Wall clock time and date at job start Tue Mar 31 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37100 * 120.00396 * 2 1 4 4 H 1.07999 * 120.00207 * 169.03594 * 3 2 1 5 5 C 1.38950 * 119.99809 * 349.03939 * 3 2 1 6 6 N 1.31416 * 119.99745 * 8.65750 * 5 3 2 7 7 Si 1.86795 * 120.00313 * 188.66326 * 5 3 2 8 8 H 1.48508 * 109.46718 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47460 * 119.99668 * 7 5 3 10 10 H 1.48502 * 109.47321 * 240.00088 * 7 5 3 11 11 C 1.34776 * 119.99723 * 179.97438 * 2 1 3 12 12 O 1.21286 * 120.00321 * 354.21862 * 11 2 1 13 13 C 1.50711 * 119.99693 * 174.49150 * 11 2 1 14 14 H 1.08995 * 109.47137 * 317.98455 * 13 11 2 15 15 C 1.52999 * 109.46843 * 77.98369 * 13 11 2 16 16 C 1.50700 * 109.46916 * 186.19175 * 15 13 11 17 17 C 1.38232 * 120.00412 * 269.72724 * 16 15 13 18 18 C 1.38229 * 120.00411 * 179.76854 * 17 16 15 19 19 C 1.38241 * 119.99862 * 0.50354 * 18 17 16 20 20 C 1.38232 * 119.99850 * 359.74745 * 19 18 17 21 21 C 1.38233 * 120.00070 * 0.02562 * 20 19 18 22 22 N 1.46494 * 109.46831 * 197.98136 * 13 11 2 23 23 C 1.34774 * 120.00121 * 155.00081 * 22 13 11 24 24 O 1.21694 * 119.99698 * 0.02562 * 23 22 13 25 25 C 1.46652 * 120.00454 * 179.97438 * 23 22 13 26 26 C 1.36547 * 125.98915 * 179.97438 * 25 23 22 27 27 C 1.40365 * 106.70788 * 179.97438 * 26 25 23 28 28 C 1.35131 * 107.11415 * 0.02562 * 27 26 25 29 29 O 1.33929 * 108.77111 * 359.77012 * 28 27 26 30 30 H 1.08999 * 109.47170 * 185.08858 * 1 2 3 31 31 H 1.08999 * 109.47273 * 305.09613 * 1 2 3 32 32 H 1.09002 * 109.47017 * 65.09223 * 1 2 3 33 33 H 0.97006 * 119.99652 * 180.02562 * 6 5 3 34 34 H 1.09006 * 109.46936 * 306.18697 * 15 13 11 35 35 H 1.08997 * 109.47666 * 66.19322 * 15 13 11 36 36 H 1.08007 * 119.99289 * 359.97438 * 17 16 15 37 37 H 1.07999 * 120.00508 * 180.22837 * 18 17 16 38 38 H 1.07999 * 119.99852 * 179.72897 * 19 18 17 39 39 H 1.08000 * 120.00274 * 179.97438 * 20 19 18 40 40 H 1.08004 * 120.00152 * 179.97438 * 21 20 19 41 41 H 0.97008 * 120.00305 * 334.99658 * 22 13 11 42 42 H 1.07996 * 126.64827 * 0.02562 * 26 25 23 43 43 H 1.07999 * 126.44362 * 179.97438 * 27 26 25 44 44 H 1.08000 * 125.61441 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.2158 1.1958 0.1779 5 6 1.4749 2.3797 -0.2288 6 7 0.1616 2.3921 -0.2758 7 14 2.4331 3.9649 -0.4698 8 1 3.8880 3.6837 -0.3711 9 1 2.1273 4.5295 -1.8088 10 1 2.0460 4.9418 0.5795 11 6 2.1388 -1.1672 0.0005 12 8 1.5370 -2.2149 0.1068 13 6 3.6407 -1.1703 -0.1248 14 1 3.9441 -0.4418 -0.8766 15 6 4.2656 -0.8030 1.2226 16 6 5.7568 -0.6572 1.0617 17 6 6.5821 -1.7509 1.2448 18 6 7.9495 -1.6182 1.0925 19 6 8.4927 -0.3894 0.7672 20 6 7.6680 0.7056 0.5891 21 6 6.3001 0.5718 0.7369 22 7 4.0944 -2.5041 -0.5261 23 6 5.2661 -2.6501 -1.1759 24 8 5.9474 -1.6740 -1.4288 25 6 5.7207 -3.9854 -1.5773 26 6 6.8806 -4.2733 -2.2378 27 6 6.9093 -5.6654 -2.4149 28 6 5.7797 -6.1600 -1.8622 29 8 5.0683 -5.1452 -1.3543 30 1 -0.3633 -1.0236 0.0911 31 1 -0.3634 0.5908 0.8408 32 1 -0.3633 0.4328 -0.9321 33 1 -0.3101 3.2245 -0.4359 34 1 3.8442 0.1390 1.5738 35 1 4.0536 -1.5887 1.9478 36 1 6.1580 -2.7099 1.5037 37 1 8.5940 -2.4736 1.2319 38 1 9.5615 -0.2847 0.6524 39 1 8.0923 1.6657 0.3354 40 1 5.6557 1.4274 0.5982 41 1 3.5516 -3.2823 -0.3242 42 1 7.6309 -3.5669 -2.5607 43 1 7.6874 -6.2343 -2.9021 44 1 5.4989 -7.2024 -1.8310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:33 Heat of formation + Delta-G solvation = -6.896887 kcal Electronic energy + Delta-G solvation = -30612.638271 eV Core-core repulsion = 26497.708193 eV Total energy + Delta-G solvation = -4114.930078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.64783 -40.01740 -38.42519 -38.21841 -35.17110 -34.55149 -33.09721 -32.24606 -31.50923 -30.48129 -30.03129 -28.58499 -26.34239 -24.99723 -23.98075 -22.40216 -22.16605 -21.71283 -20.60999 -19.99425 -19.32678 -18.62542 -17.31843 -16.51842 -16.37307 -16.28088 -15.65276 -15.33681 -15.02709 -14.65695 -14.49868 -14.26106 -14.21394 -13.85479 -13.52292 -13.09848 -13.00175 -12.97610 -12.87450 -12.68650 -12.54190 -12.24515 -11.99322 -11.63425 -11.48138 -11.16979 -10.98804 -10.89439 -10.64469 -10.57345 -10.41319 -10.28955 -10.08720 -9.92765 -9.19685 -9.01747 -8.66696 -8.58944 -8.46504 -8.05932 -7.98946 -6.43484 -4.03343 1.15683 1.79027 1.84121 2.34518 2.75258 3.02471 3.15061 3.17952 3.40849 3.46909 3.72086 3.97730 4.23118 4.67691 4.74685 4.86911 4.96536 5.05896 5.21399 5.25071 5.35064 5.46890 5.61940 5.68699 5.72756 5.78236 5.86340 5.89305 5.97671 5.99968 6.20206 6.28728 6.35256 6.46236 6.53079 6.68360 6.79216 6.84806 6.88217 6.89627 7.10309 7.16685 7.29196 7.37816 7.44903 7.61457 7.86267 8.24003 8.44469 8.91536 9.34989 9.73433 10.49973 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004455 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.396680 B = 6282.917714 C = 7971.682462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.430 5.430 3 C -0.340 4.340 4 H 0.106 0.894 5 C 0.041 3.959 6 N -0.866 5.866 7 Si 0.922 3.078 8 H -0.264 1.264 9 H -0.278 1.278 10 H -0.279 1.279 11 C 0.439 3.561 12 O -0.613 6.613 13 C 0.154 3.846 14 H 0.110 0.890 15 C -0.092 4.092 16 C -0.053 4.053 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.115 4.115 21 C -0.105 4.105 22 N -0.697 5.697 23 C 0.596 3.404 24 O -0.505 6.505 25 C -0.063 4.063 26 C -0.130 4.130 27 C -0.227 4.227 28 C -0.016 4.016 29 O -0.162 6.162 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.269 0.731 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.410 0.590 42 H 0.158 0.842 43 H 0.153 0.847 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 -9.458 -0.191 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.146 5.146 3 C -0.467 4.467 4 H 0.124 0.876 5 C -0.165 4.165 6 N -0.505 5.505 7 Si 0.748 3.252 8 H -0.188 1.188 9 H -0.203 1.203 10 H -0.205 1.205 11 C 0.226 3.774 12 O -0.502 6.502 13 C 0.047 3.953 14 H 0.128 0.872 15 C -0.131 4.131 16 C -0.053 4.053 17 C -0.129 4.129 18 C -0.134 4.134 19 C -0.146 4.146 20 C -0.133 4.133 21 C -0.123 4.123 22 N -0.349 5.349 23 C 0.381 3.619 24 O -0.381 6.381 25 C -0.115 4.115 26 C -0.150 4.150 27 C -0.246 4.246 28 C -0.086 4.086 29 O -0.057 6.057 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.247 0.753 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 12.204 -9.048 -0.179 15.193 hybrid contribution 0.320 0.423 -0.304 0.611 sum 12.524 -8.625 -0.483 15.214 Atomic orbital electron populations 1.21611 0.79325 0.97778 1.03484 1.43662 1.06436 1.04517 1.60021 1.19903 0.94198 0.83251 1.49343 0.87600 1.25355 0.95707 0.99867 0.95562 1.70229 1.06419 1.27762 1.46051 0.85931 0.79951 0.81036 0.78327 1.18807 1.20330 1.20472 1.19676 0.88236 0.84210 0.85257 1.90512 1.69525 1.31491 1.58624 1.20606 0.93014 0.84315 0.97414 0.87239 1.21045 0.91258 1.04025 0.96791 1.19693 0.94862 0.93402 0.97386 1.20855 0.93542 0.97652 1.00899 1.20882 0.94888 0.97020 1.00585 1.20917 0.98942 0.93289 1.01487 1.20988 0.93778 0.98281 1.00272 1.21012 0.95027 0.97193 0.99053 1.45719 1.21068 1.10700 1.57382 1.16483 0.81774 0.85090 0.78583 1.90928 1.55044 1.36703 1.55459 1.22358 0.95534 0.85555 1.08093 1.21904 0.97326 0.96021 0.99770 1.21816 1.00609 0.94672 1.07471 1.24354 0.92366 0.92825 0.99027 1.84120 1.44940 1.14700 1.61894 0.94499 0.91546 0.91514 0.92020 0.88089 0.90855 0.87452 0.87237 0.87127 0.86836 0.86156 0.75283 0.82461 0.82907 0.77656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.93 8.88 59.85 0.53 3.46 16 2 N -0.43 -10.54 3.03 -122.19 -0.37 -10.91 16 3 C -0.34 -8.18 8.55 -14.93 -0.13 -8.31 16 4 H 0.11 2.39 5.02 -52.49 -0.26 2.13 16 5 C 0.04 0.98 5.46 -17.47 -0.10 0.88 16 6 N -0.87 -21.64 9.53 55.50 0.53 -21.11 16 7 Si 0.92 18.84 29.56 -169.99 -5.03 13.82 16 8 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 9 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 C 0.44 10.21 6.91 -10.98 -0.08 10.14 16 12 O -0.61 -15.31 15.25 5.55 0.08 -15.23 16 13 C 0.15 3.08 1.80 -69.08 -0.12 2.95 16 14 H 0.11 2.37 6.75 -51.93 -0.35 2.02 16 15 C -0.09 -1.67 4.64 -27.88 -0.13 -1.80 16 16 C -0.05 -0.91 3.39 -104.62 -0.35 -1.26 16 17 C -0.11 -1.77 6.86 -39.59 -0.27 -2.04 16 18 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 19 C -0.13 -1.82 10.05 -39.58 -0.40 -2.21 16 20 C -0.12 -1.74 10.05 -39.59 -0.40 -2.14 16 21 C -0.10 -1.77 9.64 -39.58 -0.38 -2.15 16 22 N -0.70 -12.67 4.94 -56.25 -0.28 -12.94 16 23 C 0.60 10.44 5.84 -12.87 -0.08 10.37 16 24 O -0.50 -9.80 13.86 5.19 0.07 -9.72 16 25 C -0.06 -0.95 7.13 -36.80 -0.26 -1.21 16 26 C -0.13 -1.70 10.62 -39.39 -0.42 -2.11 16 27 C -0.23 -2.32 10.87 -39.89 -0.43 -2.75 16 28 C -0.02 -0.16 12.08 29.63 0.36 0.20 16 29 O -0.16 -2.20 10.40 4.98 0.05 -2.15 16 30 H 0.04 0.87 6.91 -51.93 -0.36 0.51 16 31 H 0.07 1.64 7.17 -51.93 -0.37 1.27 16 32 H 0.07 1.67 6.97 -51.93 -0.36 1.31 16 33 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 34 H 0.10 1.89 6.19 -51.93 -0.32 1.57 16 35 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 36 H 0.11 1.64 8.05 -52.48 -0.42 1.22 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 41 H 0.41 7.39 7.48 -40.82 -0.31 7.08 16 42 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -29.14 368.04 -7.71 -36.85 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -5.27 Total: 15.90 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.05 Total: -0.06 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.12 Total: -44.96 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: 0.21 Total: -27.10 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.14 -7.71 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.955 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds