Wall clock time and date at job start Tue Mar 31 2020 04:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34946 * 126.04185 * 2 1 4 4 C 1.35320 * 107.74817 * 180.14790 * 3 2 1 5 5 C 1.50696 * 126.03741 * 179.87743 * 4 3 2 6 6 C 1.53006 * 109.47105 * 269.71143 * 5 4 3 7 7 H 1.09005 * 110.88639 * 302.58074 * 6 5 4 8 8 C 1.55163 * 111.00151 * 66.45412 * 6 5 4 9 9 C 1.54321 * 102.93656 * 153.57526 * 8 6 5 10 10 N 1.47018 * 107.27482 * 337.80943 * 9 8 6 11 11 S 1.65604 * 125.64490 * 178.91944 * 10 9 8 12 12 O 1.42100 * 104.27261 * 206.09444 * 11 10 9 13 13 O 1.42095 * 104.27910 * 333.95395 * 11 10 9 14 14 C 1.81404 * 104.45097 * 90.02589 * 11 10 9 15 15 C 1.52995 * 109.47133 * 179.97438 * 14 11 10 16 16 C 1.53000 * 109.46924 * 180.02562 * 15 14 11 17 17 C 1.50701 * 109.47246 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00112 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00090 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99835 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47085 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47015 * 120.00158 * 21 19 17 24 24 H 1.48503 * 109.46933 * 239.99803 * 21 19 17 25 25 C 1.47419 * 108.70385 * 358.93758 * 10 9 8 26 26 C 1.39875 * 107.91765 * 359.61250 * 4 3 2 27 27 N 1.30839 * 108.20169 * 0.24293 * 26 4 3 28 28 H 1.08998 * 109.47335 * 270.25939 * 1 2 3 29 29 H 1.08998 * 109.46790 * 30.25696 * 1 2 3 30 30 H 1.09004 * 109.47128 * 150.25686 * 1 2 3 31 31 H 1.08004 * 126.12522 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47048 * 149.71918 * 5 4 3 33 33 H 1.08994 * 109.47643 * 29.71375 * 5 4 3 34 34 H 1.08998 * 110.72136 * 271.94040 * 8 6 5 35 35 H 1.08998 * 110.71711 * 35.03728 * 8 6 5 36 36 H 1.09006 * 109.87923 * 97.22996 * 9 8 6 37 37 H 1.09006 * 109.88287 * 218.23377 * 9 8 6 38 38 H 1.08999 * 109.46779 * 300.00258 * 14 11 10 39 39 H 1.08999 * 109.46737 * 59.99761 * 14 11 10 40 40 H 1.09000 * 109.47277 * 299.99601 * 15 14 11 41 41 H 1.08997 * 109.47545 * 59.99872 * 15 14 11 42 42 H 1.08999 * 109.47320 * 299.99799 * 16 15 14 43 43 H 1.09003 * 109.47295 * 60.00281 * 16 15 14 44 44 H 0.97008 * 119.99769 * 180.02562 * 20 19 17 45 45 H 1.08995 * 110.37192 * 265.29094 * 25 10 9 46 46 H 1.09005 * 110.36729 * 142.96280 * 25 10 9 47 47 H 1.08000 * 125.89358 * 180.22320 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6664 -0.0033 5 6 4.7680 1.5451 -0.0072 6 6 5.1826 1.8359 -1.4510 7 1 5.3683 0.9102 -1.9959 8 6 4.1158 2.7013 -2.1724 9 6 4.9387 3.4353 -3.2520 10 7 6.3398 3.4376 -2.8065 11 16 7.6160 4.0866 -3.6387 12 8 8.7419 3.3476 -3.1855 13 8 7.2079 4.0392 -4.9990 14 6 7.7070 5.8037 -3.0609 15 6 8.8623 6.5181 -3.7649 16 6 8.9394 7.9662 -3.2771 17 6 10.0777 8.6699 -3.9701 18 1 10.6856 8.1373 -4.6865 19 6 10.3430 9.9934 -3.6895 20 7 9.6031 10.6417 -2.8168 21 14 11.7536 10.8657 -4.5491 22 1 12.4270 9.9222 -5.4772 23 1 11.2263 12.0232 -5.3155 24 1 12.7292 11.3450 -3.5373 25 6 6.4205 2.7661 -1.4966 26 6 3.5346 -0.7323 0.0036 27 7 2.2891 -1.1328 0.0055 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5099 31 1 1.9282 2.1193 0.0004 32 1 5.5821 1.0363 0.5090 33 1 4.5443 2.4823 0.5023 34 1 3.3535 2.0712 -2.6305 35 1 3.6627 3.4110 -1.4802 36 1 4.8531 2.9107 -4.2037 37 1 4.5798 4.4589 -3.3596 38 1 6.7710 6.3137 -3.2887 39 1 7.8748 5.8162 -1.9840 40 1 9.7981 6.0080 -3.5367 41 1 8.6949 6.5056 -4.8419 42 1 8.0037 8.4767 -3.5050 43 1 9.1070 7.9784 -2.2001 44 1 9.7896 11.5731 -2.6197 45 1 6.3742 3.4989 -0.6911 46 1 7.3374 2.1809 -1.4261 47 1 4.4054 -1.3712 0.0064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080784874.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:54 Heat of formation + Delta-G solvation = -8.960802 kcal Electronic energy + Delta-G solvation = -26975.459979 eV Core-core repulsion = 23093.603016 eV Total energy + Delta-G solvation = -3881.856963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55805 -38.82309 -36.88019 -35.71813 -34.65802 -34.38176 -32.84799 -32.17936 -30.18898 -29.58631 -27.80877 -27.60709 -25.20504 -23.72328 -22.47599 -21.50499 -21.00715 -20.54254 -20.16514 -18.78704 -17.58583 -17.13662 -16.64337 -16.29712 -15.85377 -15.70109 -15.45129 -14.83504 -14.51166 -14.41507 -14.26972 -13.91119 -13.69863 -13.56323 -13.28179 -13.11272 -12.91241 -12.64428 -12.58211 -12.26724 -12.14153 -11.93002 -11.86260 -11.75536 -11.59343 -11.35196 -11.21813 -11.01361 -10.93536 -10.88441 -10.83060 -10.70589 -10.40391 -9.95016 -9.76485 -9.49156 -9.19918 -8.87935 -8.66215 -8.41261 -6.05935 -4.08839 0.44412 1.54519 2.17181 2.46319 2.80566 3.29359 3.36855 3.42026 4.04040 4.08663 4.15879 4.31477 4.42676 4.45320 4.58660 4.65933 4.68177 4.78496 4.94557 5.02983 5.04542 5.15301 5.18099 5.18989 5.26517 5.30843 5.40411 5.46774 5.51492 5.59569 5.62990 5.72930 5.77415 5.89925 5.94549 6.04707 6.13505 6.23837 6.32696 6.39006 6.46093 6.64790 6.87885 7.35615 7.57213 7.67007 7.92347 8.32934 8.97669 9.55954 11.05309 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.001897 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.013670 B =14755.003975 C =15160.533972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.057 3.943 4 C -0.230 4.230 5 C -0.031 4.031 6 C -0.091 4.091 7 H 0.085 0.915 8 C -0.120 4.120 9 C 0.119 3.881 10 N -1.017 6.017 11 S 2.614 3.386 12 O -0.958 6.958 13 O -0.959 6.959 14 C -0.608 4.608 15 C -0.106 4.106 16 C 0.030 3.970 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.117 3.883 26 C 0.052 3.948 27 N -0.301 5.301 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.172 0.828 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.481 -20.577 8.201 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.089 4.089 4 C -0.241 4.241 5 C -0.070 4.070 6 C -0.111 4.111 7 H 0.104 0.896 8 C -0.158 4.158 9 C -0.006 4.006 10 N -0.854 5.854 11 S 2.713 3.287 12 O -0.949 6.949 13 O -0.949 6.949 14 C -0.740 4.740 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.008 4.008 26 C -0.134 4.134 27 N -0.122 5.122 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.189 0.811 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -19.880 -21.873 7.592 30.517 hybrid contribution 0.852 1.932 0.019 2.112 sum -19.028 -19.940 7.611 28.594 Atomic orbital electron populations 1.21848 0.74306 1.04519 1.03320 1.48457 1.06602 1.03919 1.57130 1.22350 0.90903 0.93283 1.02363 1.20027 0.94413 0.93872 1.15813 1.19828 0.93855 0.98180 0.95166 1.22382 0.94143 0.98392 0.96225 0.89646 1.22659 0.97433 0.98408 0.97343 1.21675 0.80206 1.00663 0.98067 1.58757 1.21078 1.72788 1.32789 1.04984 0.72354 0.77508 0.73904 1.93555 1.49755 1.69285 1.82269 1.93556 1.81706 1.87209 1.32456 1.30589 1.09428 1.21908 1.12071 1.21502 0.93271 1.00745 0.99041 1.19067 0.97476 0.87476 0.96770 1.21301 1.14730 0.96084 1.24249 0.92295 1.25023 0.96639 0.97556 0.95212 1.69970 1.39322 1.10440 1.33715 0.86496 0.82187 0.79599 0.79518 1.19590 1.20951 1.20943 1.22098 0.99439 0.95010 0.84242 1.23838 0.95141 0.94716 0.99671 1.77367 1.01828 1.08360 1.24656 0.90830 0.89439 0.89354 0.81104 0.90538 0.90893 0.90613 0.90680 0.91231 0.91694 0.85572 0.85492 0.91580 0.91620 0.96144 0.96113 0.92969 0.91388 0.89755 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.37 11.47 59.85 0.69 1.06 16 2 N -0.38 -2.83 4.01 -68.16 -0.27 -3.10 16 3 C 0.06 0.37 11.05 -17.22 -0.19 0.18 16 4 C -0.23 -1.64 5.02 -105.05 -0.53 -2.16 16 5 C -0.03 -0.19 5.22 -27.88 -0.15 -0.33 16 6 C -0.09 -0.67 3.06 -88.47 -0.27 -0.95 16 7 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 8 C -0.12 -0.84 5.70 -24.89 -0.14 -0.98 16 9 C 0.12 1.15 6.89 -3.07 -0.02 1.13 16 10 N -1.02 -11.80 3.62 -111.43 -0.40 -12.20 16 11 S 2.61 39.85 5.65 -107.50 -0.61 39.24 16 12 O -0.96 -17.09 17.28 -57.54 -0.99 -18.08 16 13 O -0.96 -17.33 17.60 -57.54 -1.01 -18.34 16 14 C -0.61 -9.53 6.18 37.16 0.23 -9.30 16 15 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 16 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 17 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C 0.12 1.09 6.54 -2.53 -0.02 1.08 16 26 C 0.05 0.43 11.96 -17.36 -0.21 0.23 16 27 N -0.30 -2.95 12.58 30.63 0.39 -2.57 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.43 8.01 -51.93 -0.42 0.01 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 39 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 46 H 0.08 0.83 7.67 -51.93 -0.40 0.44 16 47 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 400.65 15.07 6.04 6.04 Total: -1.00 -37.59 400.65 -10.40 -48.00 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -7.96 Total: -4.34 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -1.29 Total: -25.40 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.44 Total: -43.73 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -2.01 Total: -36.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 39.85 SS G_CDS: -0.61 Total: 39.24 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.59 -10.40 -48.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080784874.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.036 kcal (2) G-P(sol) polarization free energy of solvation -37.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds