Wall clock time and date at job start Tue Mar 31 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 C 1.50702 * 109.47140 * 120.00332 * 2 1 3 5 5 C 1.38442 * 119.81049 * 120.00139 * 4 2 1 6 6 C 1.37834 * 120.19190 * 179.97438 * 5 4 2 7 7 C 1.40036 * 119.80740 * 0.02562 * 6 5 4 8 8 C 1.46773 * 120.19184 * 180.02562 * 7 6 5 9 9 C 1.36426 * 120.00387 * 148.25651 * 8 7 6 10 10 C 1.47099 * 120.00157 * 173.34208 * 9 8 7 11 11 O 1.21597 * 120.00146 * 359.97438 * 10 9 8 12 12 O 1.34791 * 120.00195 * 179.72034 * 10 9 8 13 13 C 1.34812 * 117.00501 * 180.27154 * 12 10 9 14 14 H 1.08006 * 119.99719 * 0.02562 * 13 12 10 15 15 C 1.38830 * 120.00174 * 180.02562 * 13 12 10 16 16 N 1.31402 * 119.99856 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99923 * 0.02562 * 15 13 12 18 18 H 1.48489 * 109.47108 * 89.99965 * 17 15 13 19 19 H 1.48503 * 109.46457 * 209.99721 * 17 15 13 20 20 H 1.48500 * 109.46942 * 329.99567 * 17 15 13 21 21 C 1.47460 * 119.99913 * 353.33654 * 9 8 7 22 22 C 1.35046 * 125.27835 * 116.95175 * 21 9 8 23 23 C 1.37875 * 114.66660 * 180.02562 * 22 21 9 24 24 C 1.33688 * 115.08443 * 359.97438 * 23 22 21 25 25 S 1.75854 * 109.78656 * 359.73722 * 24 23 22 26 26 C 1.40046 * 119.62216 * 0.26573 * 7 6 5 27 27 C 1.37838 * 119.80214 * 359.43643 * 26 7 6 28 28 H 1.08997 * 109.46749 * 300.00054 * 1 2 3 29 29 H 1.08995 * 109.47107 * 59.99596 * 1 2 3 30 30 H 1.08995 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47227 * 240.00059 * 2 1 3 32 32 H 1.09004 * 109.47437 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47403 * 300.00222 * 3 2 1 34 34 H 1.09004 * 109.47138 * 60.00643 * 3 2 1 35 35 H 1.08005 * 119.90012 * 359.97438 * 5 4 2 36 36 H 1.07998 * 120.09375 * 180.02562 * 6 5 4 37 37 H 1.08004 * 120.00162 * 328.25605 * 8 7 6 38 38 H 0.97001 * 120.00077 * 180.02562 * 16 15 13 39 39 H 1.07997 * 122.66397 * 359.97438 * 22 21 9 40 40 H 1.08001 * 122.45968 * 180.02562 * 23 22 21 41 41 H 1.08005 * 125.10481 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.09837 * 179.70688 * 26 7 6 43 43 H 1.08003 * 119.90560 * 180.29511 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8280 -1.8357 1.0988 6 6 3.2922 -2.4913 2.2188 7 6 2.9563 -2.0164 3.4927 8 6 3.4465 -2.7077 4.6911 9 6 3.7075 -2.0002 5.8279 10 6 4.0572 -2.7066 7.0699 11 8 4.1132 -3.9212 7.0834 12 8 4.3206 -2.0073 8.1918 13 6 4.6399 -2.7154 9.2936 14 1 4.6760 -3.7940 9.2507 15 6 4.9223 -2.0582 10.4834 16 7 5.2331 -2.7484 11.5575 17 14 4.8592 -0.1927 10.5578 18 1 3.4894 0.2417 10.9318 19 1 5.8276 0.2952 11.5724 20 1 5.2107 0.3678 9.2283 21 6 3.6391 -0.5272 5.8117 22 6 2.7757 0.2215 6.5312 23 6 2.9031 1.5821 6.3482 24 6 3.8590 1.9515 5.4897 25 16 4.6747 0.5273 4.8582 26 6 2.1459 -0.8810 3.6166 27 6 1.6955 -0.2341 2.4859 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 3.0858 -2.2008 0.1155 36 1 3.9132 -3.3687 2.1143 37 1 3.6005 -3.7765 4.6729 38 1 5.4301 -2.2893 12.3889 39 1 2.0432 -0.2112 7.1964 40 1 2.2771 2.2971 6.8614 41 1 4.0977 2.9716 5.2273 42 1 1.8782 -0.5109 4.5953 43 1 1.0743 0.6445 2.5796 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089893384.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:11 Heat of formation + Delta-G solvation = -9.947052 kcal Electronic energy + Delta-G solvation = -26779.015818 eV Core-core repulsion = 23074.413594 eV Total energy + Delta-G solvation = -3704.602223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.108 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -39.87697 -39.14318 -37.65458 -36.10193 -35.35189 -33.46458 -32.37636 -30.97045 -29.94118 -27.93006 -27.39536 -25.94869 -24.31968 -23.51855 -22.62937 -21.64574 -20.08318 -19.69339 -18.61347 -17.98838 -17.71938 -16.30001 -16.00132 -15.44058 -15.31961 -15.10217 -14.67929 -14.60419 -14.16053 -13.98563 -13.86404 -13.76028 -13.43661 -12.94633 -12.65712 -12.60506 -12.49520 -12.36548 -12.27196 -12.20391 -12.09569 -11.63971 -11.43409 -11.36418 -11.33384 -10.85452 -10.76232 -10.66968 -10.54083 -10.40389 -9.75664 -9.70243 -9.41026 -9.00148 -8.73479 -8.49905 -8.20797 -7.80536 -6.45215 -4.14205 0.54077 1.16751 1.44259 1.68668 2.09972 2.28171 2.95830 3.18551 3.22448 3.38952 3.70043 3.95231 4.10444 4.22204 4.45929 4.58442 4.84265 4.94750 4.95645 4.99048 5.07880 5.09509 5.19794 5.20953 5.36166 5.38659 5.43728 5.57113 5.60097 5.65526 5.71348 5.78994 5.94707 5.96263 5.97687 5.99466 6.02015 6.20805 6.32130 6.36394 6.46329 6.57498 6.63432 6.72110 6.73625 6.96781 7.67047 7.96592 8.56808 8.93225 9.64294 10.62284 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.017866 B = 0.003426 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.881637 B = 8170.536991 C = 9165.109315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.072 4.072 5 C -0.124 4.124 6 C -0.095 4.095 7 C -0.068 4.068 8 C -0.037 4.037 9 C -0.058 4.058 10 C 0.445 3.555 11 O -0.538 6.538 12 O -0.232 6.232 13 C -0.371 4.371 14 H 0.112 0.888 15 C 0.068 3.932 16 N -0.865 5.865 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.254 1.254 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.225 4.225 25 S 0.117 5.883 26 C -0.093 4.093 27 C -0.116 4.116 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.146 0.854 38 H 0.281 0.719 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.161 0.839 42 H 0.135 0.865 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 10.760 -22.221 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.072 4.072 5 C -0.142 4.142 6 C -0.113 4.113 7 C -0.068 4.068 8 C -0.059 4.059 9 C -0.061 4.061 10 C 0.292 3.708 11 O -0.435 6.435 12 O -0.139 6.139 13 C -0.447 4.447 14 H 0.129 0.871 15 C -0.137 4.137 16 N -0.504 5.504 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.178 1.178 21 C -0.238 4.238 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.360 4.360 25 S 0.385 5.615 26 C -0.111 4.111 27 C -0.134 4.134 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.164 0.836 38 H 0.092 0.908 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.178 0.822 42 H 0.152 0.848 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.952 10.323 -22.966 25.874 hybrid contribution -1.000 0.938 1.467 2.008 sum -6.952 11.262 -21.499 25.246 Atomic orbital electron populations 1.21859 0.94390 1.02035 1.01866 1.20134 0.95907 0.96062 0.95425 1.21857 1.01334 0.95110 1.01841 1.19953 0.97269 0.95444 0.94518 1.20884 0.99014 0.96031 0.98303 1.21302 0.99055 0.99615 0.91332 1.18923 0.99232 0.96060 0.92590 1.22470 0.93709 0.99991 0.89707 1.19261 1.05014 0.89131 0.92694 1.20208 0.80748 0.85734 0.84074 1.90708 1.53123 1.14454 1.85262 1.83604 1.71735 1.40487 1.18096 1.20754 1.45734 0.93784 0.84400 0.87085 1.24563 0.95305 1.00261 0.93602 1.69587 1.43142 1.36887 1.00741 0.86276 0.78588 0.83580 0.79175 1.19628 1.20687 1.17783 1.22727 1.01061 0.95847 1.04158 1.20393 1.01587 0.92871 1.00967 1.20013 1.00092 0.95772 0.99986 1.25629 1.02889 1.01830 1.05701 1.84175 1.36344 0.96255 1.44749 1.21863 0.95831 0.93766 0.99682 1.20809 1.00826 1.00147 0.91605 0.92372 0.92537 0.92516 0.90618 0.92466 0.92559 0.92361 0.86186 0.85670 0.83649 0.90831 0.83938 0.84382 0.82178 0.84767 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.00 37.16 0.33 -0.69 16 2 C -0.06 -0.44 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -1.04 9.00 37.16 0.33 -0.71 16 4 C -0.07 -0.72 4.80 -104.47 -0.50 -1.22 16 5 C -0.12 -1.28 9.65 -39.65 -0.38 -1.66 16 6 C -0.09 -1.11 9.80 -39.06 -0.38 -1.49 16 7 C -0.07 -0.94 5.30 -105.10 -0.56 -1.49 16 8 C -0.04 -0.61 9.41 -36.79 -0.35 -0.95 16 9 C -0.06 -1.11 5.76 -103.20 -0.59 -1.70 16 10 C 0.44 10.94 7.82 34.33 0.27 11.21 16 11 O -0.54 -14.54 15.53 -19.34 -0.30 -14.84 16 12 O -0.23 -6.24 8.06 -21.68 -0.17 -6.41 16 13 C -0.37 -11.08 10.11 30.95 0.31 -10.77 16 14 H 0.11 3.63 7.09 -52.48 -0.37 3.26 16 15 C 0.07 1.94 5.50 -17.52 -0.10 1.84 16 16 N -0.87 -25.50 13.96 55.49 0.77 -24.72 16 17 Si 0.90 21.59 28.62 -169.99 -4.86 16.73 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 21 C -0.12 -2.09 2.83 -36.96 -0.10 -2.19 16 22 C -0.13 -2.09 8.57 -40.85 -0.35 -2.44 16 23 C -0.13 -1.77 10.16 -41.31 -0.42 -2.19 16 24 C -0.22 -2.92 11.22 29.14 0.33 -2.59 16 25 S 0.12 1.74 22.00 -107.50 -2.37 -0.62 16 26 C -0.09 -1.22 7.49 -39.05 -0.29 -1.52 16 27 C -0.12 -1.28 8.68 -39.65 -0.34 -1.63 16 28 H 0.06 0.42 7.37 -51.93 -0.38 0.04 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 35 H 0.12 0.97 7.93 -52.48 -0.42 0.55 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.15 2.34 7.58 -52.48 -0.40 1.95 16 38 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.14 2.33 8.06 -52.49 -0.42 1.90 16 40 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.13 1.87 4.76 -52.49 -0.25 1.62 16 43 H 0.12 1.15 7.07 -52.48 -0.37 0.78 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -32.48 377.84 -9.81 -42.29 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.50 Total: 2.81 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -3.08 Total: -20.92 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.77 Total: -24.72 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.48 Total: -21.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.73 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.37 Total: -0.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.48 -9.81 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089893384.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.342 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds