Wall clock time and date at job start Tue Mar 31 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46887 * 2 1 4 4 C 1.53001 * 109.47168 * 240.00053 * 2 1 3 5 5 C 1.53001 * 109.46863 * 119.99714 * 2 1 3 6 6 H 1.09003 * 109.46953 * 178.01489 * 5 2 1 7 7 N 1.46501 * 109.47278 * 298.01412 * 5 2 1 8 8 S 1.65600 * 119.99683 * 214.65303 * 7 5 2 9 9 O 1.42100 * 104.27567 * 180.64396 * 8 7 5 10 10 O 1.42102 * 104.27974 * 308.49579 * 8 7 5 11 11 C 1.81399 * 104.45138 * 64.57151 * 8 7 5 12 12 C 1.53002 * 109.47390 * 184.66558 * 11 8 7 13 13 C 1.50695 * 109.47538 * 180.02562 * 12 11 8 14 14 H 1.08006 * 119.99496 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00039 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00132 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47393 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47287 * 119.99844 * 17 15 13 20 20 H 1.48500 * 109.47266 * 239.99959 * 17 15 13 21 21 C 1.50693 * 109.47219 * 58.01580 * 5 2 1 22 22 C 1.38268 * 119.98822 * 279.97657 * 21 5 2 23 23 C 1.38221 * 120.05270 * 180.02562 * 22 21 5 24 24 C 1.38222 * 120.02517 * 359.97438 * 23 22 21 25 25 C 1.38434 * 119.97335 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.02366 * 179.97438 * 25 24 23 27 27 C 1.38182 * 119.99135 * 99.99147 * 21 5 2 28 28 H 1.09001 * 109.47648 * 299.99766 * 1 2 3 29 29 H 1.09007 * 109.47707 * 60.00056 * 1 2 3 30 30 H 1.09007 * 109.47351 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47227 * 184.35813 * 3 2 1 32 32 H 1.09002 * 109.47414 * 304.36089 * 3 2 1 33 33 H 1.09003 * 109.47317 * 64.35778 * 3 2 1 34 34 H 1.08995 * 109.46780 * 299.99948 * 4 2 1 35 35 H 1.08999 * 109.46829 * 59.99999 * 4 2 1 36 36 H 1.09005 * 109.46608 * 179.97438 * 4 2 1 37 37 H 0.96996 * 120.00415 * 34.65415 * 7 5 2 38 38 H 1.08996 * 109.47156 * 304.66112 * 11 8 7 39 39 H 1.09004 * 109.47379 * 64.66479 * 11 8 7 40 40 H 1.09000 * 109.47014 * 300.00149 * 12 11 8 41 41 H 1.09004 * 109.46924 * 59.99643 * 12 11 8 42 42 H 0.96996 * 120.00297 * 180.02562 * 16 15 13 43 43 H 1.07997 * 119.97230 * 359.97438 * 22 21 5 44 44 H 1.08007 * 119.98663 * 179.97438 * 23 22 21 45 45 H 1.08002 * 120.00856 * 180.02562 * 24 23 22 46 46 H 1.08004 * 120.00764 * 359.73449 * 27 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2493 6 1 3.1293 -0.7521 1.2317 7 7 1.5910 -0.0035 2.4450 8 16 2.5610 0.0596 3.7857 9 8 1.8069 0.8087 4.7288 10 8 2.9045 -1.2967 4.0339 11 6 4.0176 0.9968 3.2469 12 6 5.0514 1.0256 4.3745 13 6 6.2613 1.8048 3.9271 14 1 6.2901 2.2359 2.9373 15 6 7.3317 1.9663 4.7810 16 7 7.2967 1.4408 5.9861 17 14 8.8316 2.9314 4.2262 18 1 8.6234 3.4150 2.8376 19 1 9.0354 4.0922 5.1296 20 1 10.0289 2.0540 4.2699 21 6 1.4978 -2.1270 1.2742 22 6 0.2062 -2.3621 1.7083 23 6 -0.2922 -3.6511 1.7322 24 6 0.5001 -4.7067 1.3216 25 6 1.7933 -4.4726 0.8868 26 9 2.5688 -5.5036 0.4857 27 6 2.2917 -3.1808 0.8636 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1271 1.4436 -0.0781 32 1 1.6141 1.9784 -0.8483 33 1 1.7417 1.9333 0.9265 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 0.7257 0.4348 2.4514 38 1 4.4518 0.5200 2.3681 39 1 3.7224 2.0163 2.9985 40 1 4.6172 1.5024 5.2533 41 1 5.3467 0.0061 4.6228 42 1 8.0496 1.5548 6.5869 43 1 -0.4134 -1.5380 2.0297 44 1 -1.3011 -3.8336 2.0718 45 1 0.1102 -5.7137 1.3400 46 1 3.2991 -2.9965 0.5207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079020351.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:28 Heat of formation + Delta-G solvation = -112.849227 kcal Electronic energy + Delta-G solvation = -29149.697991 eV Core-core repulsion = 25080.271554 eV Total energy + Delta-G solvation = -4069.426437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.92375 -40.28110 -37.57451 -36.57624 -35.44479 -33.92045 -33.53163 -31.41186 -31.19896 -30.45867 -27.58437 -27.24119 -25.91373 -25.62050 -22.80043 -21.93780 -21.68022 -19.32657 -18.98445 -17.71071 -17.45902 -16.54861 -16.53850 -16.24077 -15.89424 -15.60473 -15.42809 -14.96904 -14.75138 -14.56154 -14.44770 -14.00245 -13.87941 -13.51824 -13.39992 -12.76315 -12.54824 -12.43776 -12.38198 -12.17699 -12.09811 -11.82137 -11.78153 -11.67643 -11.58623 -11.49231 -11.33565 -11.11932 -11.04677 -10.98760 -10.95053 -10.82124 -10.41234 -10.39860 -9.85861 -9.57306 -9.10053 -9.02097 -8.69053 -8.52223 -6.14008 -4.19685 0.73453 1.07130 1.12540 3.06273 3.24112 3.31556 3.34505 3.48267 4.09110 4.18299 4.35669 4.40762 4.51418 4.53345 4.70606 4.72030 4.80260 4.94175 5.03863 5.09647 5.21374 5.22713 5.27665 5.40194 5.48601 5.53352 5.58960 5.62680 5.65728 5.74224 5.74670 5.80002 5.87534 5.95440 5.99423 6.02677 6.11407 6.17569 6.20799 6.42981 6.46817 6.79613 7.00820 7.27947 7.34173 7.78942 8.15463 8.83947 9.45326 10.97072 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012494 B = 0.003418 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.620211 B = 8189.210950 C = 8526.380776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.145 4.145 5 C 0.202 3.798 6 H 0.097 0.903 7 N -1.118 6.118 8 S 2.585 3.415 9 O -0.968 6.968 10 O -0.957 6.957 11 C -0.590 4.590 12 C 0.028 3.972 13 C -0.519 4.519 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.055 4.055 22 C -0.111 4.111 23 C -0.095 4.095 24 C -0.156 4.156 25 C 0.098 3.902 26 F -0.142 7.142 27 C -0.138 4.138 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.412 0.588 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.031 0.969 41 H 0.035 0.965 42 H 0.265 0.735 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.247 -6.244 -15.418 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.068 4.068 3 C -0.205 4.205 4 C -0.203 4.203 5 C 0.094 3.906 6 H 0.115 0.885 7 N -0.874 5.874 8 S 2.683 3.317 9 O -0.958 6.958 10 O -0.946 6.946 11 C -0.723 4.723 12 C -0.011 4.011 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.057 4.057 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.175 4.175 25 C 0.079 3.921 26 F -0.120 7.120 27 C -0.157 4.157 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.247 0.753 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.184 -6.785 -14.407 22.705 hybrid contribution 0.998 0.781 -0.687 1.441 sum -15.186 -6.003 -15.094 22.237 Atomic orbital electron populations 1.22077 0.94203 1.02595 1.01857 1.20736 0.96447 0.95942 0.93692 1.21938 1.01714 0.94387 1.02433 1.21923 1.01464 1.00555 0.96357 1.19675 0.98761 0.86898 0.85281 0.88480 1.56001 1.32937 1.68021 1.30427 1.05814 0.76619 0.75910 0.73345 1.93555 1.69494 1.73982 1.58785 1.93577 1.84584 1.33403 1.83081 1.30465 1.16974 1.13165 1.11685 1.18961 0.92364 0.99326 0.90419 1.21024 1.00155 1.34119 1.00581 0.91978 1.25065 0.98791 0.95731 0.94879 1.69962 1.31658 1.44329 1.06839 0.86428 0.82459 0.79716 0.78770 1.19634 1.20796 1.20795 1.19965 0.94008 0.94949 0.96789 1.21022 0.95315 0.97064 0.99554 1.20964 0.99816 0.91998 0.98504 1.21104 0.93093 1.00645 1.02696 1.17618 0.89683 0.84236 1.00589 1.91497 1.74649 1.57509 1.88368 1.20979 1.01096 0.90781 1.02868 0.92429 0.92304 0.91522 0.91910 0.92232 0.91813 0.92079 0.92115 0.92090 0.75304 0.86413 0.85985 0.95040 0.94688 0.92569 0.85363 0.85156 0.85039 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 7.15 37.15 0.27 -0.83 16 2 C -0.07 -0.56 0.61 -154.51 -0.09 -0.65 16 3 C -0.15 -1.25 8.36 37.16 0.31 -0.94 16 4 C -0.15 -1.13 8.12 37.16 0.30 -0.82 16 5 C 0.20 2.19 1.63 -69.09 -0.11 2.08 16 6 H 0.10 1.06 6.89 -51.93 -0.36 0.70 16 7 N -1.12 -13.38 3.69 -5.88 -0.02 -13.41 16 8 S 2.59 44.76 5.38 -107.50 -0.58 44.18 16 9 O -0.97 -19.51 18.08 -57.54 -1.04 -20.55 16 10 O -0.96 -19.60 17.76 -57.54 -1.02 -20.63 16 11 C -0.59 -10.82 5.92 37.16 0.22 -10.60 16 12 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 13 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.06 -0.63 3.77 -104.63 -0.39 -1.03 16 22 C -0.11 -1.17 7.04 -39.58 -0.28 -1.45 16 23 C -0.09 -0.92 10.04 -39.59 -0.40 -1.32 16 24 C -0.16 -1.65 10.03 -39.51 -0.40 -2.04 16 25 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 26 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 27 C -0.14 -1.66 8.70 -39.52 -0.34 -2.01 16 28 H 0.06 0.39 6.55 -51.93 -0.34 0.05 16 29 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.07 0.49 5.62 -51.93 -0.29 0.20 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.55 7.40 -51.93 -0.38 0.17 16 34 H 0.06 0.49 6.68 -51.93 -0.35 0.14 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.41 3.98 6.90 -34.47 -0.24 3.75 16 38 H 0.12 1.89 7.29 -51.93 -0.38 1.51 16 39 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.13 1.14 6.75 -52.49 -0.35 0.79 16 44 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.14 1.49 8.04 -52.48 -0.42 1.07 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -34.88 383.98 -9.76 -44.64 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.88 Total: 2.39 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -1.76 Total: -31.03 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.71 Total: -38.98 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -2.06 Total: -41.17 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 44.76 SS G_CDS: -0.58 Total: 44.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.88 -9.76 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079020351.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.208 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds