Wall clock time and date at job start Tue Mar 31 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99498 * 2 1 4 4 C 1.39183 * 111.00055 * 123.95157 * 2 1 3 5 5 N 1.32285 * 119.74495 * 341.99494 * 4 2 1 6 6 C 1.32022 * 121.68921 * 180.33417 * 5 4 2 7 7 C 1.38048 * 120.99843 * 359.66041 * 6 5 4 8 8 C 1.38796 * 119.38270 * 0.02562 * 7 6 5 9 9 C 1.38890 * 118.44790 * 359.97438 * 8 7 6 10 10 N 1.40068 * 120.51358 * 180.02562 * 9 8 7 11 11 C 1.34769 * 120.00191 * 334.79799 * 10 9 8 12 12 O 1.21571 * 120.00029 * 4.43575 * 11 10 9 13 13 C 1.47836 * 120.00080 * 184.43916 * 11 10 9 14 14 C 1.39690 * 120.10143 * 359.97231 * 13 11 10 15 15 C 1.38037 * 120.03578 * 180.02562 * 14 13 11 16 16 C 1.38181 * 120.24693 * 359.70508 * 15 14 13 17 17 C 1.39188 * 120.20208 * 0.55347 * 16 15 14 18 18 S 1.76200 * 120.01881 * 179.74623 * 17 16 15 19 19 C 1.76203 * 99.99871 * 265.12138 * 18 17 16 20 20 H 1.08002 * 119.99974 * 4.99101 * 19 18 17 21 21 C 1.38726 * 119.99855 * 184.98978 * 19 18 17 22 22 N 1.31622 * 120.00031 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00204 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46924 * 89.99603 * 23 21 19 25 25 H 1.48500 * 109.47027 * 209.99936 * 23 21 19 26 26 H 1.48499 * 109.46695 * 329.99649 * 23 21 19 27 27 C 1.38865 * 119.95736 * 359.47192 * 17 16 15 28 28 H 1.08993 * 109.47455 * 296.04289 * 1 2 3 29 29 H 1.09000 * 109.47158 * 56.05084 * 1 2 3 30 30 H 1.09007 * 109.46606 * 176.04498 * 1 2 3 31 31 H 1.08998 * 109.47235 * 183.42385 * 3 2 1 32 32 H 1.08999 * 109.47325 * 303.42422 * 3 2 1 33 33 H 1.09009 * 109.47138 * 63.42601 * 3 2 1 34 34 H 1.08003 * 119.50432 * 179.67905 * 6 5 4 35 35 H 1.08002 * 120.30500 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.77373 * 179.97438 * 8 7 6 37 37 H 0.97003 * 119.99456 * 154.80168 * 10 9 8 38 38 H 1.07999 * 119.97889 * 0.03112 * 14 13 11 39 39 H 1.07999 * 119.87611 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.89424 * 180.27666 * 16 15 14 41 41 H 0.97000 * 120.00168 * 180.02562 * 22 21 19 42 42 H 1.08002 * 120.11911 * 180.27603 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9678 -0.7257 1.0778 5 7 1.1832 -0.9920 2.1091 6 6 1.6182 -1.6714 3.1542 7 6 2.9159 -2.1393 3.2081 8 6 3.7744 -1.8897 2.1464 9 6 3.2913 -1.1727 1.0594 10 7 4.1201 -0.8968 -0.0356 11 6 5.4572 -0.8503 0.1262 12 8 5.9493 -1.1268 1.2029 13 6 6.3257 -0.4630 -1.0058 14 6 5.7627 -0.1453 -2.2441 15 6 6.5749 0.2156 -3.3002 16 6 7.9459 0.2704 -3.1368 17 6 8.5181 -0.0492 -1.9089 18 16 10.2674 0.0158 -1.7078 19 6 10.6739 -1.6704 -2.0178 20 1 9.9055 -2.3627 -2.3289 21 6 11.9809 -2.1087 -1.8624 22 7 12.2845 -3.3684 -2.0934 23 14 13.3097 -0.9114 -1.3236 24 1 13.3983 -0.9045 0.1587 25 1 14.6146 -1.3300 -1.8956 26 1 12.9724 0.4520 -1.8058 27 6 7.7090 -0.4139 -0.8408 28 1 -0.3634 0.4512 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0832 1.3432 -0.0614 32 1 1.5970 1.9135 -0.8577 33 1 1.6962 1.8755 0.9192 34 1 0.9486 -1.8645 3.9793 35 1 3.2598 -2.6943 4.0684 36 1 4.7942 -2.2449 2.1651 37 1 3.7315 -0.7391 -0.9103 38 1 4.6913 -0.1821 -2.3751 39 1 6.1369 0.4611 -4.2563 40 1 8.5758 0.5579 -3.9658 41 1 13.1983 -3.6750 -1.9844 42 1 8.1499 -0.6581 0.1144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079024358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:49 Heat of formation + Delta-G solvation = 51.751318 kcal Electronic energy + Delta-G solvation = -26267.008387 eV Core-core repulsion = 22531.948446 eV Total energy + Delta-G solvation = -3735.059941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35541 -39.84079 -38.08955 -37.14107 -35.22507 -32.53888 -32.14837 -31.14598 -30.74359 -29.50272 -28.04036 -25.72199 -25.33527 -24.63301 -23.03895 -22.30522 -21.91125 -20.52854 -18.85452 -17.84441 -17.39527 -17.13357 -16.63268 -15.96907 -15.56953 -15.41766 -15.20041 -15.04887 -14.86939 -14.56492 -14.31762 -14.02386 -13.62554 -13.54558 -13.31225 -12.97194 -12.85508 -12.56070 -12.52399 -12.28066 -12.05824 -12.00711 -11.40795 -11.28666 -11.13838 -11.11163 -10.69711 -10.39685 -10.01941 -9.95206 -9.65527 -9.30194 -9.12610 -9.08253 -8.79399 -8.25183 -8.11382 -7.18765 -6.36640 -4.12899 0.70000 1.01299 1.18394 1.50082 2.70913 2.82429 2.89749 3.21881 3.24154 3.35316 3.45314 3.62883 3.95773 4.22434 4.27144 4.50252 4.68272 4.79691 4.84130 4.91983 4.97735 4.99270 5.01378 5.02256 5.08991 5.17794 5.23870 5.35607 5.46093 5.56150 5.64950 5.66733 5.70969 5.83185 5.96886 6.06658 6.09900 6.30603 6.38906 6.42516 6.47897 6.73271 6.88482 7.00046 7.21232 7.70362 7.87397 7.96726 8.40587 9.07053 10.72740 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.018573 B = 0.002564 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.241293 B =10917.813252 C =11908.995861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.490 5.490 3 C 0.024 3.976 4 C 0.267 3.733 5 N -0.497 5.497 6 C 0.090 3.910 7 C -0.165 4.165 8 C -0.082 4.082 9 C 0.113 3.887 10 N -0.657 5.657 11 C 0.565 3.435 12 O -0.515 6.515 13 C -0.156 4.156 14 C -0.084 4.084 15 C -0.137 4.137 16 C -0.047 4.047 17 C -0.085 4.085 18 S -0.110 6.110 19 C -0.510 4.510 20 H 0.091 0.909 21 C 0.096 3.904 22 N -0.875 5.875 23 Si 0.857 3.143 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.239 1.239 27 C -0.013 4.013 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.156 0.844 35 H 0.139 0.861 36 H 0.169 0.831 37 H 0.417 0.583 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.272 0.728 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.759 7.710 3.583 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.210 5.210 3 C -0.123 4.123 4 C 0.034 3.966 5 N -0.210 5.210 6 C -0.068 4.068 7 C -0.186 4.186 8 C -0.110 4.110 9 C 0.013 3.987 10 N -0.302 5.302 11 C 0.355 3.645 12 O -0.392 6.392 13 C -0.160 4.160 14 C -0.103 4.103 15 C -0.157 4.157 16 C -0.068 4.068 17 C -0.196 4.196 18 S 0.124 5.876 19 C -0.657 4.657 20 H 0.109 0.891 21 C -0.114 4.114 22 N -0.511 5.511 23 Si 0.682 3.318 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.163 1.163 27 C -0.034 4.034 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.186 0.814 37 H 0.256 0.744 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.082 0.918 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.166 8.375 4.070 24.043 hybrid contribution 0.188 -0.755 0.160 0.794 sum -21.978 7.620 4.230 23.643 Atomic orbital electron populations 1.22235 0.84609 1.03038 1.01269 1.59596 1.10824 1.14148 1.36384 1.22521 1.01414 0.86495 1.01878 1.19523 0.89657 0.97759 0.89688 1.67597 1.37449 1.15668 1.00293 1.22448 0.94307 0.94861 0.95192 1.22071 0.94424 1.02163 0.99928 1.22173 1.02480 0.94492 0.91896 1.18292 0.90335 0.99300 0.90744 1.43373 1.05810 1.69716 1.11294 1.18584 0.81129 0.76360 0.88396 1.90694 1.74182 1.47285 1.27001 1.19661 0.94081 1.08777 0.93529 1.21207 0.99162 0.97639 0.92248 1.21062 0.93668 1.02242 0.98739 1.21952 0.94555 0.93709 0.96592 1.22210 1.00699 1.01832 0.94837 1.83106 0.94213 1.17487 1.92833 1.22235 0.98745 0.91393 1.53344 0.89054 1.24741 0.97856 0.95031 0.93726 1.69921 1.20283 1.14311 1.46579 0.86740 0.81836 0.82877 0.80354 1.19009 1.19754 1.16324 1.21900 0.90833 0.91312 0.99381 0.93351 0.91179 0.91068 0.90732 0.89878 0.94328 0.82692 0.84357 0.81421 0.74378 0.86142 0.85389 0.84742 0.91755 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 8.90 60.06 0.53 0.82 16 2 N -0.49 -4.66 4.41 -188.75 -0.83 -5.49 16 3 C 0.02 0.19 9.31 60.07 0.56 0.75 16 4 C 0.27 3.10 6.02 -154.72 -0.93 2.17 16 5 N -0.50 -5.70 8.81 -12.25 -0.11 -5.81 16 6 C 0.09 0.89 11.17 -17.54 -0.20 0.69 16 7 C -0.16 -1.69 10.10 -39.44 -0.40 -2.09 16 8 C -0.08 -1.06 8.91 -39.13 -0.35 -1.41 16 9 C 0.11 1.43 6.29 -83.30 -0.52 0.91 16 10 N -0.66 -7.94 4.14 -10.47 -0.04 -7.98 16 11 C 0.56 8.52 7.67 -12.34 -0.09 8.42 16 12 O -0.52 -9.18 13.29 5.30 0.07 -9.11 16 13 C -0.16 -2.41 5.87 -105.00 -0.62 -3.03 16 14 C -0.08 -1.04 9.54 -39.11 -0.37 -1.42 16 15 C -0.14 -1.79 10.02 -39.68 -0.40 -2.18 16 16 C -0.05 -0.78 9.79 -39.25 -0.38 -1.16 16 17 C -0.09 -1.69 5.45 -39.00 -0.21 -1.90 16 18 S -0.11 -2.60 19.38 -107.50 -2.08 -4.68 16 19 C -0.51 -14.35 10.01 30.91 0.31 -14.04 16 20 H 0.09 2.79 8.02 -52.49 -0.42 2.37 16 21 C 0.10 2.71 5.50 -17.46 -0.10 2.62 16 22 N -0.87 -25.96 13.97 55.49 0.78 -25.19 16 23 Si 0.86 20.69 27.74 -169.99 -4.71 15.97 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.24 -5.57 6.74 56.52 0.38 -5.19 16 27 C -0.01 -0.24 9.34 -38.92 -0.36 -0.60 16 28 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.66 6.93 -51.93 -0.36 0.30 16 32 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 33 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.16 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.17 2.43 5.59 -52.48 -0.29 2.14 16 37 H 0.42 4.14 6.23 -40.82 -0.25 3.89 16 38 H 0.12 1.06 6.41 -52.49 -0.34 0.72 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.14 2.86 7.65 -52.49 -0.40 2.46 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -32.41 368.14 -9.92 -42.34 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.00 Total: 5.86 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -3.53 Total: -11.45 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.21 Total: -44.47 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.71 Total: 15.97 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.08 Total: -4.68 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.41 -9.92 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079024358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.089 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds