Wall clock time and date at job start Tue Mar 31 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37095 * 120.00020 * 2 1 4 4 H 1.08000 * 120.00345 * 201.11323 * 3 2 1 5 5 C 1.38956 * 120.00029 * 21.11804 * 3 2 1 6 6 N 1.31409 * 119.99884 * 13.71421 * 5 3 2 7 7 Si 1.86794 * 120.00007 * 193.71290 * 5 3 2 8 8 H 1.48504 * 109.47235 * 85.01596 * 7 5 3 9 9 H 1.48499 * 109.47424 * 205.01760 * 7 5 3 10 10 H 1.48499 * 109.47289 * 325.01963 * 7 5 3 11 11 C 1.34780 * 120.00008 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99988 * 179.97438 * 11 2 1 13 13 C 1.50701 * 120.00070 * 0.02562 * 11 2 1 14 14 H 1.09008 * 109.46954 * 59.99654 * 13 11 2 15 15 C 1.52999 * 109.47103 * 299.99787 * 13 11 2 16 16 C 1.50698 * 109.46958 * 174.99838 * 15 13 11 17 17 C 1.38242 * 119.99871 * 269.72165 * 16 15 13 18 18 C 1.38236 * 119.99395 * 180.32805 * 17 16 15 19 19 C 1.38230 * 120.00499 * 359.94746 * 18 17 16 20 20 C 1.38238 * 119.99851 * 0.02840 * 19 18 17 21 21 C 1.38230 * 120.00037 * 0.02562 * 20 19 18 22 22 N 1.46496 * 109.47301 * 179.97438 * 13 11 2 23 23 C 1.34768 * 120.00211 * 204.99763 * 22 13 11 24 24 O 1.21698 * 120.00167 * 0.02562 * 23 22 13 25 25 C 1.46658 * 120.00003 * 180.02562 * 23 22 13 26 26 C 1.36549 * 125.98824 * 179.71564 * 25 23 22 27 27 C 1.40358 * 106.70969 * 179.90914 * 26 25 23 28 28 C 1.35136 * 107.11636 * 0.35742 * 27 26 25 29 29 O 1.33929 * 108.76437 * 359.77842 * 28 27 26 30 30 H 1.09004 * 109.47118 * 274.37824 * 1 2 3 31 31 H 1.09001 * 109.46722 * 34.37966 * 1 2 3 32 32 H 1.09001 * 109.47069 * 154.37866 * 1 2 3 33 33 H 0.97002 * 119.99658 * 180.02562 * 6 5 3 34 34 H 1.09007 * 109.47098 * 54.99992 * 15 13 11 35 35 H 1.09001 * 109.46815 * 294.99942 * 15 13 11 36 36 H 1.07995 * 120.00001 * 0.27656 * 17 16 15 37 37 H 1.08001 * 119.99306 * 179.97438 * 18 17 16 38 38 H 1.08005 * 120.00118 * 180.02562 * 19 18 17 39 39 H 1.07999 * 119.99806 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.00186 * 179.97438 * 21 20 19 41 41 H 0.97004 * 119.99842 * 25.00470 * 22 13 11 42 42 H 1.08004 * 126.64385 * 0.04375 * 26 25 23 43 43 H 1.07999 * 126.44588 * 180.15066 * 27 26 25 44 44 H 1.07989 * 125.62072 * 179.77835 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1761 1.2187 -0.3369 5 6 1.5257 2.3503 0.4336 6 7 0.3892 2.2802 1.0894 7 14 2.3014 4.0132 0.0841 8 1 1.8998 4.4721 -1.2699 9 1 1.8411 4.9968 1.0969 10 1 3.7802 3.8928 0.1475 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.7590 -2.5302 -0.8897 15 6 0.5054 -2.5531 1.2495 16 6 -0.3392 -3.7998 1.1890 17 6 -1.5891 -3.7599 0.5998 18 6 -2.3666 -4.9019 0.5504 19 6 -1.8938 -6.0838 1.0892 20 6 -0.6437 -6.1237 1.6780 21 6 0.1333 -4.9816 1.7284 22 7 2.3374 -3.5859 0.0005 23 6 1.9713 -4.7854 -0.4927 24 8 0.8500 -4.9436 -0.9385 25 6 2.9241 -5.9003 -0.4921 26 6 2.6827 -7.1624 -0.9540 27 6 3.8641 -7.8954 -0.7616 28 6 4.7611 -7.0615 -0.1906 29 8 4.1910 -5.8603 -0.0298 30 1 -0.3633 0.0785 1.0247 31 1 -0.3633 0.8482 -0.5803 32 1 -0.3633 -0.9266 -0.4444 33 1 -0.0472 3.0921 1.3918 34 1 -0.1422 -1.6774 1.2950 35 1 1.1368 -2.5847 2.1374 36 1 -1.9585 -2.8365 0.1788 37 1 -3.3432 -4.8706 0.0904 38 1 -2.5011 -6.9761 1.0503 39 1 -0.2745 -7.0470 2.0993 40 1 1.1098 -5.0126 2.1887 41 1 3.2312 -3.4598 0.3556 42 1 1.7618 -7.5256 -1.3859 43 1 4.0249 -8.9321 -1.0183 44 1 5.7711 -7.3208 0.0900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855785.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:37 Heat of formation + Delta-G solvation = -5.104070 kcal Electronic energy + Delta-G solvation = -30412.540993 eV Core-core repulsion = 26297.688657 eV Total energy + Delta-G solvation = -4114.852336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.68610 -40.14289 -38.46419 -38.28866 -35.11463 -34.62256 -33.14781 -32.40870 -31.55170 -30.56912 -30.06636 -28.51145 -26.30489 -25.16847 -24.05008 -22.63939 -22.25205 -21.76598 -20.68965 -20.12663 -19.42380 -18.39537 -17.01062 -16.58680 -16.45051 -16.32872 -15.86337 -15.44773 -15.10964 -14.76959 -14.70386 -14.33708 -14.17990 -13.89791 -13.57758 -13.18871 -13.06304 -13.03348 -12.84293 -12.81933 -12.69604 -12.22911 -12.08790 -11.70190 -11.33756 -11.27024 -11.19867 -10.94082 -10.70859 -10.53535 -10.41502 -10.34595 -10.12246 -10.00539 -9.12981 -9.08618 -8.70201 -8.62125 -8.55333 -8.08587 -7.82132 -6.41206 -3.97089 1.10999 1.70603 1.75117 2.30786 2.71071 3.11180 3.21055 3.24666 3.36843 3.39380 3.70279 4.07326 4.14563 4.68665 4.71134 4.83399 4.99310 5.01856 5.12552 5.16157 5.26097 5.36888 5.51483 5.58548 5.62024 5.65983 5.69584 5.77782 5.83129 5.86404 5.99457 6.21367 6.22365 6.25021 6.36945 6.43816 6.60833 6.76201 6.76728 6.80102 6.81772 6.99291 7.12333 7.35430 7.48525 7.77061 7.98480 8.33089 8.38000 9.05589 9.28856 9.80781 10.61769 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.003762 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.860853 B = 7440.742630 C = 9294.621887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.433 5.433 3 C -0.310 4.310 4 H 0.101 0.899 5 C 0.034 3.966 6 N -0.877 5.877 7 Si 0.928 3.072 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.437 3.563 12 O -0.586 6.586 13 C 0.146 3.854 14 H 0.102 0.898 15 C -0.104 4.104 16 C -0.053 4.053 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.115 4.115 21 C -0.112 4.112 22 N -0.693 5.693 23 C 0.598 3.402 24 O -0.508 6.508 25 C -0.064 4.064 26 C -0.128 4.128 27 C -0.227 4.227 28 C -0.014 4.014 29 O -0.161 6.161 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.269 0.731 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.412 0.588 42 H 0.158 0.842 43 H 0.154 0.846 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 -17.045 0.039 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.150 5.150 3 C -0.437 4.437 4 H 0.119 0.881 5 C -0.170 4.170 6 N -0.516 5.516 7 Si 0.754 3.246 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.224 3.776 12 O -0.471 6.471 13 C 0.038 3.962 14 H 0.120 0.880 15 C -0.143 4.143 16 C -0.053 4.053 17 C -0.124 4.124 18 C -0.133 4.133 19 C -0.146 4.146 20 C -0.133 4.133 21 C -0.130 4.130 22 N -0.345 5.345 23 C 0.383 3.617 24 O -0.385 6.385 25 C -0.117 4.117 26 C -0.149 4.149 27 C -0.246 4.246 28 C -0.084 4.084 29 O -0.056 6.056 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.249 0.751 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.355 -16.663 -0.061 16.718 hybrid contribution 0.674 0.591 -0.038 0.897 sum -0.680 -16.072 -0.099 16.087 Atomic orbital electron populations 1.21768 0.81050 0.98909 1.02289 1.43494 1.05574 1.04515 1.61448 1.19681 0.99026 0.83279 1.41756 0.88099 1.25336 0.96471 1.00095 0.95111 1.69989 1.17584 1.29423 1.34619 0.85913 0.79612 0.80916 0.78113 1.20223 1.20895 1.19368 1.19803 0.88018 0.84535 0.85292 1.90520 1.13574 1.86518 1.56517 1.20696 0.90152 0.85914 0.99482 0.88045 1.21319 0.98039 0.96983 0.97920 1.19683 0.94395 0.94620 0.96640 1.20935 0.94099 0.98342 0.99038 1.20981 0.99442 0.93085 0.99749 1.20933 0.96270 0.97585 0.99806 1.20910 0.94798 0.97604 0.99960 1.20886 0.99021 0.92809 1.00272 1.45620 1.17692 1.09311 1.61855 1.16471 0.85440 0.80956 0.78806 1.90913 1.18435 1.82193 1.46986 1.22294 0.84091 0.97505 1.07792 1.21900 0.99989 0.91770 1.01240 1.21820 0.93922 1.01747 1.07150 1.24373 0.99618 0.82369 1.01997 1.84124 1.24062 1.33682 1.63708 0.91317 0.91290 0.94939 0.92034 0.87655 0.90483 0.86367 0.86773 0.87049 0.87149 0.87360 0.75070 0.82460 0.82868 0.77606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.18 7.05 59.85 0.42 2.60 16 2 N -0.43 -10.55 3.02 -122.19 -0.37 -10.92 16 3 C -0.31 -8.30 9.31 -14.93 -0.14 -8.44 16 4 H 0.10 2.85 7.39 -52.49 -0.39 2.46 16 5 C 0.03 0.86 5.09 -17.47 -0.09 0.77 16 6 N -0.88 -22.29 10.64 55.50 0.59 -21.70 16 7 Si 0.93 20.12 29.57 -169.99 -5.03 15.09 16 8 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 C 0.44 10.17 7.10 -10.98 -0.08 10.09 16 12 O -0.59 -15.36 15.52 5.54 0.09 -15.28 16 13 C 0.15 2.75 1.85 -69.08 -0.13 2.62 16 14 H 0.10 1.95 6.85 -51.92 -0.36 1.59 16 15 C -0.10 -1.78 4.64 -27.88 -0.13 -1.91 16 16 C -0.05 -0.84 3.36 -104.62 -0.35 -1.20 16 17 C -0.11 -1.59 9.59 -39.58 -0.38 -1.97 16 18 C -0.11 -1.56 10.05 -39.59 -0.40 -1.96 16 19 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 20 C -0.11 -1.58 10.05 -39.58 -0.40 -1.97 16 21 C -0.11 -1.69 6.87 -39.59 -0.27 -1.96 16 22 N -0.69 -12.17 4.84 -56.25 -0.27 -12.45 16 23 C 0.60 10.03 5.79 -12.87 -0.07 9.95 16 24 O -0.51 -9.28 13.87 5.19 0.07 -9.21 16 25 C -0.06 -0.94 7.13 -36.79 -0.26 -1.21 16 26 C -0.13 -1.62 10.62 -39.39 -0.42 -2.04 16 27 C -0.23 -2.25 10.87 -39.89 -0.43 -2.68 16 28 C -0.01 -0.13 12.08 29.63 0.36 0.23 16 29 O -0.16 -2.15 10.40 5.00 0.05 -2.10 16 30 H 0.07 1.48 6.44 -51.93 -0.33 1.15 16 31 H 0.07 1.54 7.18 -51.93 -0.37 1.16 16 32 H 0.03 0.58 5.74 -51.93 -0.30 0.28 16 33 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.11 1.82 4.47 -51.92 -0.23 1.59 16 35 H 0.08 1.33 8.09 -51.93 -0.42 0.91 16 36 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.11 1.60 8.05 -52.49 -0.42 1.18 16 41 H 0.41 7.33 7.55 -40.82 -0.31 7.03 16 42 H 0.16 1.88 8.06 -52.48 -0.42 1.45 16 43 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -31.08 367.12 -7.73 -38.81 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -5.23 Total: 13.38 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -3.17 Total: -1.16 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.05 Total: -45.07 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: 0.21 Total: -26.59 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.08 -7.73 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855785.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.705 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds