Wall clock time and date at job start Tue Mar 31 2020 06:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48503 * 109.46635 * 90.00274 * 3 2 1 5 5 H 1.48497 * 109.47192 * 330.00446 * 3 2 1 6 6 H 1.48496 * 109.47305 * 209.99767 * 3 2 1 7 7 C 1.37876 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00508 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99783 * 180.02562 * 7 2 1 10 10 N 1.46909 * 109.47165 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00130 * 174.54297 * 10 9 7 12 12 C 1.50698 * 109.47272 * 192.61090 * 11 10 9 13 13 C 1.38219 * 120.00124 * 252.29564 * 12 11 10 14 14 C 1.38329 * 120.00009 * 179.77159 * 13 12 11 15 15 Cl 1.73603 * 120.00221 * 180.25368 * 14 13 12 16 16 C 1.38374 * 120.00191 * 0.49920 * 14 13 12 17 17 C 1.38182 * 119.99843 * 359.77514 * 16 14 13 18 18 C 1.38330 * 119.99754 * 72.56981 * 12 11 10 19 19 Cl 1.73596 * 120.00247 * 359.97438 * 18 12 11 20 20 C 1.46899 * 110.99794 * 298.50167 * 10 9 7 21 21 C 1.53002 * 109.47092 * 293.68279 * 20 10 9 22 22 H 1.09000 * 110.43451 * 314.31987 * 21 20 10 23 23 C 1.54808 * 110.48964 * 191.63386 * 21 20 10 24 24 C 1.54990 * 102.09385 * 220.44633 * 23 21 20 25 25 O 1.44378 * 103.49031 * 37.02131 * 24 23 21 26 26 C 1.43743 * 106.97766 * 319.93843 * 25 24 23 27 27 H 0.96997 * 119.99731 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46983 * 299.99327 * 9 7 2 29 29 H 1.09001 * 109.47568 * 59.99730 * 9 7 2 30 30 H 1.09001 * 109.47376 * 312.61402 * 11 10 9 31 31 H 1.09002 * 109.46444 * 72.61224 * 11 10 9 32 32 H 1.08007 * 120.00180 * 0.02562 * 13 12 11 33 33 H 1.08000 * 120.00747 * 179.74371 * 16 14 13 34 34 H 1.08000 * 120.00349 * 179.97438 * 17 16 14 35 35 H 1.08995 * 109.47182 * 53.68702 * 20 10 9 36 36 H 1.08997 * 109.47019 * 173.68590 * 20 10 9 37 37 H 1.09004 * 110.90663 * 338.64157 * 23 21 20 38 38 H 1.08997 * 110.90924 * 102.24269 * 23 21 20 39 39 H 1.08997 * 110.61598 * 278.52115 * 24 23 21 40 40 H 1.08996 * 110.75417 * 155.59047 * 24 23 21 41 41 H 1.09003 * 109.88198 * 267.09326 * 26 25 24 42 42 H 1.08999 * 109.88137 * 145.93783 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 1.4467 2.6527 -0.6999 6 1 3.5468 1.4402 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 5.4639 -2.6204 -0.1299 12 6 5.9015 -4.0295 -0.4362 13 6 6.5423 -4.7800 0.5316 14 6 6.9397 -6.0751 0.2519 15 17 7.7387 -7.0200 1.4696 16 6 6.7050 -6.6158 -1.0000 17 6 6.0695 -5.8637 -1.9693 18 6 5.6669 -4.5700 -1.6878 19 17 4.8678 -3.6252 -2.9054 20 6 3.5592 -3.2938 1.2048 21 6 4.2263 -2.6782 2.4365 22 1 5.2893 -2.5202 2.2545 23 6 4.0141 -3.5812 3.6759 24 6 3.7345 -2.5417 4.7910 25 8 2.9605 -1.5257 4.1179 26 6 3.5405 -1.3509 2.8144 27 1 -0.4849 0.8400 0.0004 28 1 3.8752 -0.6797 -0.8895 29 1 3.8746 -0.6808 0.8905 30 1 5.7757 -1.9592 -0.9385 31 1 5.9208 -2.2929 0.8039 32 1 6.7291 -4.3566 1.5075 33 1 7.0190 -7.6256 -1.2197 34 1 5.8866 -6.2855 -2.9466 35 1 2.4764 -3.2122 1.2990 36 1 3.8389 -4.3444 1.1272 37 1 3.1575 -4.2403 3.5349 38 1 4.9134 -4.1562 3.8967 39 1 4.6677 -2.1251 5.1701 40 1 3.1586 -2.9895 5.6008 41 1 4.2770 -0.5477 2.8410 42 1 2.7605 -1.1173 2.0898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095401480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:10 Heat of formation + Delta-G solvation = -17.060167 kcal Electronic energy + Delta-G solvation = -26414.469093 eV Core-core repulsion = 22639.655955 eV Total energy + Delta-G solvation = -3774.813138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.085 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.01295 -39.12025 -37.00973 -36.55155 -36.03240 -32.89166 -32.25272 -31.34997 -30.53508 -28.74211 -28.04541 -26.17936 -24.00840 -22.89729 -22.19881 -21.52281 -20.81352 -19.31663 -17.22820 -16.84492 -16.43985 -15.98276 -15.81294 -15.62225 -14.93364 -14.60067 -14.46322 -14.19274 -13.91420 -13.64825 -13.40088 -13.04006 -12.72954 -12.53746 -12.32696 -12.08837 -12.03988 -11.72505 -11.40704 -11.25149 -11.18573 -11.02694 -10.92400 -10.90470 -10.70254 -10.62651 -10.49668 -10.27638 -10.06352 -9.82878 -9.33026 -9.11357 -9.08888 -8.59873 -8.53890 -7.41199 -6.09882 -4.07666 0.89260 1.05326 1.90155 2.36421 3.25978 3.33371 3.34554 3.36099 4.37148 4.39884 4.49902 4.59487 4.71879 4.95009 4.99579 5.06862 5.16083 5.22190 5.26267 5.31079 5.47930 5.48671 5.61322 5.67792 5.83735 5.86931 5.90098 5.95166 5.98868 6.02996 6.15527 6.22057 6.28768 6.32130 6.47380 6.66059 6.79410 6.90915 6.95576 7.40020 7.52218 7.79494 7.93296 8.58117 8.99723 9.50456 11.02522 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.010904 B = 0.004663 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.300287 B = 6003.854722 C = 8021.573845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.863 3.137 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.509 4.509 8 H 0.083 0.917 9 C 0.150 3.850 10 N -0.508 5.508 11 C 0.078 3.922 12 C -0.045 4.045 13 C -0.096 4.096 14 C -0.035 4.035 15 Cl -0.073 7.073 16 C -0.106 4.106 17 C -0.104 4.104 18 C -0.009 4.009 19 Cl -0.038 7.038 20 C 0.071 3.929 21 C -0.156 4.156 22 H 0.074 0.926 23 C -0.144 4.144 24 C 0.044 3.956 25 O -0.377 6.377 26 C 0.028 3.972 27 H 0.265 0.735 28 H 0.029 0.971 29 H -0.003 1.003 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.670 -11.879 1.292 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.690 3.310 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.547 4.547 8 H 0.101 0.899 9 C 0.024 3.976 10 N -0.230 5.230 11 C -0.050 4.050 12 C -0.047 4.047 13 C -0.115 4.115 14 C -0.062 4.062 15 Cl -0.044 7.044 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.037 4.037 19 Cl -0.009 7.009 20 C -0.058 4.058 21 C -0.176 4.176 22 H 0.092 0.908 23 C -0.182 4.182 24 C -0.033 4.033 25 O -0.296 6.296 26 C -0.047 4.047 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.014 0.986 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.100 -11.841 0.931 19.211 hybrid contribution 1.083 1.197 0.671 1.748 sum 16.183 -10.644 1.601 19.436 Atomic orbital electron populations 1.69873 1.06102 1.26940 1.50044 1.24856 0.94644 0.98582 0.94627 0.87049 0.80589 0.84573 0.78789 1.19955 1.21076 1.19042 1.20920 0.88369 0.94737 1.50692 0.89865 1.20513 0.97280 0.84101 0.95701 1.62221 1.05620 1.18246 1.36905 1.21186 0.91743 0.91065 1.01022 1.19779 0.96184 0.97324 0.91367 1.20908 0.98696 0.92160 0.99777 1.20879 1.01263 0.93086 0.90941 1.98368 1.78528 1.72333 1.55147 1.20913 0.99855 1.00510 0.91274 1.21014 0.98706 0.92421 1.00164 1.20916 0.98264 0.93021 0.91474 1.98420 1.77693 1.71727 1.53021 1.22219 1.01947 0.96089 0.85521 1.23256 1.00544 0.96470 0.97377 0.90826 1.23099 1.02082 0.98269 0.94795 1.23448 0.95504 0.88777 0.95599 1.88929 1.54105 1.58386 1.28184 1.24163 1.00166 0.94944 0.85445 0.92528 0.95321 0.98567 0.89589 0.93661 0.84636 0.84492 0.84248 0.88436 0.92373 0.90332 0.91135 0.93294 0.89757 0.94270 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.86 20.66 27.47 -169.99 -4.67 15.99 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.51 -13.31 7.19 -34.44 -0.25 -13.56 16 8 H 0.08 2.41 7.06 -52.49 -0.37 2.04 16 9 C 0.15 3.27 3.22 -4.97 -0.02 3.26 16 10 N -0.51 -9.39 4.45 -237.51 -1.06 -10.45 16 11 C 0.08 1.19 4.22 -4.98 -0.02 1.17 16 12 C -0.04 -0.61 4.48 -104.60 -0.47 -1.07 16 13 C -0.10 -1.14 9.20 -39.55 -0.36 -1.50 16 14 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 15 Cl -0.07 -0.73 28.96 -51.86 -1.50 -2.23 16 16 C -0.11 -1.07 9.83 -39.55 -0.39 -1.46 16 17 C -0.10 -1.14 9.83 -39.55 -0.39 -1.53 16 18 C -0.01 -0.12 6.31 -39.49 -0.25 -0.37 16 19 Cl -0.04 -0.57 27.48 -51.86 -1.43 -1.99 16 20 C 0.07 1.24 4.50 -3.82 -0.02 1.22 16 21 C -0.16 -2.47 2.79 -89.09 -0.25 -2.72 16 22 H 0.07 1.07 5.61 -51.93 -0.29 0.78 16 23 C -0.14 -1.96 6.69 -24.73 -0.17 -2.13 16 24 C 0.04 0.63 7.72 38.21 0.29 0.93 16 25 O -0.38 -7.36 11.52 -35.23 -0.41 -7.76 16 26 C 0.03 0.54 5.40 37.73 0.20 0.75 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.66 7.05 -51.93 -0.37 0.29 16 29 H 0.00 -0.07 4.13 -51.93 -0.21 -0.28 16 30 H 0.09 1.34 7.50 -51.93 -0.39 0.95 16 31 H 0.05 0.65 5.36 -51.93 -0.28 0.37 16 32 H 0.14 1.48 7.98 -52.48 -0.42 1.06 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.10 2.02 6.20 -51.93 -0.32 1.70 16 36 H 0.06 0.94 7.21 -51.93 -0.37 0.57 16 37 H 0.08 1.09 7.87 -51.93 -0.41 0.68 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 42 H 0.14 3.22 4.08 -51.93 -0.21 3.00 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -28.70 354.54 -10.70 -39.40 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.34 Total: 2.96 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -2.42 Total: -15.68 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.28 Total: -36.04 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.41 Total: -7.76 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -2.93 Total: -4.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.70 -10.70 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095401480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.338 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds