Wall clock time and date at job start Tue Mar 31 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.46840 * 2 1 4 4 C 1.35965 * 117.00264 * 179.97438 * 3 2 1 5 5 C 1.38731 * 119.98278 * 0.27615 * 4 3 2 6 6 C 1.38087 * 120.01779 * 180.28037 * 5 4 3 7 7 C 1.38864 * 119.98028 * 359.43750 * 6 5 4 8 8 N 1.40031 * 120.01837 * 180.30228 * 7 6 5 9 9 C 1.46492 * 120.00483 * 172.62509 * 8 7 6 10 10 C 1.50706 * 109.47339 * 96.69100 * 9 8 7 11 11 H 1.07999 * 119.99695 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00087 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99995 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00078 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47208 * 89.99969 * 14 12 10 16 16 H 1.48504 * 109.46985 * 210.00108 * 14 12 10 17 17 H 1.48501 * 109.46915 * 329.99790 * 14 12 10 18 18 C 1.34781 * 119.99649 * 352.62455 * 8 7 6 19 19 O 1.21709 * 119.99993 * 3.75453 * 18 8 7 20 20 C 1.46648 * 119.99999 * 183.75545 * 18 8 7 21 21 N 1.37652 * 126.23233 * 7.19110 * 20 18 8 22 22 H 0.97000 * 125.67908 * 0.03514 * 21 20 18 23 23 C 1.35555 * 108.64204 * 179.97438 * 21 20 18 24 24 C 1.50697 * 125.56490 * 180.02562 * 23 21 20 25 25 C 1.35449 * 108.86885 * 0.02562 * 23 21 20 26 26 C 1.37891 * 126.23484 * 186.88282 * 20 18 8 27 27 C 1.50698 * 126.45575 * 359.97438 * 26 20 18 28 28 C 1.38872 * 119.96863 * 0.28433 * 7 6 5 29 29 C 1.38088 * 119.98037 * 359.97438 * 28 7 6 30 30 H 1.09000 * 109.47234 * 60.00498 * 1 2 3 31 31 H 1.09006 * 109.46754 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47376 * 299.99983 * 1 2 3 33 33 H 1.08996 * 109.47526 * 239.99655 * 2 1 3 34 34 H 1.09000 * 109.47234 * 119.99502 * 2 1 3 35 35 H 1.08000 * 119.99075 * 359.97438 * 5 4 3 36 36 H 1.07996 * 120.00745 * 179.72173 * 6 5 4 37 37 H 1.08999 * 109.47358 * 216.69212 * 9 8 7 38 38 H 1.08998 * 109.47243 * 336.69509 * 9 8 7 39 39 H 0.96993 * 119.99758 * 180.02562 * 13 12 10 40 40 H 1.09003 * 109.46416 * 90.00226 * 24 23 21 41 41 H 1.08998 * 109.47393 * 210.00205 * 24 23 21 42 42 H 1.09000 * 109.46888 * 330.00753 * 24 23 21 43 43 H 1.08011 * 126.06272 * 180.02562 * 25 23 21 44 44 H 1.08999 * 109.46951 * 90.00360 * 27 26 20 45 45 H 1.09002 * 109.47428 * 210.00340 * 27 26 20 46 46 H 1.09004 * 109.47346 * 330.00554 * 27 26 20 47 47 H 1.07997 * 120.00942 * 180.02562 * 28 7 6 48 48 H 1.07994 * 119.98967 * 180.02562 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5256 0.0005 5 6 4.1990 0.4253 -0.0047 6 6 5.5681 0.6054 0.0017 7 6 6.0991 1.8885 0.0016 8 7 7.4873 2.0722 0.0017 9 6 8.0486 3.4155 -0.1613 10 6 8.3701 3.9933 1.1930 11 1 8.1762 3.4172 2.0857 12 6 8.9119 5.2573 1.2922 13 7 9.1929 5.7613 2.4740 14 14 9.2467 6.2539 -0.2518 15 1 8.0483 7.0639 -0.5877 16 1 10.4037 7.1550 -0.0181 17 1 9.5544 5.3349 -1.3770 18 6 8.3072 1.0129 0.1517 19 8 7.8438 -0.1105 0.2185 20 6 9.7574 1.2141 0.2345 21 7 10.4077 2.4248 0.3128 22 1 9.9817 3.2962 0.3232 23 6 11.7425 2.1965 0.3744 24 6 12.8095 3.2564 0.4696 25 6 11.9606 0.8603 0.3363 26 6 10.7177 0.2248 0.2539 27 6 10.4738 -1.2612 0.1949 28 6 5.2528 2.9896 0.0010 29 6 3.8839 2.8077 0.0000 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.7859 -0.5726 -0.0088 36 1 6.2256 -0.2513 0.0021 37 1 8.9592 3.3589 -0.7577 38 1 7.3231 4.0537 -0.6656 39 1 9.5737 6.6506 2.5438 40 1 13.0129 3.4739 1.5181 41 1 13.7204 2.8993 -0.0108 42 1 12.4668 4.1628 -0.0296 43 1 12.9235 0.3720 0.3691 44 1 10.4688 -1.5875 -0.8451 45 1 11.2651 -1.7811 0.7350 46 1 9.5111 -1.4899 0.6520 47 1 5.6651 3.9877 0.0005 48 1 3.2257 3.6638 -0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089991124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:01 Heat of formation + Delta-G solvation = 23.686994 kcal Electronic energy + Delta-G solvation = -30368.222395 eV Core-core repulsion = 26390.451628 eV Total energy + Delta-G solvation = -3977.770767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.17751 -39.99304 -38.98617 -36.93674 -35.50931 -33.05446 -32.16354 -31.86557 -31.01492 -30.53130 -29.08203 -28.07259 -27.09394 -25.55313 -24.02745 -23.11377 -22.44455 -21.32319 -20.09837 -19.74429 -18.45474 -17.99256 -17.49416 -17.05854 -16.54272 -15.99516 -15.71008 -15.08495 -14.78918 -14.36630 -14.26780 -13.86782 -13.68300 -13.45022 -13.21876 -13.03191 -13.00561 -12.90732 -12.68288 -12.59342 -12.57325 -12.39426 -12.22067 -12.02895 -11.78596 -11.65871 -11.56476 -11.46724 -11.37427 -10.99644 -10.93142 -10.86627 -10.57808 -10.54454 -10.05554 -9.18567 -9.12563 -8.80360 -8.57331 -8.11321 -7.51758 -6.96172 -6.64140 -4.72478 1.62507 1.80281 2.26315 2.85685 2.93051 2.98143 3.21688 3.34858 3.48053 3.83152 3.84380 4.02786 4.33587 4.63023 4.86062 4.91290 5.08871 5.15639 5.25712 5.34436 5.42437 5.46795 5.59303 5.67495 5.68643 5.69880 5.81780 5.86071 5.86912 5.90424 5.93284 6.05395 6.12854 6.17130 6.20296 6.27520 6.34963 6.46825 6.50275 6.56072 6.77802 6.83256 6.88268 6.91903 6.95870 7.41322 7.43564 7.61680 7.77053 7.77959 8.01018 8.28334 8.48367 8.67486 8.86182 10.45884 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.003849 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.530681 B = 7272.740171 C = 9327.218500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.322 6.322 4 C 0.089 3.911 5 C -0.189 4.189 6 C -0.136 4.136 7 C 0.137 3.863 8 N -0.530 5.530 9 C 0.184 3.816 10 C -0.565 4.565 11 H 0.091 0.909 12 C 0.083 3.917 13 N -0.859 5.859 14 Si 0.849 3.151 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.261 1.261 18 C 0.596 3.404 19 O -0.532 6.532 20 C -0.050 4.050 21 N -0.508 5.508 22 H 0.438 0.562 23 C 0.041 3.959 24 C -0.087 4.087 25 C -0.221 4.221 26 C -0.091 4.091 27 C -0.084 4.084 28 C -0.111 4.111 29 C -0.131 4.131 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.123 0.877 36 H 0.185 0.815 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.275 0.725 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.133 0.867 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.140 0.860 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.779 -7.095 -6.316 10.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.237 6.237 4 C 0.044 3.956 5 C -0.208 4.208 6 C -0.155 4.155 7 C 0.042 3.958 8 N -0.249 5.249 9 C 0.062 3.938 10 C -0.603 4.603 11 H 0.109 0.891 12 C -0.126 4.126 13 N -0.493 5.493 14 Si 0.673 3.327 15 H -0.184 1.184 16 H -0.195 1.195 17 H -0.185 1.185 18 C 0.390 3.610 19 O -0.413 6.413 20 C -0.165 4.165 21 N -0.118 5.118 22 H 0.297 0.703 23 C -0.080 4.080 24 C -0.145 4.145 25 C -0.246 4.246 26 C -0.100 4.100 27 C -0.141 4.141 28 C -0.131 4.131 29 C -0.150 4.150 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.201 0.799 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.151 0.849 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.158 0.842 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.166 -7.093 -6.168 10.281 hybrid contribution 0.090 1.187 -0.482 1.284 sum -4.076 -5.906 -6.650 9.783 Atomic orbital electron populations 1.21762 0.93215 1.02493 1.03305 1.22674 0.95377 0.82718 1.01232 1.86014 1.19613 1.28489 1.89578 1.18948 0.81775 0.94320 1.00542 1.21161 0.94028 0.97412 1.08204 1.22599 0.95260 0.98623 0.99016 1.17914 0.82489 0.94069 1.01365 1.45395 1.03732 1.09168 1.66629 1.20340 0.95103 0.79642 0.98699 1.21413 1.44528 1.02043 0.92293 0.89145 1.24956 0.94671 0.96660 0.96267 1.69855 1.39520 1.17123 1.22766 0.87247 0.80115 0.81937 0.83394 1.18424 1.19547 1.18511 1.17178 0.84679 0.83525 0.75600 1.90319 1.74605 1.23819 1.52558 1.19786 0.91152 0.86010 1.19560 1.44207 1.05608 1.10505 1.51487 0.70254 1.20586 0.85162 0.95947 1.06352 1.20347 0.95441 0.95757 1.02946 1.20376 0.97357 0.91887 1.14940 1.19750 0.91437 0.94614 1.04196 1.20263 1.02528 0.90105 1.01214 1.20850 0.91844 0.98778 1.01642 1.20104 0.94274 0.94571 1.06028 0.91717 0.90688 0.91662 0.92358 0.92292 0.85927 0.79862 0.94483 0.93193 0.91429 0.90640 0.90403 0.92005 0.84912 0.92383 0.92603 0.90312 0.84221 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 2 C 0.06 0.62 5.46 37.16 0.20 0.82 16 3 O -0.32 -4.82 10.14 -19.63 -0.20 -5.02 16 4 C 0.09 1.49 6.69 -39.22 -0.26 1.23 16 5 C -0.19 -3.14 9.03 -39.45 -0.36 -3.49 16 6 C -0.14 -2.59 9.04 -39.41 -0.36 -2.95 16 7 C 0.14 2.79 6.49 -83.64 -0.54 2.25 16 8 N -0.53 -11.47 2.70 -116.16 -0.31 -11.79 16 9 C 0.18 4.00 3.28 -5.19 -0.02 3.98 16 10 C -0.56 -13.90 7.61 -34.44 -0.26 -14.16 16 11 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 12 C 0.08 2.03 5.11 -17.82 -0.09 1.94 16 13 N -0.86 -22.68 13.96 55.43 0.77 -21.90 16 14 Si 0.85 17.58 27.07 -169.99 -4.60 12.98 16 15 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.26 -5.12 6.54 56.52 0.37 -4.75 16 18 C 0.60 13.06 7.53 -12.86 -0.10 12.97 16 19 O -0.53 -11.50 11.18 5.18 0.06 -11.44 16 20 C -0.05 -1.07 6.60 -81.99 -0.54 -1.61 16 21 N -0.51 -10.66 4.74 -5.70 -0.03 -10.69 16 22 H 0.44 9.59 2.72 -40.82 -0.11 9.48 16 23 C 0.04 0.75 7.13 -81.94 -0.58 0.17 16 24 C -0.09 -1.28 10.41 36.00 0.37 -0.90 16 25 C -0.22 -3.85 10.65 -39.98 -0.43 -4.27 16 26 C -0.09 -1.73 6.21 -104.15 -0.65 -2.38 16 27 C -0.08 -1.35 9.91 36.00 0.36 -1.00 16 28 C -0.11 -2.10 9.16 -39.40 -0.36 -2.46 16 29 C -0.13 -2.24 9.98 -39.46 -0.39 -2.64 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 34 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 35 H 0.12 1.70 6.29 -52.49 -0.33 1.37 16 36 H 0.19 3.65 4.53 -56.21 -0.25 3.39 16 37 H 0.04 0.81 4.55 -51.93 -0.24 0.57 16 38 H 0.05 1.03 5.59 -51.93 -0.29 0.74 16 39 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.37 6.37 -51.93 -0.33 1.04 16 47 H 0.14 2.65 6.21 -52.49 -0.33 2.32 16 48 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -28.02 380.31 -8.69 -36.71 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -6.49 Total: 18.83 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -3.62 Total: -13.41 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.43 Total: -44.38 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.14 Total: -16.47 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -4.60 Total: 12.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.02 -8.69 -36.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089991124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.398 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds