Wall clock time and date at job start Tue Mar 31 2020 04:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34946 * 126.03953 * 2 1 4 4 C 1.35316 * 107.74772 * 180.14916 * 3 2 1 5 5 C 1.50696 * 126.04056 * 179.87627 * 4 3 2 6 6 C 1.53010 * 109.46823 * 269.70917 * 5 4 3 7 7 H 1.08994 * 110.91432 * 57.44786 * 6 5 4 8 8 C 1.55159 * 111.00026 * 293.54447 * 6 5 4 9 9 C 1.54324 * 102.94134 * 206.42377 * 8 6 5 10 10 N 1.47020 * 107.39983 * 22.11770 * 9 8 6 11 11 S 1.65607 * 125.64915 * 181.10210 * 10 9 8 12 12 O 1.42095 * 104.27758 * 206.09623 * 11 10 9 13 13 O 1.42104 * 104.27244 * 333.95537 * 11 10 9 14 14 C 1.81398 * 104.44868 * 90.02229 * 11 10 9 15 15 C 1.53001 * 109.47395 * 180.02562 * 14 11 10 16 16 C 1.52992 * 109.47484 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47338 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99723 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00282 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99645 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00060 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47191 * 90.00403 * 21 19 17 23 23 H 1.48508 * 109.47235 * 210.00127 * 21 19 17 24 24 H 1.48502 * 109.47315 * 330.00086 * 21 19 17 25 25 C 1.47743 * 108.53125 * 1.18235 * 10 9 8 26 26 C 1.39872 * 107.92011 * 359.60477 * 4 3 2 27 27 N 1.30843 * 108.20129 * 0.24286 * 26 4 3 28 28 H 1.08998 * 109.47420 * 270.26711 * 1 2 3 29 29 H 1.09005 * 109.47132 * 30.26299 * 1 2 3 30 30 H 1.09002 * 109.47016 * 150.26268 * 1 2 3 31 31 H 1.08003 * 126.12757 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47423 * 149.71310 * 5 4 3 33 33 H 1.08996 * 109.47402 * 29.70530 * 5 4 3 34 34 H 1.09004 * 110.72010 * 88.06167 * 8 6 5 35 35 H 1.08995 * 110.87585 * 324.86016 * 8 6 5 36 36 H 1.09002 * 109.88322 * 141.61300 * 9 8 6 37 37 H 1.09000 * 109.88025 * 262.62465 * 9 8 6 38 38 H 1.08999 * 109.47318 * 300.00373 * 14 11 10 39 39 H 1.09000 * 109.47370 * 60.00371 * 14 11 10 40 40 H 1.08999 * 109.47130 * 300.00412 * 15 14 11 41 41 H 1.09000 * 109.46622 * 59.99836 * 15 14 11 42 42 H 1.08999 * 109.47212 * 300.00286 * 16 15 14 43 43 H 1.09000 * 109.47387 * 60.00229 * 16 15 14 44 44 H 0.97004 * 120.00076 * 179.97438 * 20 19 17 45 45 H 1.09003 * 110.29227 * 216.94505 * 25 10 9 46 46 H 1.08996 * 110.53057 * 94.67717 * 25 10 9 47 47 H 1.07997 * 125.90138 * 180.27116 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7680 1.5452 -0.0072 6 6 5.1825 1.8358 -1.4511 7 1 4.3679 2.3049 -2.0029 8 6 5.6643 0.5436 -2.1622 9 6 6.6278 1.0815 -3.2410 10 7 7.0768 2.4121 -2.8056 11 16 8.1031 3.4062 -3.6427 12 8 8.7089 4.2095 -2.6393 13 8 8.8779 2.5198 -4.4385 14 6 7.0103 4.4089 -4.6872 15 6 7.8501 5.3792 -5.5203 16 6 6.9284 6.2253 -6.4008 17 6 7.7556 7.1805 -7.2218 18 1 8.8313 7.1835 -7.1256 19 6 7.1393 8.0500 -8.0967 20 7 5.8295 8.0460 -8.2141 21 14 8.1648 9.2335 -9.1149 22 1 8.5307 8.5901 -10.4023 23 1 7.3794 10.4651 -9.3827 24 1 9.3997 9.5863 -8.3693 25 6 6.4602 2.7106 -1.4966 26 6 3.5347 -0.7322 0.0037 27 7 2.2891 -1.1328 0.0058 28 1 -0.3634 0.0048 1.0276 29 1 -0.3634 0.8877 -0.5179 30 1 -0.3633 -0.8924 -0.5098 31 1 1.9282 2.1193 -0.0004 32 1 5.5820 1.0364 0.5091 33 1 4.5441 2.4825 0.5021 34 1 4.8254 0.0201 -2.6207 35 1 6.1906 -0.1095 -1.4661 36 1 7.4845 0.4147 -3.3386 37 1 6.1084 1.1597 -4.1961 38 1 6.4436 3.7566 -5.3515 39 1 6.3219 4.9723 -4.0572 40 1 8.4171 6.0315 -4.8563 41 1 8.5381 4.8154 -6.1503 42 1 6.3610 5.5732 -7.0648 43 1 6.2406 6.7890 -5.7704 44 1 5.3958 8.6579 -8.8293 45 1 6.1990 3.7670 -1.4339 46 1 7.1352 2.4387 -0.6852 47 1 4.4053 -1.3711 0.0073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080784872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:49 Heat of formation + Delta-G solvation = -8.817618 kcal Electronic energy + Delta-G solvation = -27063.801689 eV Core-core repulsion = 23181.950935 eV Total energy + Delta-G solvation = -3881.850754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.53707 -38.79280 -36.86998 -35.71122 -34.65744 -34.36439 -32.78592 -32.17857 -30.32604 -29.43392 -27.80134 -27.57695 -25.21404 -23.73143 -22.44919 -21.48946 -21.01979 -20.51415 -20.10658 -18.76147 -17.51741 -17.26101 -16.68489 -16.21542 -15.81783 -15.74093 -15.33554 -14.75671 -14.50790 -14.33031 -14.23980 -14.14561 -13.72397 -13.41087 -13.28268 -13.08462 -12.90734 -12.69834 -12.58311 -12.27804 -12.01781 -11.90018 -11.84051 -11.75137 -11.51857 -11.31737 -11.22236 -11.19296 -10.92172 -10.84482 -10.82800 -10.65076 -10.41440 -9.94546 -9.74570 -9.49582 -9.21525 -8.86213 -8.65217 -8.40939 -6.05942 -4.08854 0.45181 1.56691 2.19430 2.47702 2.81462 3.30373 3.36366 3.40646 4.04702 4.07584 4.19793 4.34560 4.42561 4.48950 4.60782 4.66937 4.71463 4.78789 4.96879 4.98008 5.12841 5.15046 5.19534 5.22071 5.26744 5.30660 5.37978 5.47679 5.54390 5.61768 5.65454 5.76796 5.79451 5.90091 5.94424 6.05795 6.16350 6.23720 6.33625 6.39009 6.46346 6.66873 6.88008 7.37551 7.56995 7.67009 7.92253 8.32891 8.97423 9.55770 11.05316 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.002163 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.847538 B =12943.550221 C =14278.929638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.056 3.944 4 C -0.230 4.230 5 C -0.031 4.031 6 C -0.095 4.095 7 H 0.085 0.915 8 C -0.118 4.118 9 C 0.119 3.881 10 N -1.018 6.018 11 S 2.615 3.385 12 O -0.958 6.958 13 O -0.958 6.958 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.126 3.874 26 C 0.054 3.946 27 N -0.301 5.301 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.261 0.739 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 -17.411 19.482 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.090 4.090 4 C -0.242 4.242 5 C -0.070 4.070 6 C -0.115 4.115 7 H 0.103 0.897 8 C -0.157 4.157 9 C -0.007 4.007 10 N -0.855 5.855 11 S 2.713 3.287 12 O -0.949 6.949 13 O -0.949 6.949 14 C -0.740 4.740 15 C -0.145 4.145 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C 0.000 4.000 26 C -0.132 4.132 27 N -0.122 5.122 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.190 0.810 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.150 -18.301 19.446 28.567 hybrid contribution 0.124 1.586 -0.937 1.846 sum -10.026 -16.715 18.509 26.880 Atomic orbital electron populations 1.21853 0.74270 1.04577 1.03295 1.48451 1.06623 1.03902 1.57097 1.22377 0.90948 0.93391 1.02312 1.20018 0.94337 0.93934 1.15908 1.19815 0.93870 0.98105 0.95174 1.22441 0.96919 0.95845 0.96309 0.89654 1.22650 0.98468 0.97216 0.97399 1.21689 0.97903 0.83315 0.97745 1.58864 1.66588 1.28921 1.31114 1.04996 0.74901 0.74198 0.74646 1.93560 1.73664 1.70494 1.57134 1.93559 1.66587 1.63428 1.71318 1.30592 1.15550 1.13592 1.14309 1.21499 0.98462 0.96437 0.98141 1.19057 0.94159 0.93858 0.93667 1.21261 0.93533 1.18963 1.22634 0.92352 1.25026 0.94973 0.97402 0.97033 1.69959 1.08259 1.38054 1.37215 0.86547 0.80246 0.80415 0.80550 1.20567 1.21178 1.19728 1.22065 0.93489 0.99648 0.84761 1.23800 0.95073 0.94625 0.99698 1.77367 1.01823 1.08382 1.24621 0.90840 0.89410 0.89333 0.81015 0.90670 0.90886 0.90402 0.90579 0.91163 0.91796 0.85569 0.85555 0.91598 0.91612 0.96168 0.96144 0.92915 0.90661 0.91103 0.80231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.47 59.85 0.69 1.10 16 2 N -0.38 -2.95 4.01 -68.16 -0.27 -3.23 16 3 C 0.06 0.38 11.40 -17.22 -0.20 0.19 16 4 C -0.23 -1.66 5.00 -105.05 -0.53 -2.19 16 5 C -0.03 -0.18 5.22 -27.88 -0.15 -0.33 16 6 C -0.09 -0.69 3.06 -88.47 -0.27 -0.96 16 7 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 8 C -0.12 -0.88 5.72 -24.90 -0.14 -1.02 16 9 C 0.12 1.18 6.89 -3.06 -0.02 1.16 16 10 N -1.02 -11.91 3.63 -111.18 -0.40 -12.32 16 11 S 2.61 40.03 5.65 -107.50 -0.61 39.42 16 12 O -0.96 -17.14 17.62 -57.54 -1.01 -18.15 16 13 O -0.96 -17.38 17.60 -57.54 -1.01 -18.39 16 14 C -0.61 -9.60 6.18 37.16 0.23 -9.37 16 15 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 16 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 17 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.13 1.17 6.39 -2.35 -0.02 1.16 16 26 C 0.05 0.44 11.65 -17.36 -0.20 0.24 16 27 N -0.30 -2.97 12.58 30.63 0.39 -2.59 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.49 8.02 -51.93 -0.42 0.07 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.13 1.81 8.14 -51.92 -0.42 1.38 16 39 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.62 8.03 -51.93 -0.42 0.21 16 47 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -37.55 401.36 -10.44 -47.99 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.98 Total: -4.13 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -1.29 Total: -25.37 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.44 Total: -44.06 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -2.03 Total: -36.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 40.03 SS G_CDS: -0.61 Total: 39.42 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.55 -10.44 -47.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080784872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.173 kcal (2) G-P(sol) polarization free energy of solvation -37.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds