Wall clock time and date at job start Tue Mar 31 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40396 * 107.86945 * 179.88542 * 3 2 1 5 5 N 1.40196 * 125.97439 * 180.17767 * 4 3 2 6 6 C 1.34772 * 120.00000 * 0.27024 * 5 4 3 7 7 O 1.21595 * 120.00020 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00026 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47077 * 180.02562 * 9 8 6 11 11 C 1.38249 * 120.00198 * 260.00288 * 10 9 8 12 12 C 1.38217 * 120.00446 * 179.97438 * 11 10 9 13 13 C 1.38257 * 119.99243 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99491 * 179.97438 * 13 12 11 15 15 C 1.38212 * 120.00680 * 359.95702 * 13 12 11 16 16 C 1.38221 * 119.99755 * 79.72608 * 10 9 8 17 17 C 1.50702 * 120.00077 * 0.02562 * 16 10 9 18 18 N 1.31217 * 108.05370 * 0.38247 * 4 3 2 19 19 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 20 20 C 1.46496 * 125.97396 * 359.97438 * 19 2 1 21 21 C 1.50702 * 109.47079 * 90.00325 * 20 19 2 22 22 H 1.08002 * 120.00024 * 359.97438 * 21 20 19 23 23 C 1.37881 * 120.00327 * 179.97438 * 21 20 19 24 24 N 1.31513 * 119.99450 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00465 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46886 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47412 * 119.99720 * 25 23 21 28 28 H 1.48502 * 109.47173 * 239.99978 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 32 32 H 1.08001 * 126.06108 * 0.02728 * 3 2 1 33 33 H 0.97004 * 120.00062 * 180.27001 * 5 4 3 34 34 H 0.97004 * 119.99904 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.47274 * 299.99650 * 9 8 6 36 36 H 1.08998 * 109.47280 * 60.00233 * 9 8 6 37 37 H 1.08005 * 119.99919 * 0.02562 * 11 10 9 38 38 H 1.07993 * 120.00164 * 179.97438 * 12 11 10 39 39 H 1.08996 * 109.47745 * 90.00023 * 14 13 12 40 40 H 1.09010 * 109.46962 * 210.00397 * 14 13 12 41 41 H 1.09003 * 109.47017 * 329.99295 * 14 13 12 42 42 H 1.07997 * 120.00180 * 180.02562 * 15 13 12 43 43 H 1.08998 * 109.46949 * 89.99518 * 17 16 10 44 44 H 1.08995 * 109.46702 * 210.00100 * 17 16 10 45 45 H 1.09002 * 109.47009 * 329.99441 * 17 16 10 46 46 H 1.08997 * 109.47352 * 209.99655 * 20 19 2 47 47 H 1.09001 * 109.47699 * 330.00018 * 20 19 2 48 48 H 0.97001 * 120.00075 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6546 0.0027 5 7 4.7738 1.4751 0.0071 6 6 4.6371 2.8159 0.0146 7 8 3.5278 3.3139 0.0171 8 7 5.7298 3.6047 0.0183 9 6 5.5811 5.0621 0.0259 10 6 6.9437 5.7061 0.0281 11 6 7.4808 6.1833 1.2092 12 6 8.7307 6.7734 1.2114 13 6 9.4434 6.8869 0.0322 14 6 10.8060 7.5308 0.0344 15 6 8.9067 6.4095 -1.1486 16 6 7.6587 5.8144 -1.1498 17 6 7.0756 5.2891 -2.4363 18 7 3.6337 -0.6576 -0.0041 19 7 2.3017 -1.0909 -0.0060 20 6 1.8501 -2.4845 -0.0130 21 6 1.6948 -2.9550 -1.4363 22 1 1.9105 -2.2830 -2.2538 23 6 1.2773 -4.2434 -1.6948 24 7 1.0151 -5.0619 -0.6994 25 14 1.0841 -4.8264 -3.4590 26 1 1.4382 -3.7223 -4.3867 27 1 1.9836 -5.9832 -3.6994 28 1 -0.3237 -5.2369 -3.6933 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.9720 2.1211 0.0004 33 1 5.6588 1.0779 0.0047 34 1 6.6148 3.2074 0.0159 35 1 5.0328 5.3761 -0.8623 36 1 5.0334 5.3668 0.9177 37 1 6.9241 6.0942 2.1305 38 1 9.1500 7.1465 2.1340 39 1 11.5671 6.7702 0.2082 40 1 10.9835 8.0089 -0.9291 41 1 10.8528 8.2793 0.8254 42 1 9.4637 6.4978 -2.0696 43 1 6.5031 6.0777 -2.9244 44 1 7.8815 4.9644 -3.0945 45 1 6.4206 4.4450 -2.2204 46 1 2.5849 -3.1072 0.4972 47 1 0.8916 -2.5586 0.5008 48 1 0.7218 -5.9684 -0.8812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089613888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:03 Heat of formation + Delta-G solvation = 62.895952 kcal Electronic energy + Delta-G solvation = -28230.988424 eV Core-core repulsion = 24287.210636 eV Total energy + Delta-G solvation = -3943.777788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78429 -40.22143 -39.34988 -35.71623 -34.67872 -33.53361 -33.20876 -32.41201 -31.33533 -30.75132 -28.64340 -27.49648 -26.58338 -26.27853 -24.80730 -23.00357 -22.47838 -21.54407 -20.55189 -19.84587 -19.55321 -17.87708 -16.67921 -16.55050 -16.39428 -15.94559 -15.49546 -15.31513 -15.11283 -14.84762 -14.37818 -14.24438 -14.17281 -13.98646 -13.52362 -13.51359 -13.29753 -12.94289 -12.91786 -12.60181 -12.45950 -12.36554 -12.27884 -12.08022 -11.93803 -11.63587 -11.38319 -11.31161 -11.27228 -11.04688 -10.84417 -10.39537 -10.24407 -10.00378 -9.65046 -9.49787 -9.21415 -9.12171 -8.86830 -8.63351 -7.87458 -7.36689 -6.23849 -4.31323 0.83222 1.02734 2.46611 2.68454 3.13143 3.21139 3.29047 3.31542 3.35882 3.72778 3.87514 4.29327 4.30359 4.37403 4.40816 4.52219 4.57939 4.82444 4.95128 5.09639 5.12399 5.17000 5.25364 5.32343 5.34798 5.41454 5.45506 5.52712 5.55984 5.75385 5.76280 5.87683 5.98274 6.05838 6.13835 6.20939 6.23660 6.26622 6.30583 6.52819 6.61677 6.65143 6.67890 6.98693 7.07911 7.17282 7.56575 7.69483 7.91206 7.98363 8.10825 8.62512 8.71008 8.79081 9.34995 10.83257 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020737 B = 0.001849 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.892387 B =15136.470446 C =15690.763353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.566 6.566 8 N -0.740 5.740 9 C 0.183 3.817 10 C -0.116 4.116 11 C -0.090 4.090 12 C -0.131 4.131 13 C -0.076 4.076 14 C -0.116 4.116 15 C -0.125 4.125 16 C -0.059 4.059 17 C -0.125 4.125 18 N -0.324 5.324 19 N -0.319 5.319 20 C 0.258 3.742 21 C -0.535 4.535 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.406 0.594 34 H 0.397 0.603 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.389 24.333 2.186 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.294 5.294 6 C 0.412 3.588 7 O -0.441 6.441 8 N -0.397 5.397 9 C 0.060 3.940 10 C -0.116 4.116 11 C -0.108 4.108 12 C -0.149 4.149 13 C -0.076 4.076 14 C -0.173 4.173 15 C -0.143 4.143 16 C -0.059 4.059 17 C -0.181 4.181 18 N -0.155 5.155 19 N -0.101 5.101 20 C 0.141 3.859 21 C -0.573 4.573 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.178 0.822 33 H 0.240 0.760 34 H 0.231 0.769 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.140 0.860 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.969 23.448 2.229 27.907 hybrid contribution 0.490 -0.185 -0.878 1.022 sum 15.459 23.263 1.351 27.963 Atomic orbital electron populations 1.20371 0.87992 1.03812 1.02479 1.21056 0.94875 0.87151 1.00985 1.21239 0.89709 0.99819 1.21225 1.18660 0.86551 0.89240 1.02659 1.41391 1.07592 1.03718 1.76659 1.15623 0.84689 0.80387 0.78110 1.90878 1.23493 1.73469 1.56278 1.45093 1.07651 1.06016 1.80974 1.19974 0.92964 0.77800 1.03277 1.19748 0.96414 1.02147 0.93333 1.21102 0.95333 0.96966 0.97434 1.21017 0.95022 1.01101 0.97713 1.19973 0.96463 0.97830 0.93335 1.20821 0.93375 1.00271 1.02835 1.20926 0.95526 1.00077 0.97806 1.19849 0.94087 0.96929 0.95059 1.20929 1.01397 1.01698 0.94092 1.77245 0.99965 1.08345 1.29944 1.48952 1.00884 1.07707 1.52544 1.19674 0.95953 0.71435 0.98877 1.21381 1.46558 0.97934 0.91445 0.91688 1.24933 0.94737 0.96071 0.98100 1.69931 1.45087 1.06900 1.31057 0.86310 0.77851 0.78769 0.83815 1.19581 1.20694 1.20653 0.91137 0.89963 0.90645 0.82238 0.75967 0.76889 0.90438 0.90669 0.85651 0.85976 0.91019 0.91491 0.91467 0.85971 0.90776 0.91374 0.90643 0.93044 0.92812 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 2 C 0.09 1.95 6.93 -82.28 -0.57 1.38 16 3 C -0.29 -6.09 9.52 -39.84 -0.38 -6.47 16 4 C 0.28 5.86 8.11 -154.36 -1.25 4.61 16 5 N -0.64 -10.21 5.45 -15.51 -0.08 -10.29 16 6 C 0.71 10.62 8.53 -86.93 -0.74 9.88 16 7 O -0.57 -10.38 13.47 5.28 0.07 -10.31 16 8 N -0.74 -7.67 4.87 -66.41 -0.32 -7.99 16 9 C 0.18 1.74 4.93 -5.19 -0.03 1.71 16 10 C -0.12 -0.95 5.25 -104.62 -0.55 -1.50 16 11 C -0.09 -0.68 9.67 -39.58 -0.38 -1.07 16 12 C -0.13 -0.92 9.70 -39.58 -0.38 -1.30 16 13 C -0.08 -0.53 5.88 -104.62 -0.62 -1.14 16 14 C -0.12 -0.55 10.01 36.01 0.36 -0.19 16 15 C -0.13 -0.92 9.36 -39.58 -0.37 -1.29 16 16 C -0.06 -0.47 5.88 -104.62 -0.62 -1.08 16 17 C -0.12 -0.91 9.26 36.01 0.33 -0.57 16 18 N -0.32 -7.59 12.59 31.44 0.40 -7.20 16 19 N -0.32 -7.66 3.59 -58.33 -0.21 -7.87 16 20 C 0.26 6.69 5.81 -5.20 -0.03 6.66 16 21 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 22 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 25 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.16 3.31 5.91 -52.49 -0.31 3.00 16 33 H 0.41 5.18 8.84 -40.82 -0.36 4.82 16 34 H 0.40 3.25 8.48 -40.82 -0.35 2.90 16 35 H 0.08 0.78 7.29 -51.93 -0.38 0.40 16 36 H 0.08 0.74 8.01 -51.93 -0.42 0.32 16 37 H 0.13 0.82 8.04 -52.48 -0.42 0.40 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.27 8.09 -51.92 -0.42 -0.15 16 41 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 45 H 0.07 0.63 6.33 -51.93 -0.33 0.30 16 46 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 47 H 0.05 1.37 7.65 -51.93 -0.40 0.98 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 403.16 15.07 6.08 6.08 Total: -1.00 -33.17 403.16 -10.77 -43.94 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.12 Total: 6.90 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -5.29 Total: -5.04 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.51 Total: -57.76 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.17 -10.77 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089613888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.834 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds