7443 -0.1629 2.1374 7 7 3.5010 -0.8162 1.1960 8 16 4.4149 -0.2281 2.4454 9 8 5.7551 -0.4939 2.0547 10 8 3.9534 1.1045 2.6203 11 6 3.9512 -1.2541 3.8676 12 6 4.7384 -0.8037 5.0999 13 6 4.3526 -1.6557 6.2815 14 1 3.6197 -2.4403 6.1652 15 6 4.9354 -1.4336 7.5111 16 7 4.5992 -2.1775 8.5422 17 14 6.2027 -0.0761 7.7125 18 1 5.5188 1.1881 8.0859 19 1 7.1653 -0.4518 8.7791 20 1 6.9314 0.1147 6.4327 21 6 1.4484 -2.1061 1.3064 22 6 1.9945 -3.1229 0.5449 23 6 1.4487 -4.3920 0.5913 24 6 0.3604 -4.6476 1.4042 25 6 -0.1834 -3.6317 2.1716 26 9 -1.2468 -3.8805 2.9669 27 6 0.3640 -2.3606 2.1240 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1295 1.4427 0.0326 32 1 1.7035 1.9469 -0.9058 33 1 1.6504 1.9656 0.8733 34 1 1.6766 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.9330 -1.2236 0.4290 38 1 2.8834 -1.1481 4.0594 39 1 4.1797 -2.2980 3.6526 40 1 5.8061 -0.9102 4.9078 41 1 4.5102 0.2401 5.3152 42 1 5.0090 -2.0210 9.4073 43 1 2.8451 -2.9242 -0.0902 44 1 1.8730 -5.1843 -0.0075 45 1 -0.0655 -5.6394 1.4406 46 1 -0.0593 -1.5674 2.7224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079020348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = -109.237261 kcal Electronic energy + Delta-G solvation = -29317.868864 eV Core-core repulsion = 25248.599053 eV Total energy + Delta-G solvation = -4069.269811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.96119 -40.33514 -37.61598 -36.69974 -35.60144 -33.96424 -33.62294 -31.56627 -31.41846 -30.50041 -27.57531 -27.18544 -25.97614 -25.96214 -22.89860 -21.97109 -21.29874 -19.30589 -19.09845 -17.89609 -17.58288 -16.87783 -16.52900 -16.27902 -16.00996 -15.67920 -15.59637 -15.01003 -14.79744 -14.63381 -14.30756 -14.01417 -13.85388 -13.60951 -13.44740 -12.81100 -12.72236 -12.48866 -12.38799 -12.19034 -12.12950 -11.92118 -11.78540 -11.76119 -11.72891 -11.64513 -11.38567 -11.27985 -11.20814 -11.16126 -10.92324 -10.78442 -10.45728 -10.18260 -9.86533 -9.51813 -9.23202 -9.12072 -8.79918 -8.66418 -6.16371 -4.17701 0.60999 0.96829 1.02921 2.92535 3.25960 3.33439 3.37313 3.39675 3.98031 4.12998 4.35504 4.36068 4.42801 4.54472 4.61157 4.69872 4.78964 4.88996 4.96854 5.02644 5.15203 5.17831 5.29507 5.38016 5.48334 5.52188 5.53673 5.60337 5.62323 5.69270 5.77252 5.81574 5.85570 5.92376 5.94935 6.03177 6.09717 6.14953 6.26486 6.31469 6.35432 6.70810 6.80405 6.89168 6.96323 7.54454 8.36782 8.85212 9.43159 10.96043 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.004340 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.651855 B = 6449.779562 C = 8121.333914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.150 4.150 5 C 0.201 3.799 6 H 0.104 0.896 7 N -1.115 6.115 8 S 2.585 3.415 9 O -0.966 6.966 10 O -0.960 6.960 11 C -0.581 4.581 12 C -0.006 4.006 13 C -0.519 4.519 14 H 0.078 0.922 15 C 0.072 3.928 16 N -0.895 5.895 17 Si 0.868 3.132 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.091 4.091 24 C -0.154 4.154 25 C 0.103 3.897 26 F -0.139 7.139 27 C -0.143 4.143 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.413 0.587 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.266 0.734 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 -0.568 -21.377 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.207 4.207 5 C 0.093 3.907 6 H 0.121 0.879 7 N -0.871 5.871 8 S 2.682 3.318 9 O -0.956 6.956 10 O -0.950 6.950 11 C -0.715 4.715 12 C -0.045 4.045 13 C -0.558 4.558 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.694 3.306 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.066 4.066 22 C -0.134 4.134 23 C -0.109 4.109 24 C -0.173 4.173 25 C 0.084 3.916 26 F -0.118 7.118 27 C -0.162 4.162 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.248 0.752 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.027 0.231 -21.093 22.945 hybrid contribution 0.211 -0.270 0.445 0.562 sum -8.816 -0.039 -20.648 22.451 Atomic orbital electron populations 1.21930 0.93786 1.02284 1.02235 1.20754 0.95898 0.96045 0.94145 1.21862 1.01955 0.94078 1.01928 1.22041 1.01150 1.00837 0.96702 1.19711 0.79290 0.91560 1.00141 0.87854 1.55901 1.14834 1.79320 1.37055 1.05781 0.73795 0.76189 0.75988 1.93566 1.34473 1.86276 1.81314 1.93565 1.81572 1.33919 1.85947 1.30302 1.11131 1.14597 1.15428 1.19399 0.95148 0.97804 0.92159 1.20837 1.25514 1.17898 0.91519 0.90416 1.24976 0.96337 0.95994 0.95723 1.69879 1.43188 1.39362 1.00871 0.86945 0.82118 0.82764 0.78734 1.19653 1.20742 1.18648 1.19986 0.94894 0.96032 0.95684 1.21030 1.00359 0.92424 0.99590 1.20988 0.95006 0.96972 0.97900 1.21164 0.98571 0.99077 0.98526 1.17647 0.86819 0.94343 0.92835 1.91517 1.53584 1.94869 1.71787 1.21036 0.97908 0.96110 1.01159 0.92195 0.92255 0.92126 0.92044 0.92691 0.91829 0.91711 0.92372 0.92364 0.75185 0.85869 0.85479 0.95015 0.95406 0.92383 0.85223 0.85007 0.84884 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.94 37.16 0.30 -0.85 16 2 C -0.07 -0.59 0.62 -154.51 -0.10 -0.69 16 3 C -0.14 -1.42 8.38 37.16 0.31 -1.11 16 4 C -0.15 -1.12 7.30 37.16 0.27 -0.85 16 5 C 0.20 2.09 1.74 -69.08 -0.12 1.97 16 6 H 0.10 1.12 7.50 -51.93 -0.39 0.73 16 7 N -1.12 -12.70 4.10 -5.88 -0.02 -12.72 16 8 S 2.59 41.82 5.33 -107.50 -0.57 41.24 16 9 O -0.97 -18.35 18.08 -57.54 -1.04 -19.39 16 10 O -0.96 -17.51 17.64 -57.54 -1.01 -18.52 16 11 C -0.58 -10.52 5.98 37.16 0.22 -10.29 16 12 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 13 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 14 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 17 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 21 C -0.06 -0.64 3.71 -104.64 -0.39 -1.03 16 22 C -0.12 -1.03 7.28 -39.57 -0.29 -1.31 16 23 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 24 C -0.15 -1.50 10.03 -39.51 -0.40 -1.90 16 25 C 0.10 1.18 7.30 -39.42 -0.29 0.89 16 26 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 27 C -0.14 -1.55 8.67 -39.52 -0.34 -1.89 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 6.58 -51.93 -0.34 0.14 16 31 H 0.06 0.70 7.69 -51.93 -0.40 0.30 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.45 5.59 -51.93 -0.29 0.16 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.42 6.67 -51.93 -0.35 0.07 16 37 H 0.41 3.80 6.27 -34.47 -0.22 3.58 16 38 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 39 H 0.13 2.14 8.14 -51.92 -0.42 1.72 16 40 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 41 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.13 0.92 6.15 -52.49 -0.32 0.60 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.14 1.37 8.04 -52.49 -0.42 0.95 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -34.32 381.42 -9.41 -43.72 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.89 Total: 2.48 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: -1.76 Total: -31.30 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.75 Total: -39.04 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -2.05 Total: -37.91 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 16 Polarization: 41.82 SS G_CDS: -0.57 Total: 41.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.32 -9.41 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079020348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.513 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds