Wall clock time and date at job start Tue Mar 31 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38343 * 120.44823 * 2 1 4 4 C 1.38843 * 118.50251 * 179.97438 * 3 2 1 5 5 N 1.48005 * 120.33433 * 180.30017 * 4 3 2 6 6 O 1.21798 * 120.00138 * 179.72101 * 5 4 3 7 7 O 1.21804 * 119.99819 * 359.71640 * 5 4 3 8 8 C 1.38068 * 119.32958 * 0.02562 * 4 3 2 9 9 N 1.31938 * 120.85361 * 359.97438 * 8 4 3 10 10 C 1.32424 * 121.62515 * 0.02562 * 9 8 4 11 11 N 1.39008 * 119.70630 * 180.02562 * 10 9 8 12 12 C 1.46500 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.53001 * 109.46750 * 180.02562 * 12 11 10 14 14 O 1.42900 * 109.47155 * 65.00454 * 13 12 11 15 15 C 1.35675 * 116.99945 * 179.97438 * 14 13 12 16 16 C 1.39309 * 119.81712 * 359.72034 * 15 14 13 17 17 C 1.36444 * 120.18684 * 179.75766 * 16 15 14 18 18 C 1.40835 * 119.80483 * 0.51823 * 17 16 15 19 19 C 1.41216 * 120.17269 * 179.71799 * 18 17 16 20 20 H 1.08003 * 119.99898 * 155.16703 * 19 18 17 21 21 C 1.39894 * 120.00036 * 335.15955 * 19 18 17 22 22 N 1.30870 * 120.00407 * 342.16474 * 21 19 18 23 23 Si 1.86801 * 119.99662 * 162.16021 * 21 19 18 24 24 H 1.48508 * 109.47017 * 94.65954 * 23 21 19 25 25 H 1.48496 * 109.47438 * 214.65898 * 23 21 19 26 26 H 1.48501 * 109.47353 * 334.66039 * 23 21 19 27 27 C 1.40828 * 119.64471 * 359.73793 * 18 17 16 28 28 C 1.36432 * 119.81138 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.47359 * 269.97634 * 1 2 3 30 30 H 1.08995 * 109.47220 * 29.97932 * 1 2 3 31 31 H 1.09003 * 109.46948 * 149.97545 * 1 2 3 32 32 H 1.07992 * 120.74972 * 0.04659 * 3 2 1 33 33 H 1.07994 * 119.57498 * 179.97438 * 8 4 3 34 34 H 0.97006 * 119.99970 * 180.02562 * 11 10 9 35 35 H 1.09005 * 109.46891 * 299.99843 * 12 11 10 36 36 H 1.08996 * 109.47162 * 59.99821 * 12 11 10 37 37 H 1.09004 * 109.46830 * 184.99794 * 13 12 11 38 38 H 1.09000 * 109.47394 * 304.99714 * 13 12 11 39 39 H 1.08008 * 119.90903 * 0.02562 * 16 15 14 40 40 H 1.08002 * 120.09735 * 180.25091 * 17 16 15 41 41 H 0.96997 * 120.00546 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.09414 * 179.97438 * 27 18 17 43 43 H 1.08012 * 119.90766 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1455 0.0005 5 7 4.3861 2.3968 0.0073 6 8 5.6031 2.3483 0.0128 7 8 3.8195 3.4750 0.0071 8 6 4.2308 -0.0805 0.0005 9 7 3.5362 -1.2023 0.0005 10 6 2.2120 -1.1991 0.0000 11 7 1.5202 -2.4048 0.0005 12 6 2.2562 -3.6715 0.0022 13 6 1.2651 -4.8371 0.0019 14 8 0.5242 -4.8320 -1.2201 15 6 -0.4037 -5.8085 -1.3818 16 6 -0.5914 -6.7585 -0.3804 17 6 -1.5259 -7.7409 -0.5330 18 6 -2.2943 -7.7990 -1.7119 19 6 -3.2595 -8.8159 -1.8805 20 1 -4.0986 -8.6596 -2.5423 21 6 -3.1287 -10.0258 -1.1906 22 7 -1.9741 -10.3641 -0.6758 23 14 -4.6024 -11.1586 -1.0041 24 1 -4.5861 -12.1745 -2.0872 25 1 -4.5397 -11.8394 0.3141 26 1 -5.8529 -10.3624 -1.0910 27 6 -2.0945 -6.8379 -2.7216 28 6 -1.1600 -5.8587 -2.5507 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6878 2.1390 0.0008 33 1 5.3099 -0.1218 0.0005 34 1 0.5502 -2.4075 -0.0002 35 1 2.8837 -3.7283 -0.8873 36 1 2.8823 -3.7268 0.8927 37 1 1.8096 -5.7770 0.0927 38 1 0.5797 -4.7316 0.8428 39 1 0.0016 -6.7148 0.5213 40 1 -1.6730 -8.4743 0.2461 41 1 -1.8833 -11.2032 -0.1977 42 1 -2.6794 -6.8759 -3.6288 43 1 -1.0053 -5.1210 -3.3243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079311307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:54 Heat of formation + Delta-G solvation = 13.237512 kcal Electronic energy + Delta-G solvation = -27712.503436 eV Core-core repulsion = 23533.020540 eV Total energy + Delta-G solvation = -4179.482896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.136 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.34530 -40.94527 -39.08492 -37.08640 -36.69277 -36.04245 -34.34845 -33.51750 -32.35432 -29.95839 -29.70329 -28.77406 -27.94010 -26.20395 -25.00821 -24.12351 -22.56950 -22.34570 -21.16976 -20.43830 -19.17601 -18.93837 -18.52904 -17.67429 -17.52066 -17.30349 -17.14344 -15.67944 -15.64252 -15.27440 -15.18144 -14.56970 -14.18941 -14.08097 -13.87137 -13.78065 -13.69562 -13.28312 -13.06645 -12.69633 -12.52604 -12.36871 -11.99636 -11.72572 -11.68066 -11.45510 -11.37809 -11.28981 -11.21296 -11.16083 -10.99799 -10.70659 -10.32121 -10.26271 -10.09462 -9.93060 -9.51911 -9.14094 -8.42814 -7.80514 -7.17109 -6.85523 -4.38324 -0.31507 0.51367 1.17131 1.25337 2.55147 2.64332 2.82602 3.00515 3.03583 3.04611 3.10953 3.73483 3.78716 3.85552 4.02599 4.06528 4.18138 4.48681 4.62963 4.76218 4.84358 5.02387 5.11465 5.16845 5.27643 5.36085 5.45874 5.46731 5.53149 5.62574 5.73724 5.94796 6.12091 6.17325 6.43001 6.55050 6.64973 6.75022 6.93774 7.14263 7.25353 7.41304 7.41517 7.51236 7.75237 7.86888 8.00334 8.27182 8.50370 8.77440 8.84636 10.09431 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.034955 B = 0.001659 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.838281 B =16878.026450 C =17221.824822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.198 4.198 3 C 0.022 3.978 4 C -0.169 4.169 5 N 0.049 4.951 6 O -0.174 6.174 7 O -0.178 6.178 8 C 0.231 3.769 9 N -0.528 5.528 10 C 0.447 3.553 11 N -0.686 5.686 12 C 0.127 3.873 13 C 0.051 3.949 14 O -0.329 6.329 15 C -0.017 4.017 16 C -0.171 4.171 17 C -0.135 4.135 18 C 0.089 3.911 19 C -0.462 4.462 20 H 0.078 0.922 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.198 4.198 28 C -0.109 4.109 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.182 0.818 34 H 0.421 0.579 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.280 0.720 42 H 0.100 0.900 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 15.311 4.662 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.206 4.206 3 C -0.004 4.004 4 C -0.260 4.260 5 N 0.564 4.436 6 O -0.387 6.387 7 O -0.390 6.390 8 C 0.068 3.932 9 N -0.247 5.247 10 C 0.207 3.793 11 N -0.315 5.315 12 C 0.003 3.997 13 C -0.025 4.025 14 O -0.245 6.245 15 C -0.060 4.060 16 C -0.190 4.190 17 C -0.155 4.155 18 C 0.087 3.913 19 C -0.491 4.491 20 H 0.096 0.904 21 C -0.142 4.142 22 N -0.423 5.423 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.217 4.217 28 C -0.128 4.128 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.178 0.822 33 H 0.199 0.801 34 H 0.261 0.739 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.822 13.608 4.650 15.917 hybrid contribution -1.067 0.212 0.295 1.127 sum 5.755 13.819 4.944 15.765 Atomic orbital electron populations 1.20678 0.88545 1.04035 1.03233 1.20172 0.98240 0.90666 1.11528 1.21022 0.90665 0.99779 0.88888 1.21816 0.92682 0.85479 1.25997 1.43298 1.01118 1.02320 0.96911 1.94528 0.95641 1.94140 1.54356 1.94524 1.73397 1.16534 1.54499 1.22459 1.01288 0.84183 0.85300 1.67687 1.05988 1.28529 1.22449 1.18628 0.88438 0.86510 0.85723 1.45081 1.09561 1.02487 1.74346 1.21624 0.94058 0.80392 1.03590 1.22726 0.94025 0.97709 0.88067 1.85813 1.50811 1.50662 1.37246 1.18490 0.96612 0.92990 0.97919 1.20590 1.02497 0.98033 0.97890 1.20944 0.98122 0.97992 0.98418 1.17615 0.91889 0.91668 0.90119 1.19495 1.08284 0.97850 1.23509 0.90402 1.25893 0.96397 0.98577 0.93349 1.69823 1.23505 1.21854 1.27165 0.86320 0.82205 0.79863 0.78486 1.19547 1.20057 1.18428 1.20601 1.02282 0.99601 0.99241 1.19601 0.98090 1.00026 0.95094 0.90355 0.90249 0.90795 0.82241 0.80074 0.73894 0.89917 0.89357 0.90790 0.92328 0.88805 0.86129 0.90873 0.88171 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.59 36.01 0.35 -0.32 16 2 C -0.20 -1.65 5.92 -104.26 -0.62 -2.27 16 3 C 0.02 0.19 9.34 -39.32 -0.37 -0.18 16 4 C -0.17 -1.70 6.87 -79.79 -0.55 -2.25 16 5 N 0.05 0.59 4.45 34.04 0.15 0.74 16 6 O -0.17 -2.17 18.47 -29.46 -0.54 -2.71 16 7 O -0.18 -2.24 18.52 -29.46 -0.55 -2.79 16 8 C 0.23 2.18 10.71 -17.57 -0.19 2.00 16 9 N -0.53 -5.46 9.56 -12.44 -0.12 -5.58 16 10 C 0.45 4.39 7.46 -155.01 -1.16 3.24 16 11 N -0.69 -6.62 5.56 -60.42 -0.34 -6.96 16 12 C 0.13 1.29 6.08 -4.04 -0.02 1.26 16 13 C 0.05 0.65 4.86 37.16 0.18 0.83 16 14 O -0.33 -5.63 10.07 -18.73 -0.19 -5.82 16 15 C -0.02 -0.36 6.71 -38.78 -0.26 -0.62 16 16 C -0.17 -3.66 8.96 -39.83 -0.36 -4.02 16 17 C -0.14 -3.30 8.64 -39.25 -0.34 -3.64 16 18 C 0.09 2.27 5.57 -106.80 -0.60 1.67 16 19 C -0.46 -11.72 9.04 -37.83 -0.34 -12.06 16 20 H 0.08 1.90 7.91 -52.48 -0.41 1.48 16 21 C 0.07 1.81 5.13 -17.34 -0.09 1.72 16 22 N -0.80 -19.80 10.97 55.54 0.61 -19.19 16 23 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 25 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 27 C -0.20 -4.59 9.74 -39.25 -0.38 -4.98 16 28 C -0.11 -2.35 9.92 -39.83 -0.40 -2.75 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 32 H 0.16 1.09 7.69 -52.49 -0.40 0.69 16 33 H 0.18 1.36 7.61 -52.49 -0.40 0.96 16 34 H 0.42 3.80 6.45 -40.82 -0.26 3.54 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.94 7.63 -51.93 -0.40 0.54 16 38 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 39 H 0.09 1.74 6.27 -52.48 -0.33 1.41 16 40 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 41 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 42 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 43 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -28.46 373.97 -10.44 -38.90 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.94 Total: 7.26 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -5.14 Total: -22.35 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.31 Total: -30.99 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.28 Total: -11.32 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.46 -10.44 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079311307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.135 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds