Wall clock time and date at job start Tue Mar 31 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 120.00078 * 2 1 4 4 H 1.48494 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46668 * 300.00042 * 3 2 1 6 6 H 1.48494 * 109.47167 * 59.99662 * 3 2 1 7 7 C 1.39936 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99933 * 197.88818 * 7 2 1 9 9 C 1.41436 * 120.00281 * 17.89363 * 7 2 1 10 10 C 1.40780 * 120.17993 * 204.43376 * 9 7 2 11 11 C 1.37715 * 120.04081 * 180.02562 * 10 9 7 12 12 C 1.38371 * 120.41092 * 359.70207 * 11 10 9 13 13 C 1.39884 * 120.35562 * 0.56072 * 12 11 10 14 14 C 1.47887 * 120.02070 * 179.74420 * 13 12 11 15 15 O 1.21549 * 119.99803 * 179.72428 * 14 13 12 16 16 N 1.34778 * 120.00232 * 359.71557 * 14 13 12 17 17 C 1.46501 * 119.99718 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46825 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47107 * 180.02562 * 18 17 16 20 20 C 1.50705 * 109.47183 * 180.02562 * 19 18 17 21 21 O 1.21300 * 119.99712 * 359.97438 * 20 19 18 22 22 N 1.34782 * 119.99924 * 180.02562 * 20 19 18 23 23 C 1.40760 * 119.99571 * 179.97438 * 22 20 19 24 24 C 1.40254 * 126.08516 * 0.04137 * 23 22 20 25 25 N 1.30828 * 108.33559 * 179.67894 * 24 23 22 26 26 N 1.40075 * 108.36885 * 0.44312 * 25 24 23 27 27 H 0.96994 * 126.05092 * 179.81512 * 26 25 24 28 28 C 1.35760 * 126.07686 * 179.97438 * 23 22 20 29 29 C 1.39033 * 119.94971 * 359.46018 * 13 12 11 30 30 H 0.96997 * 120.00388 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.98191 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.79287 * 179.97438 * 11 10 9 33 33 H 1.07995 * 119.82203 * 180.27315 * 12 11 10 34 34 H 0.96993 * 119.99811 * 0.02562 * 16 14 13 35 35 H 1.08993 * 109.47440 * 60.00147 * 17 16 14 36 36 H 1.09002 * 109.47308 * 300.00096 * 17 16 14 37 37 H 1.09001 * 109.46972 * 59.99956 * 18 17 16 38 38 H 1.09002 * 109.47038 * 299.99995 * 18 17 16 39 39 H 1.08993 * 109.47317 * 59.99782 * 19 18 17 40 40 H 1.09002 * 109.47148 * 299.99904 * 19 18 17 41 41 H 0.96994 * 119.99996 * 359.97438 * 22 20 19 42 42 H 1.08001 * 125.82660 * 359.97438 * 24 23 22 43 43 H 1.08003 * 126.21675 * 0.06033 * 28 23 22 44 44 H 1.08000 * 120.19982 * 180.23165 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2344 0.2878 9 6 1.3521 -2.4073 -0.3753 10 6 1.8263 -3.6499 0.0863 11 6 1.1859 -4.8122 -0.2819 12 6 0.0712 -4.7686 -1.1005 13 6 -0.4112 -3.5436 -1.5732 14 6 -1.5999 -3.5061 -2.4524 15 8 -2.0217 -2.4411 -2.8589 16 7 -2.2153 -4.6527 -2.8030 17 6 -3.3924 -4.6155 -3.6743 18 6 -3.8940 -6.0407 -3.9151 19 6 -5.1229 -6.0019 -4.8255 20 6 -5.6173 -7.4057 -5.0622 21 8 -5.0428 -8.3449 -4.5530 22 7 -6.6972 -7.6177 -5.8404 23 6 -7.1586 -8.9289 -6.0618 24 6 -6.5958 -10.1021 -5.5384 25 7 -7.3016 -11.1203 -5.9587 26 7 -8.3334 -10.6361 -6.7730 27 1 -9.0064 -11.1720 -7.2210 28 6 -8.2284 -9.2828 -6.8191 29 6 0.2240 -2.3611 -1.2112 30 1 -0.4850 0.8400 -0.0004 31 1 2.6930 -3.6917 0.7294 32 1 1.5534 -5.7633 0.0742 33 1 -0.4263 -5.6855 -1.3797 34 1 -1.8788 -5.5026 -2.4784 35 1 -3.1250 -4.1583 -4.6269 36 1 -4.1786 -4.0296 -3.1981 37 1 -4.1615 -6.4975 -2.9622 38 1 -3.1079 -6.6269 -4.3911 39 1 -4.8550 -5.5452 -5.7782 40 1 -5.9091 -5.4156 -4.3499 41 1 -7.1563 -6.8667 -6.2478 42 1 -5.7306 -10.1554 -4.8942 43 1 -8.8775 -8.6104 -7.3603 44 1 -0.1472 -1.4128 -1.5709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095394929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:34 Heat of formation + Delta-G solvation = 14.483592 kcal Electronic energy + Delta-G solvation = -27140.267135 eV Core-core repulsion = 23058.556935 eV Total energy + Delta-G solvation = -4081.710200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.148 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.71741 -39.89559 -39.13875 -37.05311 -35.48171 -35.03069 -33.74359 -32.65810 -31.64228 -30.26119 -29.49111 -29.37086 -26.88967 -25.24594 -23.15673 -22.75196 -21.84299 -21.22994 -20.85502 -20.61920 -19.39670 -18.50683 -17.69661 -17.40041 -16.36534 -16.16557 -16.08230 -15.45575 -15.31470 -15.02710 -14.66436 -14.65356 -14.58281 -14.17501 -13.68440 -13.56648 -13.28894 -13.19746 -12.65486 -12.45595 -12.41521 -12.30019 -11.65302 -11.55453 -11.30088 -11.28806 -11.17462 -11.08841 -10.99858 -10.71041 -10.46935 -10.18043 -10.02785 -10.00775 -9.66635 -9.20595 -9.00567 -8.64307 -8.24021 -7.60819 -7.49747 -6.78708 -4.39547 1.32281 2.04039 2.23232 2.26105 2.73851 2.82416 2.84109 3.08969 3.13875 3.16457 3.71185 3.89040 3.93601 4.25109 4.41082 4.60661 4.65391 4.74020 4.74987 5.05413 5.07206 5.23752 5.31691 5.35842 5.59775 5.62859 5.74229 5.81738 6.02078 6.09276 6.17585 6.30972 6.43423 6.74044 6.79951 6.87954 6.96034 7.00859 7.04475 7.23215 7.24942 7.40386 7.72642 7.78249 7.80156 7.94887 8.11780 8.21306 8.52775 8.82131 8.85488 8.97321 10.16095 Molecular weight = 342.15amu Principal moments of inertia in cm(-1) A = 0.029397 B = 0.001568 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.258380 B =17848.027234 C =18701.666460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.129 4.129 14 C 0.564 3.436 15 O -0.548 6.548 16 N -0.737 5.737 17 C 0.121 3.879 18 C -0.117 4.117 19 C -0.133 4.133 20 C 0.516 3.484 21 O -0.524 6.524 22 N -0.648 5.648 23 C 0.002 3.998 24 C 0.055 3.945 25 N -0.284 5.284 26 N -0.477 5.477 27 H 0.443 0.557 28 C 0.018 3.982 29 C -0.093 4.093 30 H 0.284 0.716 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.411 0.589 42 H 0.208 0.792 43 H 0.180 0.820 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 -13.087 -13.720 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.237 4.237 13 C -0.132 4.132 14 C 0.355 3.645 15 O -0.426 6.426 16 N -0.392 5.392 17 C -0.003 4.003 18 C -0.155 4.155 19 C -0.173 4.173 20 C 0.304 3.696 21 O -0.399 6.399 22 N -0.294 5.294 23 C -0.102 4.102 24 C -0.133 4.133 25 N -0.107 5.107 26 N -0.188 5.188 27 H 0.288 0.712 28 C -0.131 4.131 29 C -0.113 4.113 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.247 0.753 42 H 0.224 0.776 43 H 0.197 0.803 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.392 -14.021 -13.579 26.143 hybrid contribution -0.230 1.365 -0.334 1.424 sum -17.622 -12.657 -13.913 25.774 Atomic orbital electron populations 1.69798 1.07582 1.29636 1.33781 1.25962 0.94757 1.01542 0.92312 0.86244 0.80910 0.80859 0.78652 1.18335 1.19578 1.19939 1.19617 0.98247 0.91045 1.39972 0.90054 1.17608 0.91216 0.92467 0.89192 1.21108 1.03509 0.92769 1.05738 1.20444 0.96010 0.96748 0.98438 1.20363 1.01211 0.94686 1.07444 1.19485 0.96617 0.95327 1.01799 1.18839 0.83272 0.82810 0.79602 1.90688 1.66368 1.29932 1.55625 1.45919 1.31024 1.09858 1.52351 1.21198 0.88383 0.95885 0.94824 1.21543 0.96674 0.96765 1.00554 1.21546 0.99951 0.92978 1.02866 1.20881 0.79036 0.92223 0.77444 1.90611 1.56258 1.44345 1.48668 1.42915 1.30517 1.05675 1.50295 1.17856 0.99362 0.86294 1.06722 1.24595 1.00639 0.87727 1.00357 1.77409 1.00205 1.22950 1.10154 1.46090 1.26637 1.04841 1.41239 0.71214 1.21986 1.00498 0.86548 1.04090 1.21632 0.96479 0.96445 0.96716 0.90520 0.88620 0.88870 0.89134 0.76397 0.91830 0.91800 0.90266 0.90291 0.88068 0.88059 0.75346 0.77620 0.80324 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.79 10.96 55.55 0.61 -20.18 16 2 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 3 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.12 9.05 -37.73 -0.34 -12.46 16 8 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 9 C 0.10 2.60 5.57 -106.87 -0.60 2.00 16 10 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 11 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 12 C -0.22 -4.60 9.55 -38.92 -0.37 -4.97 16 13 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 14 C 0.56 12.30 7.77 -12.31 -0.10 12.20 16 15 O -0.55 -13.64 16.33 5.32 0.09 -13.55 16 16 N -0.74 -12.00 5.51 -61.24 -0.34 -12.33 16 17 C 0.12 1.53 5.67 -4.04 -0.02 1.51 16 18 C -0.12 -1.11 4.62 -26.73 -0.12 -1.24 16 19 C -0.13 -0.86 5.70 -27.88 -0.16 -1.02 16 20 C 0.52 4.38 7.80 -10.98 -0.09 4.29 16 21 O -0.52 -6.34 13.14 5.54 0.07 -6.27 16 22 N -0.65 -4.04 5.47 -10.03 -0.05 -4.10 16 23 C 0.00 0.02 6.90 -83.88 -0.58 -0.56 16 24 C 0.05 0.58 10.84 -17.22 -0.19 0.39 16 25 N -0.28 -2.92 12.69 30.70 0.39 -2.53 16 26 N -0.48 -3.00 7.40 30.69 0.23 -2.77 16 27 H 0.44 1.26 8.96 -182.62 -1.64 -0.37 16 28 C 0.02 0.09 12.05 -16.68 -0.20 -0.11 16 29 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 30 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 31 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 1.59 6.38 -52.49 -0.33 1.25 16 34 H 0.40 5.76 6.49 -40.82 -0.26 5.49 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.41 1.06 8.83 -40.82 -0.36 0.70 16 42 H 0.21 2.40 5.92 -52.49 -0.31 2.09 16 43 H 0.18 0.20 8.06 -52.48 -0.42 -0.22 16 44 H 0.13 3.86 5.74 -52.49 -0.30 3.56 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -35.27 378.42 -9.46 -44.73 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.56 Total: 10.17 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -4.56 Total: -12.61 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.83 Total: -41.92 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.16 Total: -19.82 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.27 -9.46 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095394929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.211 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds