Wall clock time and date at job start Tue Mar 31 2020 04:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46997 * 228.69543 * 3 2 1 5 5 C 1.34780 * 119.99922 * 270.00195 * 4 3 2 6 6 O 1.21286 * 120.00227 * 180.02562 * 5 4 3 7 7 C 1.50695 * 120.00133 * 359.97438 * 5 4 3 8 8 C 1.50701 * 109.47494 * 179.97438 * 7 5 4 9 9 C 1.38298 * 119.93087 * 269.73332 * 8 7 5 10 10 C 1.38110 * 120.06572 * 179.72416 * 9 8 7 11 11 C 1.38880 * 119.92604 * 0.56689 * 10 9 8 12 12 O 1.35752 * 120.06181 * 179.68662 * 11 10 9 13 13 C 1.34836 * 116.99713 * 174.48443 * 12 11 10 14 14 H 1.07994 * 119.99820 * 5.05575 * 13 12 11 15 15 C 1.38657 * 120.00236 * 185.05304 * 13 12 11 16 16 N 1.31562 * 119.99721 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47315 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46918 * 120.00070 * 17 15 13 20 20 H 1.48501 * 109.47089 * 240.00002 * 17 15 13 21 21 C 1.38877 * 119.86541 * 359.70089 * 11 10 9 22 22 C 1.38097 * 119.93167 * 0.02562 * 21 11 10 23 23 C 1.46501 * 120.00045 * 90.00348 * 4 3 2 24 24 C 1.53000 * 109.47087 * 59.99967 * 23 4 3 25 25 C 1.53005 * 109.46919 * 179.97438 * 24 23 4 26 26 C 1.53003 * 109.47039 * 59.99897 * 25 24 23 27 27 C 1.53001 * 109.46999 * 299.99978 * 26 25 24 28 28 C 1.52995 * 109.46832 * 299.99721 * 23 4 3 29 29 H 4.40639 * 5.51450 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47463 * 108.69879 * 3 2 1 31 31 H 1.08994 * 109.47714 * 348.69492 * 3 2 1 32 32 H 1.09000 * 109.47162 * 300.00246 * 7 5 4 33 33 H 1.09008 * 109.46819 * 60.00325 * 7 5 4 34 34 H 1.08001 * 119.96975 * 359.97399 * 9 8 7 35 35 H 1.07995 * 120.03422 * 180.27058 * 10 9 8 36 36 H 0.96991 * 119.99959 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.03255 * 179.97438 * 21 11 10 38 38 H 1.08002 * 119.96507 * 179.97438 * 22 21 11 39 39 H 1.09006 * 109.47114 * 180.02562 * 23 4 3 40 40 H 1.08995 * 109.46827 * 299.99979 * 24 23 4 41 41 H 1.09000 * 109.47094 * 59.99971 * 24 23 4 42 42 H 1.08996 * 109.47154 * 300.00176 * 25 24 23 43 43 H 1.08992 * 109.47053 * 179.97438 * 25 24 23 44 44 H 1.08994 * 109.46849 * 179.97438 * 26 25 24 45 45 H 1.09006 * 109.46861 * 60.00048 * 26 25 24 46 46 H 1.08996 * 109.47414 * 299.99856 * 27 26 25 47 47 H 1.09002 * 109.46562 * 179.97438 * 27 26 25 48 48 H 1.09001 * 109.47415 * 300.00199 * 28 23 4 49 49 H 1.08997 * 109.47414 * 60.00680 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9126 1.0376 5 6 3.3578 2.2089 0.7444 6 8 3.7622 2.9638 1.6033 7 6 3.1070 2.7202 -0.6508 8 6 3.4320 4.1904 -0.7131 9 6 2.4489 5.1262 -0.4476 10 6 2.7451 6.4743 -0.4984 11 6 4.0287 6.8897 -0.8280 12 8 4.3212 8.2141 -0.8849 13 6 5.6102 8.5476 -1.0978 14 1 6.3415 7.7779 -1.2955 15 6 5.9968 9.8787 -1.0630 16 7 5.1059 10.8163 -0.8217 17 14 7.7823 10.3408 -1.3586 18 1 8.5775 9.1112 -1.6061 19 1 7.8730 11.2348 -2.5410 20 1 8.3159 11.0439 -0.1644 21 6 5.0122 5.9475 -1.0995 22 6 4.7112 4.6009 -1.0415 23 6 3.3783 0.4154 2.3938 24 6 4.4334 -0.6916 2.3488 25 6 4.6892 -1.2103 3.7653 26 6 3.3886 -1.7687 4.3465 27 6 2.3335 -0.6616 4.3915 28 6 2.0776 -0.1430 2.9744 29 1 -1.0502 0.0000 -0.0003 30 1 3.0092 0.3303 -0.9734 31 1 3.0098 -1.0068 0.2014 32 1 3.7378 2.1780 -1.3553 33 1 2.0591 2.5688 -0.9102 34 1 1.4497 4.8026 -0.1963 35 1 1.9782 7.2045 -0.2867 36 1 5.3764 11.7474 -0.7970 37 1 6.0112 6.2675 -1.3565 38 1 5.4755 3.8678 -1.2530 39 1 3.7347 1.2323 3.0215 40 1 4.0766 -1.5082 1.7212 41 1 5.3601 -0.2937 1.9351 42 1 5.0461 -0.3935 4.3924 43 1 5.4405 -1.9993 3.7331 44 1 3.5709 -2.1386 5.3554 45 1 3.0316 -2.5856 3.7193 46 1 2.6905 0.1553 5.0186 47 1 1.4069 -1.0595 4.8051 48 1 1.3259 0.6457 3.0065 49 1 1.7208 -0.9597 2.3470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089261588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:49 Heat of formation + Delta-G solvation = 3.584527 kcal Electronic energy + Delta-G solvation = -29033.925415 eV Core-core repulsion = 25120.708851 eV Total energy + Delta-G solvation = -3913.216564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.178 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.50357 -38.99861 -38.13980 -36.43322 -35.78460 -32.94227 -32.43492 -31.52275 -31.05587 -30.10235 -29.82561 -27.34395 -26.49014 -25.07628 -22.92377 -22.72070 -21.91136 -20.76739 -20.06363 -19.62092 -18.19510 -17.92437 -17.14464 -16.92337 -16.55116 -15.62201 -15.24705 -14.62795 -14.57881 -14.50364 -14.37529 -14.31355 -13.82988 -13.72331 -13.52208 -13.46937 -13.23760 -13.04280 -12.88087 -12.64614 -12.50266 -12.41080 -11.82186 -11.59416 -11.49170 -11.47846 -11.23085 -11.08784 -10.83539 -10.70226 -10.65317 -10.58246 -10.56729 -10.52800 -10.42388 -10.37910 -9.60158 -9.26670 -8.90937 -8.77372 -8.08907 -7.10307 -6.39850 -3.98222 2.17397 2.31140 2.38968 2.54945 2.74225 3.14334 3.17093 3.22228 3.22951 4.01261 4.09129 4.34411 4.47694 4.53756 4.59659 4.76366 4.83047 4.93695 4.97474 5.01835 5.13632 5.19204 5.19718 5.20855 5.30432 5.33296 5.35936 5.40693 5.44795 5.64904 5.71359 5.72554 5.74190 5.77955 5.80937 5.83740 5.90925 5.92045 6.05107 6.12884 6.27468 6.42995 6.47859 6.76175 6.97337 7.11020 7.25921 7.30941 7.34308 7.43110 7.50681 7.89940 8.05783 8.27398 9.06078 9.77210 10.78512 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002252 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.648714 B =12430.898969 C =13222.369512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.207 4.207 3 C 0.217 3.783 4 N -0.615 5.615 5 C 0.515 3.485 6 O -0.514 6.514 7 C -0.080 4.080 8 C -0.169 4.169 9 C -0.059 4.059 10 C -0.191 4.191 11 C 0.157 3.843 12 O -0.179 6.179 13 C -0.390 4.390 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.864 5.864 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.232 4.232 22 C -0.056 4.056 23 C 0.139 3.861 24 C -0.127 4.127 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.124 4.124 29 H 0.216 0.784 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.269 0.731 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 -27.982 4.087 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.209 4.209 3 C 0.094 3.906 4 N -0.348 5.348 5 C 0.304 3.696 6 O -0.387 6.387 7 C -0.119 4.119 8 C -0.171 4.171 9 C -0.078 4.078 10 C -0.210 4.210 11 C 0.103 3.897 12 O -0.083 6.083 13 C -0.466 4.466 14 H 0.110 0.890 15 C -0.166 4.166 16 N -0.499 5.499 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.251 4.251 22 C -0.075 4.075 23 C 0.036 3.964 24 C -0.166 4.166 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.162 4.162 29 H 0.233 0.767 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.287 -27.056 4.595 27.948 hybrid contribution 0.578 0.108 -0.172 0.613 sum -4.709 -26.948 4.423 27.712 Atomic orbital electron populations 1.24970 0.95955 0.99652 0.99711 1.23586 0.94957 1.01260 1.01072 1.18386 0.83722 0.95696 0.92812 1.48139 1.66910 1.09238 1.10562 1.21116 0.76508 0.80617 0.91374 1.90738 1.43626 1.54878 1.49436 1.20467 1.03049 0.95192 0.93215 1.18638 0.94891 0.91996 1.11528 1.20391 0.97582 0.92045 0.97741 1.20150 0.95444 0.95353 1.10077 1.19375 0.93198 0.85047 0.92080 1.83979 1.29167 1.17234 1.77872 1.21375 0.82418 0.93066 1.49739 0.89047 1.25288 1.00038 0.94554 0.96731 1.70052 1.33757 1.00654 1.45438 0.85649 0.80536 0.78991 0.78254 1.19114 1.20192 1.20165 1.21100 1.00547 0.92717 1.10742 1.20496 0.94698 0.94973 0.97304 1.21101 0.94851 0.97198 0.83267 1.21892 0.99110 0.98015 0.97554 1.21495 0.97431 1.00702 0.95880 1.21557 0.95347 0.97985 1.00856 1.21522 0.98954 0.98540 0.96570 1.21880 0.97298 1.00742 0.96329 0.76716 0.87786 0.88134 0.89023 0.89046 0.87522 0.86577 0.92141 0.85586 0.87846 0.87924 0.91775 0.91351 0.91580 0.91684 0.91948 0.92065 0.91664 0.91830 0.91761 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.21 -1.80 11.88 -37.12 -0.44 -2.24 16 3 C 0.22 1.66 5.15 -6.83 -0.04 1.63 16 4 N -0.61 -6.61 2.37 -169.42 -0.40 -7.01 16 5 C 0.51 7.48 7.66 -10.99 -0.08 7.39 16 6 O -0.51 -9.92 15.36 5.55 0.09 -9.83 16 7 C -0.08 -1.06 4.38 -29.04 -0.13 -1.19 16 8 C -0.17 -3.05 4.38 -104.58 -0.46 -3.51 16 9 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 10 C -0.19 -4.29 9.99 -39.39 -0.39 -4.69 16 11 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 12 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 13 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 14 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 16 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 17 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.23 -5.30 9.17 -39.40 -0.36 -5.66 16 22 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 23 C 0.14 1.41 2.52 -67.93 -0.17 1.24 16 24 C -0.13 -1.01 5.18 -26.73 -0.14 -1.15 16 25 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 26 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 27 C -0.12 -0.89 5.92 -26.70 -0.16 -1.05 16 28 C -0.12 -1.10 4.63 -26.71 -0.12 -1.22 16 29 H 0.22 1.10 7.80 -54.08 -0.42 0.68 16 30 H 0.10 0.65 6.44 -51.93 -0.33 0.32 16 31 H 0.10 0.57 6.43 -51.93 -0.33 0.23 16 32 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 33 H 0.09 1.07 7.89 -51.92 -0.41 0.66 16 34 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.13 2.87 5.64 -52.48 -0.30 2.58 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.10 1.34 6.90 -51.93 -0.36 0.98 16 40 H 0.06 0.42 6.66 -51.93 -0.35 0.08 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.54 6.92 -51.93 -0.36 0.18 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -34.71 399.86 -8.92 -43.64 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.30 Total: 4.12 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -3.07 Total: -22.52 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.36 Total: -32.18 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.71 -8.92 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089261588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.221 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds