Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48507 * 109.47062 * 270.60382 * 3 2 1 5 5 H 1.48498 * 109.47058 * 30.60077 * 3 2 1 6 6 H 1.48495 * 109.47237 * 150.60370 * 3 2 1 7 7 C 1.38818 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00167 * 336.79557 * 7 2 1 9 9 N 1.36937 * 119.99703 * 156.80071 * 7 2 1 10 10 C 1.47755 * 125.82162 * 153.81954 * 9 7 2 11 11 C 1.54909 * 104.84287 * 204.25086 * 10 9 7 12 12 C 1.55161 * 101.57764 * 322.90472 * 11 10 9 13 13 C 1.47015 * 125.65213 * 333.82076 * 9 7 2 14 14 H 1.08996 * 109.88708 * 59.32496 * 13 9 7 15 15 C 1.50699 * 109.88157 * 298.31172 * 13 9 7 16 16 C 1.38242 * 120.00490 * 341.71535 * 15 13 9 17 17 C 1.38216 * 120.00799 * 179.97438 * 16 15 13 18 18 C 1.38264 * 120.01251 * 359.97438 * 17 16 15 19 19 C 1.38201 * 120.00702 * 0.23848 * 18 17 16 20 20 C 1.38272 * 120.00430 * 161.69530 * 15 13 9 21 21 I 2.09506 * 120.00571 * 0.02562 * 20 15 13 22 22 H 0.97001 * 119.99579 * 0.02562 * 1 2 3 23 23 H 1.09003 * 110.43389 * 85.36646 * 10 9 7 24 24 H 1.09004 * 110.38119 * 323.10521 * 10 9 7 25 25 H 1.08999 * 111.00035 * 204.83341 * 11 10 9 26 26 H 1.09000 * 111.03749 * 80.99314 * 11 10 9 27 27 H 1.08998 * 110.71768 * 277.13658 * 12 11 10 28 28 H 1.08999 * 110.71308 * 153.86616 * 12 11 10 29 29 H 1.08000 * 119.99394 * 359.97438 * 16 15 13 30 30 H 1.08007 * 119.99422 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.99342 * 179.97438 * 18 17 16 32 32 H 1.07991 * 120.00384 * 179.74296 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4849 2.0537 -1.4001 5 1 1.4541 2.6489 0.7127 6 1 3.5540 1.4364 0.6872 7 6 2.0102 -1.2022 0.0005 8 1 1.5357 -2.0995 0.3694 9 7 3.2965 -1.2504 -0.4666 10 6 4.3268 -2.2298 -0.0636 11 6 5.6768 -1.5240 -0.3449 12 6 5.3573 -0.7499 -1.6511 13 6 3.8841 -0.3342 -1.4549 14 1 3.8340 0.6904 -1.0865 15 6 3.1419 -0.4456 -2.7618 16 6 2.3516 -1.5509 -3.0159 17 6 1.6704 -1.6529 -4.2142 18 6 1.7788 -0.6492 -5.1589 19 6 2.5723 0.4541 -4.9073 20 6 3.2510 0.5581 -3.7066 21 53 4.4488 2.2334 -3.3220 22 1 -0.4849 0.8401 -0.0004 23 1 4.2421 -3.1383 -0.6599 24 1 4.2344 -2.4631 0.9971 25 1 6.4718 -2.2519 -0.5066 26 1 5.9356 -0.8386 0.4622 27 1 5.4623 -1.3996 -2.5199 28 1 5.9965 0.1280 -1.7451 29 1 2.2664 -2.3349 -2.2780 30 1 1.0533 -2.5168 -4.4128 31 1 1.2468 -0.7293 -6.0954 32 1 2.6602 1.2360 -5.6469 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079305708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = 57.093605 kcal Electronic energy + Delta-G solvation = -16807.197689 eV Core-core repulsion = 14206.179687 eV Total energy + Delta-G solvation = -2601.018002 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 343.013 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.93258 -38.62529 -34.63683 -33.59763 -32.38368 -31.67328 -29.09558 -28.41124 -26.22581 -23.65916 -22.69618 -21.87013 -21.41515 -18.92268 -17.78377 -17.11721 -16.47204 -15.73555 -15.57154 -15.31965 -14.97371 -14.61810 -14.01969 -13.75951 -13.67653 -13.25734 -13.04882 -12.91116 -12.56747 -12.22324 -12.06759 -11.82335 -11.73776 -11.61853 -11.23701 -11.15980 -10.74344 -10.45781 -9.65958 -9.49888 -8.90745 -8.17494 -5.45126 0.20883 0.31891 0.53922 1.36963 1.41373 1.47280 2.45861 2.82226 3.05110 3.39311 3.79192 3.95348 4.05168 4.07758 4.24623 4.26871 4.46791 4.52920 4.69469 4.77777 4.92228 4.94104 5.04414 5.11632 5.16908 5.19468 5.39216 5.40059 5.60168 5.69260 5.86068 6.08556 6.13566 6.82075 7.58612 8.18371 9.01573 Molecular weight = 343.01amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.008906 C = 0.008350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.606935 B = 3143.179191 C = 3352.645719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.007 4.007 3 Si 0.893 3.107 4 H -0.224 1.224 5 H -0.324 1.324 6 H -0.276 1.276 7 C -0.228 4.228 8 H 0.056 0.944 9 N -0.615 5.615 10 C 0.120 3.880 11 C -0.123 4.123 12 C -0.116 4.116 13 C 0.164 3.836 14 H 0.044 0.956 15 C -0.061 4.061 16 C -0.089 4.089 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.098 4.098 20 C -0.116 4.116 21 I -0.049 7.049 22 H 0.258 0.742 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 2.102 -12.014 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.204 4.204 3 Si 0.723 3.277 4 H -0.148 1.148 5 H -0.254 1.254 6 H -0.203 1.203 7 C -0.356 4.356 8 H 0.074 0.926 9 N -0.340 5.340 10 C -0.004 4.004 11 C -0.161 4.161 12 C -0.154 4.154 13 C 0.058 3.942 14 H 0.061 0.939 15 C -0.065 4.065 16 C -0.109 4.109 17 C -0.133 4.133 18 C -0.142 4.142 19 C -0.119 4.119 20 C -0.256 4.256 21 I 0.101 6.899 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.124 0.876 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.158 0.842 31 H 0.176 0.824 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.995 3.339 -11.696 17.800 hybrid contribution -1.111 -0.077 0.464 1.207 sum 11.884 3.262 -11.232 16.675 Atomic orbital electron populations 1.69962 1.07169 1.26732 1.55043 1.25485 0.95298 0.99796 0.99792 0.86619 0.78014 0.81942 0.81129 1.14823 1.25407 1.20255 1.18307 0.86731 0.93549 1.37030 0.92643 1.44924 1.09047 1.35148 1.44868 1.21985 0.87873 0.92373 0.98176 1.22760 0.97134 0.99654 0.96571 1.22581 0.92720 1.01025 0.99055 1.20524 0.93147 0.94555 0.85986 0.93861 1.20454 0.97295 0.93415 0.95373 1.21109 0.95341 0.97994 0.96473 1.21554 0.98371 0.99989 0.93356 1.21417 0.99013 0.93282 1.00510 1.21206 0.96318 0.99111 0.95271 1.24182 1.05127 0.97731 0.98596 1.96443 1.63981 1.32706 1.96811 0.93346 0.94276 0.93579 0.87648 0.91672 0.90298 0.89852 0.86656 0.84218 0.82430 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.20 13.97 21.65 0.30 -58.89 16 2 C -0.01 -0.43 5.32 84.86 0.45 0.03 16 3 Si 0.89 46.03 24.31 68.60 1.67 47.70 16 4 H -0.22 -10.43 4.81 99.48 0.48 -9.95 16 5 H -0.32 -17.59 7.11 99.48 0.71 -16.88 16 6 H -0.28 -14.12 6.98 99.48 0.69 -13.42 16 7 C -0.23 -12.70 8.88 84.03 0.75 -11.95 16 8 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 9 N -0.61 -28.41 1.93 -671.56 -1.30 -29.70 16 10 C 0.12 4.45 7.25 86.79 0.63 5.08 16 11 C -0.12 -3.65 7.09 31.99 0.23 -3.42 16 12 C -0.12 -3.72 6.06 31.78 0.19 -3.53 16 13 C 0.16 6.74 1.44 44.60 0.06 6.81 16 14 H 0.04 1.95 2.24 -2.39 -0.01 1.94 16 15 C -0.06 -2.43 4.35 -19.86 -0.09 -2.52 16 16 C -0.09 -3.60 8.79 22.27 0.20 -3.40 16 17 C -0.11 -3.79 10.05 22.27 0.22 -3.57 16 18 C -0.12 -3.51 10.05 22.27 0.22 -3.29 16 19 C -0.10 -3.00 9.76 22.28 0.22 -2.78 16 20 C -0.12 -4.11 6.04 22.30 0.13 -3.97 16 21 I -0.05 -1.54 35.64 -18.82 -0.67 -2.21 16 22 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 23 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.36 7.84 -2.39 -0.02 2.34 16 28 H 0.08 2.46 7.64 -2.39 -0.02 2.44 16 29 H 0.12 5.16 6.55 -2.91 -0.02 5.14 16 30 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 31 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 32 H 0.14 3.57 8.06 -2.92 -0.02 3.55 16 Total: -1.00 -65.86 277.18 4.10 -61.76 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.88 Total: 7.86 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 3.22 Total: -26.51 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -0.99 Total: -88.59 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.67 Total: 47.70 kcal Atomic # 53 Polarization: -1.54 SS G_CDS: -0.67 Total: -2.21 kcal Total: -65.86 4.10 -61.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079305708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.850 kcal (2) G-P(sol) polarization free energy of solvation -65.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds