Wall clock time and date at job start Tue Mar 31 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47104 * 2 1 4 4 N 1.46501 * 109.47076 * 119.99503 * 2 1 3 5 5 C 1.39668 * 119.99971 * 275.00653 * 4 2 1 6 6 C 1.38928 * 120.07714 * 359.97347 * 5 4 2 7 7 C 1.38084 * 119.92372 * 180.02562 * 6 5 4 8 8 C 1.38309 * 120.07930 * 359.97438 * 7 6 5 9 9 C 1.38261 * 120.14486 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.96290 * 180.27618 * 9 8 7 11 11 N 1.46496 * 109.47127 * 269.72936 * 10 9 8 12 12 C 1.34950 * 126.03928 * 125.00108 * 11 10 9 13 13 C 1.35314 * 107.74780 * 179.97438 * 12 11 10 14 14 C 1.39877 * 107.91817 * 359.97438 * 13 12 11 15 15 N 1.30837 * 108.20215 * 359.73829 * 14 13 12 16 16 C 1.38129 * 120.07732 * 0.02562 * 9 8 7 17 17 C 1.50698 * 109.47077 * 239.99562 * 2 1 3 18 18 O 1.21277 * 120.00028 * 245.86842 * 17 2 1 19 19 N 1.34779 * 119.99813 * 65.88014 * 17 2 1 20 20 C 1.46501 * 120.00133 * 4.63522 * 19 17 2 21 21 C 1.46504 * 119.99507 * 184.64170 * 19 17 2 22 22 C 1.50702 * 109.46925 * 89.99753 * 21 19 17 23 23 H 1.07998 * 120.00066 * 359.97438 * 22 21 19 24 24 C 1.37884 * 119.99845 * 179.97438 * 22 21 19 25 25 N 1.31518 * 119.99869 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99743 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47432 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46843 * 120.00303 * 26 24 22 29 29 H 1.48507 * 109.47184 * 240.00032 * 26 24 22 30 30 H 1.08995 * 109.47785 * 309.36871 * 1 2 3 31 31 H 1.09000 * 109.47043 * 69.36613 * 1 2 3 32 32 H 1.09007 * 109.47251 * 189.36065 * 1 2 3 33 33 H 0.96998 * 119.99865 * 95.00104 * 4 2 1 34 34 H 1.07996 * 120.03970 * 0.04418 * 6 5 4 35 35 H 1.07999 * 119.95965 * 180.02562 * 7 6 5 36 36 H 1.07995 * 119.92532 * 180.02562 * 8 7 6 37 37 H 1.09010 * 109.46481 * 29.72640 * 10 9 8 38 38 H 1.08993 * 109.47372 * 149.71991 * 10 9 8 39 39 H 1.07996 * 126.12657 * 359.97438 * 12 11 10 40 40 H 1.07993 * 126.04178 * 179.97438 * 13 12 11 41 41 H 1.07998 * 125.89834 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.03808 * 180.02562 * 16 9 8 43 43 H 1.09001 * 109.46695 * 95.82193 * 20 19 17 44 44 H 1.09003 * 109.46963 * 215.81780 * 20 19 17 45 45 H 1.08990 * 109.47018 * 335.82223 * 20 19 17 46 46 H 1.09002 * 109.47008 * 209.99407 * 21 19 17 47 47 H 1.08992 * 109.47335 * 329.99636 * 21 19 17 48 48 H 0.96996 * 119.99592 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1516 0.0063 2.3993 6 6 1.8220 1.3544 2.4633 7 6 1.9555 2.0404 3.6542 8 6 2.4161 1.3869 4.7828 9 6 2.7450 0.0453 4.7226 10 6 3.2406 -0.6643 5.9563 11 7 4.7008 -0.5665 6.0224 12 6 5.4180 -0.0813 7.0575 13 6 6.7275 -0.1643 6.7269 14 6 6.8135 -0.7198 5.4460 15 7 5.5996 -0.9667 5.0252 16 6 2.6149 -0.6467 3.5342 17 6 2.0323 -0.7105 -1.2304 18 8 2.6393 -1.7549 -1.1222 19 7 1.8072 -0.1851 -2.4510 20 6 1.1645 1.1253 -2.5773 21 6 2.2052 -0.9247 -3.6514 22 6 1.0677 -1.8064 -4.0984 23 1 0.1412 -1.8154 -3.5435 24 6 1.2099 -2.6017 -5.2157 25 7 2.3384 -2.5911 -5.8911 26 14 -0.1998 -3.6952 -5.7693 27 1 -1.3502 -3.5252 -4.8459 28 1 -0.6097 -3.3156 -7.1452 29 1 0.2398 -5.1136 -5.7573 30 1 -0.3634 0.6518 0.7944 31 1 -0.3633 0.3621 -0.9617 32 1 -0.3634 -1.0140 0.1672 33 1 2.2490 -1.6317 1.1527 34 1 1.4616 1.8652 1.5827 35 1 1.6991 3.0883 3.7047 36 1 2.5192 1.9257 5.7130 37 1 2.8049 -0.2009 6.8416 38 1 2.9481 -1.7134 5.9142 39 1 5.0184 0.3041 7.9838 40 1 7.5591 0.1439 7.3430 41 1 7.7249 -0.9156 4.9007 42 1 2.8715 -1.6948 3.4880 43 1 1.9280 1.8954 -2.6869 44 1 0.5162 1.1290 -3.4536 45 1 0.5710 1.3263 -1.6855 46 1 2.4533 -0.2210 -4.4461 47 1 3.0758 -1.5407 -3.4267 48 1 2.4385 -3.1509 -6.6769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079029550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:59 Heat of formation + Delta-G solvation = 87.017065 kcal Electronic energy + Delta-G solvation = -28883.901431 eV Core-core repulsion = 24941.169613 eV Total energy + Delta-G solvation = -3942.731818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.26080 -39.97633 -38.99934 -35.99923 -34.98823 -33.87887 -32.75913 -31.52778 -30.84597 -29.92733 -28.41307 -27.59354 -26.40319 -26.12614 -24.12083 -22.66142 -22.52386 -21.41221 -21.16124 -20.21292 -18.73242 -17.72346 -17.25449 -16.60654 -16.50094 -16.00838 -15.75055 -15.29049 -14.90672 -14.74536 -14.54528 -14.41458 -14.02669 -13.91969 -13.68887 -13.54282 -13.17436 -12.97037 -12.90277 -12.69601 -12.49527 -12.40893 -12.10615 -12.04444 -11.61754 -11.56436 -11.33762 -11.22124 -11.05443 -10.86700 -10.72601 -10.63634 -10.21329 -10.15597 -9.66794 -9.56097 -9.01879 -8.95221 -8.72233 -8.48817 -7.74339 -7.37514 -6.09394 -4.14683 1.17430 1.57566 1.79209 2.50870 2.74287 3.22803 3.26101 3.30534 3.34205 3.38391 3.83615 3.96956 4.24449 4.39609 4.53234 4.63004 4.84121 4.85930 4.93490 5.00401 5.08197 5.17252 5.22919 5.25087 5.31477 5.41178 5.46177 5.51200 5.58324 5.66016 5.73273 5.80617 5.85184 5.86580 5.92585 6.10385 6.28548 6.28796 6.42257 6.51350 6.53002 6.74572 6.85276 6.96201 7.34881 7.39011 7.45844 7.60542 7.84151 7.86585 8.16756 8.29802 8.80416 8.95790 9.50519 10.98784 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.017068 B = 0.002179 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.078293 B =12845.834417 C =13586.473060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 H 0.096 0.904 4 N -0.723 5.723 5 C 0.228 3.772 6 C -0.194 4.194 7 C -0.074 4.074 8 C -0.169 4.169 9 C -0.065 4.065 10 C 0.175 3.825 11 N -0.366 5.366 12 C 0.048 3.952 13 C -0.277 4.277 14 C 0.038 3.962 15 N -0.280 5.280 16 C -0.160 4.160 17 C 0.503 3.497 18 O -0.538 6.538 19 N -0.596 5.596 20 C 0.066 3.934 21 C 0.244 3.756 22 C -0.528 4.528 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.411 0.589 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.171 0.829 40 H 0.144 0.856 41 H 0.180 0.820 42 H 0.122 0.878 43 H 0.047 0.953 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.034 0.966 47 H 0.045 0.955 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 11.178 25.449 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 H 0.113 0.887 4 N -0.352 5.352 5 C 0.123 3.877 6 C -0.217 4.217 7 C -0.093 4.093 8 C -0.190 4.190 9 C -0.066 4.066 10 C 0.055 3.945 11 N -0.148 5.148 12 C -0.098 4.098 13 C -0.307 4.307 14 C -0.148 4.148 15 N -0.101 5.101 16 C -0.183 4.183 17 C 0.288 3.712 18 O -0.415 6.415 19 N -0.328 5.328 20 C -0.077 4.077 21 C 0.125 3.875 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.142 4.142 25 N -0.532 5.532 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.249 0.751 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.188 0.812 40 H 0.162 0.838 41 H 0.197 0.803 42 H 0.140 0.860 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.462 10.157 24.173 26.224 hybrid contribution -0.120 -0.509 0.144 0.543 sum -0.582 9.648 24.317 26.168 Atomic orbital electron populations 1.22407 0.93744 1.03589 1.03140 1.20765 0.95078 0.97098 0.85045 0.88671 1.44560 1.71777 1.13185 1.05715 1.17781 0.92696 0.91333 0.85889 1.20736 1.08875 0.93110 0.98992 1.20786 0.97240 0.99113 0.92127 1.20631 1.05733 0.93829 0.98791 1.19347 0.99286 0.94118 0.93889 1.20594 0.74552 1.01867 0.97499 1.48806 1.06103 1.47680 1.12217 1.22546 0.92531 1.00524 0.94167 1.21491 0.96227 1.13958 0.98997 1.23933 0.96140 0.99303 0.95464 1.77499 0.99151 1.21545 1.11912 1.20398 1.06102 1.00410 0.91421 1.20236 0.80620 0.85827 0.84519 1.90661 1.41362 1.23543 1.85924 1.48073 1.58476 1.19100 1.07121 1.21993 0.97726 0.84909 1.03103 1.19336 0.96846 0.91441 0.79862 1.21442 0.99976 1.24329 1.10905 0.92373 1.24952 0.96042 0.96801 0.96361 1.69944 1.24660 1.39983 1.18598 0.86433 0.82117 0.80483 0.78325 1.19809 1.20911 1.20840 0.91627 0.89991 0.91470 0.75121 0.86003 0.86226 0.86911 0.87862 0.89027 0.81209 0.83793 0.80258 0.86022 0.93425 0.90630 0.91148 0.94821 0.93686 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.91 37.16 0.33 -1.87 16 2 C 0.13 1.95 1.84 -69.08 -0.13 1.82 16 3 H 0.10 1.26 6.07 -51.93 -0.32 0.94 16 4 N -0.72 -10.86 5.16 -53.29 -0.27 -11.13 16 5 C 0.23 3.07 6.64 -83.79 -0.56 2.52 16 6 C -0.19 -2.31 8.93 -39.38 -0.35 -2.66 16 7 C -0.07 -0.77 10.04 -39.61 -0.40 -1.16 16 8 C -0.17 -1.70 9.69 -39.55 -0.38 -2.09 16 9 C -0.06 -0.70 5.32 -104.65 -0.56 -1.26 16 10 C 0.18 1.48 6.63 -5.19 -0.03 1.45 16 11 N -0.37 -3.85 3.67 -62.55 -0.23 -4.08 16 12 C 0.05 0.41 11.45 -17.22 -0.20 0.21 16 13 C -0.28 -2.50 10.80 -40.01 -0.43 -2.94 16 14 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 15 N -0.28 -3.73 12.41 30.63 0.38 -3.35 16 16 C -0.16 -2.04 9.55 -39.38 -0.38 -2.42 16 17 C 0.50 10.28 7.05 -10.99 -0.08 10.20 16 18 O -0.54 -13.32 15.37 5.56 0.09 -13.23 16 19 N -0.60 -12.35 2.86 -182.96 -0.52 -12.87 16 20 C 0.07 1.00 9.74 59.85 0.58 1.59 16 21 C 0.24 6.34 5.22 -5.19 -0.03 6.31 16 22 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 23 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 25 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 26 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 27 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 31 H 0.08 1.04 5.41 -51.93 -0.28 0.75 16 32 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.41 6.73 7.75 -40.82 -0.32 6.42 16 34 H 0.12 1.30 5.99 -52.49 -0.31 0.99 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.11 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.10 0.53 8.01 -51.92 -0.42 0.11 16 38 H 0.09 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 45 H 0.07 0.84 4.11 -51.93 -0.21 0.63 16 46 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 47 H 0.05 1.33 7.36 -51.93 -0.38 0.95 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -35.44 399.68 -8.88 -44.32 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.82 Total: 6.91 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.23 Total: -3.54 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.09 Total: -57.16 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.44 -8.88 -44.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079029550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.338 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds