Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 O 1.42897 * 109.44911 * 181.24472 * 12 11 10 14 14 C 1.34913 * 117.00361 * 89.79012 * 13 12 11 15 15 O 1.21636 * 119.99880 * 359.97438 * 14 13 12 16 16 C 1.46368 * 120.00277 * 180.02562 * 14 13 12 17 17 C 1.36696 * 125.98853 * 179.97438 * 16 14 13 18 18 C 1.40213 * 106.72928 * 179.97438 * 17 16 14 19 19 C 1.35359 * 107.12334 * 0.02562 * 18 17 16 20 20 Br 1.89105 * 125.61673 * 179.97438 * 19 18 17 21 21 O 1.33924 * 108.75993 * 359.76804 * 19 18 17 22 22 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 23 23 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 24 24 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 26 26 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 27 27 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 28 28 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 29 29 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 30 30 H 1.08001 * 126.63896 * 359.93872 * 17 16 14 31 31 H 1.07998 * 126.43647 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.49848 * 178.74812 * 22 12 11 33 33 H 1.08999 * 109.49849 * 58.64620 * 22 12 11 34 34 H 1.09004 * 109.59094 * 246.19900 * 23 9 7 35 35 H 1.09001 * 109.59077 * 6.49172 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 8 6.1555 -2.6413 -3.1124 14 6 7.2440 -2.0558 -3.6531 15 8 7.6494 -0.9984 -3.2093 16 6 7.9365 -2.6924 -4.7746 17 6 9.0446 -2.2094 -5.4129 18 6 9.3667 -3.1334 -6.4171 19 6 8.4523 -4.1293 -6.3506 20 35 8.3975 -5.6508 -7.4722 21 8 7.5956 -3.8617 -5.3566 22 6 4.8755 -2.9898 -1.0921 23 6 4.2351 -2.2628 0.0946 24 1 -0.4850 0.8401 0.0004 25 1 2.9908 0.3501 -1.7559 26 1 4.5579 0.3822 -0.9097 27 1 3.7035 -1.5726 -3.0945 28 1 4.9277 -0.2876 -3.2372 29 1 6.2781 -1.3980 -1.4672 30 1 9.5699 -1.2931 -5.1878 31 1 10.1897 -3.0637 -7.1129 32 1 5.6320 -3.6849 -0.7278 33 1 4.1091 -3.5392 -1.6388 34 1 5.0116 -1.7874 0.6940 35 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089799890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -31.466458 kcal Electronic energy + Delta-G solvation = -21669.412807 eV Core-core repulsion = 18103.005020 eV Total energy + Delta-G solvation = -3566.407787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 343.025 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.23388 -40.58773 -37.87284 -36.28476 -33.82834 -32.81954 -32.58915 -30.73083 -30.50969 -29.59707 -25.60513 -23.92774 -22.94779 -22.41991 -21.96226 -20.77499 -19.74629 -18.79458 -17.33772 -17.15604 -16.87210 -16.23248 -15.65707 -15.21666 -14.25816 -14.15115 -13.83366 -13.65157 -13.58301 -13.52828 -13.40208 -12.88958 -12.48830 -12.13571 -11.90277 -11.85564 -11.52124 -11.26433 -11.05718 -10.86236 -10.80626 -10.61321 -10.44930 -10.18704 -10.03397 -9.74051 -9.42958 -9.14466 -8.67913 -7.06392 -5.98340 -3.35437 0.24831 0.31164 1.61245 2.17710 2.58776 2.97548 3.30731 3.47334 3.50017 4.23968 4.47991 4.50563 4.81228 4.85456 4.97699 5.05866 5.12578 5.20183 5.33329 5.45636 5.62848 5.71996 5.91620 5.93787 6.06605 6.14029 6.19448 6.27238 6.46360 6.52802 6.54767 6.61177 6.86080 7.55617 7.90489 8.28958 8.88222 9.67312 10.03304 11.17311 Molecular weight = 343.03amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.002424 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.444595 B =11548.931589 C =11965.424280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 0.880 3.120 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.088 0.912 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.150 4.150 12 C 0.094 3.906 13 O -0.335 6.335 14 C 0.547 3.453 15 O -0.478 6.478 16 C -0.030 4.030 17 C -0.111 4.111 18 C -0.167 4.167 19 C 0.002 3.998 20 Br 0.066 6.934 21 O -0.130 6.130 22 C -0.129 4.129 23 C 0.152 3.848 24 H 0.263 0.737 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.027 0.973 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.967 -10.837 -16.486 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.105 0.895 9 N -0.329 5.329 10 C 0.004 3.996 11 C -0.190 4.190 12 C 0.040 3.960 13 O -0.251 6.251 14 C 0.390 3.610 15 O -0.367 6.367 16 C -0.082 4.082 17 C -0.131 4.131 18 C -0.189 4.189 19 C -0.129 4.129 20 Br 0.150 6.850 21 O -0.026 6.026 22 C -0.169 4.169 23 C 0.026 3.974 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.192 0.808 31 H 0.190 0.810 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.045 0.955 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.577 -11.181 -16.589 29.425 hybrid contribution 0.519 1.437 0.097 1.531 sum 22.097 -9.745 -16.492 29.244 Atomic orbital electron populations 1.69838 1.05721 1.26649 1.52646 1.25283 0.95237 0.97611 0.99311 0.86991 0.80130 0.84687 0.77145 1.21526 1.22976 1.19441 1.18923 0.84829 0.94900 1.40471 0.89452 1.44426 1.08802 1.33302 1.46402 1.21332 0.97421 0.92023 0.88845 1.22547 0.97964 0.98375 1.00111 1.22649 0.94051 0.94423 0.84858 1.86306 1.39136 1.51698 1.47917 1.19107 0.79108 0.82420 0.80370 1.90968 1.65637 1.20732 1.59348 1.21153 0.99767 0.88036 0.99276 1.22043 0.95117 1.01252 0.94688 1.21749 1.01554 0.93436 1.02125 1.24451 0.95138 0.98765 0.94591 1.96937 1.98294 1.32512 1.57271 1.84250 1.46308 1.34577 1.37425 1.22250 0.99935 0.97389 0.97285 1.20916 0.92526 0.91591 0.92409 0.92675 0.90252 0.95238 0.90493 0.92173 0.89981 0.80759 0.81040 0.91624 0.90484 0.95513 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.69 13.97 55.49 0.78 -26.91 16 2 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 3 Si 0.88 22.37 24.34 -169.99 -4.14 18.23 16 4 H -0.29 -7.07 6.62 56.52 0.37 -6.70 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.73 6.64 56.52 0.38 -6.35 16 7 C -0.26 -7.30 10.03 -15.06 -0.15 -7.45 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.61 -14.34 2.77 -172.32 -0.48 -14.82 16 10 C 0.13 2.88 4.20 -3.71 -0.02 2.86 16 11 C -0.15 -2.85 5.71 -26.59 -0.15 -3.00 16 12 C 0.09 1.62 2.36 -26.67 -0.06 1.56 16 13 O -0.33 -5.42 9.77 -42.54 -0.42 -5.84 16 14 C 0.55 8.23 7.87 34.00 0.27 8.49 16 15 O -0.48 -7.92 16.10 -19.37 -0.31 -8.24 16 16 C -0.03 -0.37 7.18 -36.87 -0.26 -0.64 16 17 C -0.11 -1.07 10.62 -39.40 -0.42 -1.48 16 18 C -0.17 -1.33 10.82 -39.87 -0.43 -1.77 16 19 C 0.00 0.01 7.80 29.71 0.23 0.25 16 20 Br 0.07 0.50 34.09 -68.01 -2.32 -1.82 16 21 O -0.13 -1.62 10.67 4.54 0.05 -1.57 16 22 C -0.13 -2.15 5.73 -26.61 -0.15 -2.30 16 23 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.08 1.91 4.49 -51.93 -0.23 1.68 16 26 H 0.03 0.65 7.07 -51.93 -0.37 0.28 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.43 7.11 -51.93 -0.37 1.06 16 30 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -31.33 315.95 -7.29 -38.62 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -3.95 Total: -2.45 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.26 Total: 0.04 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.30 Total: -41.74 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.68 Total: -15.65 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Atomic # 35 Polarization: 0.50 SS G_CDS: -2.32 Total: -1.82 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.33 -7.29 -38.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089799890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.156 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds