Wall clock time and date at job start Tue Mar 31 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00487 * 2 1 4 4 H 1.48493 * 109.47183 * 270.00520 * 3 2 1 5 5 H 1.48503 * 109.46776 * 30.00268 * 3 2 1 6 6 H 1.48497 * 109.47312 * 149.99760 * 3 2 1 7 7 C 1.37880 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00454 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99761 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.47069 * 178.64232 * 9 7 2 11 11 C 1.46897 * 111.00112 * 164.01397 * 10 9 7 12 12 C 1.50701 * 109.46805 * 293.95090 * 11 10 9 13 13 C 1.38218 * 120.00367 * 105.00015 * 12 11 10 14 14 C 1.38328 * 120.00281 * 179.97438 * 13 12 11 15 15 Cl 1.73602 * 120.00086 * 179.72777 * 14 13 12 16 16 C 1.38376 * 120.00017 * 359.97438 * 14 13 12 17 17 C 1.38177 * 120.00233 * 0.02562 * 16 14 13 18 18 C 1.38340 * 119.99882 * 284.97703 * 12 11 10 19 19 Cl 1.73595 * 119.99853 * 0.02562 * 18 12 11 20 20 C 1.46907 * 110.99776 * 287.96510 * 10 9 7 21 21 C 1.52999 * 109.47107 * 160.05139 * 20 10 9 22 22 H 1.09000 * 110.45552 * 52.01094 * 21 20 10 23 23 C 1.54509 * 110.50912 * 174.61135 * 21 20 10 24 24 C 1.54483 * 104.06175 * 118.64661 * 23 21 20 25 25 O 1.44425 * 104.80158 * 23.97711 * 24 23 21 26 26 C 1.44651 * 105.37150 * 319.56591 * 25 24 23 27 27 H 0.97004 * 120.00092 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47058 * 58.64117 * 9 7 2 29 29 H 1.09003 * 109.46735 * 298.63526 * 9 7 2 30 30 H 1.08997 * 109.47176 * 173.95114 * 11 10 9 31 31 H 1.08993 * 109.47304 * 53.94677 * 11 10 9 32 32 H 1.08008 * 119.99450 * 0.02562 * 13 12 11 33 33 H 1.08002 * 120.00078 * 179.97438 * 16 14 13 34 34 H 1.07997 * 120.00178 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.46575 * 280.05285 * 20 10 9 36 36 H 1.09005 * 109.46734 * 40.05190 * 20 10 9 37 37 H 1.09000 * 110.51429 * 237.28779 * 23 21 20 38 38 H 1.09003 * 110.51271 * 359.87012 * 23 21 20 39 39 H 1.08991 * 110.37428 * 142.80854 * 24 23 21 40 40 H 1.09003 * 110.37222 * 265.14961 * 24 23 21 41 41 H 1.08993 * 110.33734 * 281.59465 * 26 25 24 42 42 H 1.08998 * 110.50503 * 159.18217 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5789 0.0321 11 6 5.4196 -2.6445 -0.3436 12 6 5.5759 -2.2424 -1.7875 13 6 6.0897 -0.9997 -2.1072 14 6 6.2337 -0.6308 -3.4326 15 17 6.8724 0.9327 -3.8340 16 6 5.8637 -1.5061 -4.4385 17 6 5.3500 -2.7484 -4.1190 18 6 5.2055 -3.1172 -2.7931 19 17 4.5601 -4.6779 -2.3917 20 6 3.7772 -3.1860 1.3510 21 6 3.8215 -4.7101 1.2250 22 1 4.7331 -5.0240 0.7166 23 6 3.7233 -5.3715 2.6179 24 6 2.4283 -6.2106 2.5446 25 8 2.2329 -6.4653 1.1365 26 6 2.5760 -5.2273 0.4716 27 1 -0.4850 0.8401 0.0004 28 1 3.8744 -0.6600 0.8781 29 1 3.8751 -0.7011 -0.9015 30 1 5.7846 -3.6626 -0.2084 31 1 5.9942 -1.9659 0.2867 32 1 6.3796 -0.3170 -1.3221 33 1 5.9757 -1.2179 -5.4733 34 1 5.0617 -3.4317 -4.9041 35 1 4.5547 -2.8555 2.0397 36 1 2.8019 -2.8809 1.7305 37 1 4.5852 -6.0143 2.7971 38 1 3.6455 -4.6126 3.3965 39 1 2.5525 -7.1482 3.0862 40 1 1.5874 -5.6466 2.9484 41 1 1.7575 -4.5126 0.5560 42 1 2.8150 -5.4101 -0.5760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095401481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:13 Heat of formation + Delta-G solvation = -31.697823 kcal Electronic energy + Delta-G solvation = -26154.493972 eV Core-core repulsion = 22379.046098 eV Total energy + Delta-G solvation = -3775.447874 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.085 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.70100 -39.05296 -36.93949 -36.46634 -35.98166 -32.76135 -32.59843 -31.18186 -30.44260 -29.09420 -27.84011 -25.85019 -23.79417 -22.77648 -22.41022 -21.75932 -20.35093 -19.62676 -17.16283 -16.86847 -16.27080 -15.93911 -15.75912 -15.49354 -14.88053 -14.65636 -14.29294 -14.26469 -13.89784 -13.52317 -13.39346 -13.12859 -12.65067 -12.51610 -12.37398 -12.24216 -12.03090 -11.78059 -11.50826 -11.35720 -11.20627 -10.99033 -10.92488 -10.81659 -10.65862 -10.60945 -10.46653 -10.26645 -10.02837 -9.92740 -9.44212 -9.28337 -8.93488 -8.58083 -8.42282 -7.49482 -6.07373 -4.04248 1.03276 1.19830 2.04791 2.38540 3.25787 3.32480 3.34444 3.48709 4.32364 4.38987 4.51949 4.72374 4.73451 4.99451 5.06915 5.09277 5.22659 5.24742 5.31588 5.39814 5.43065 5.54391 5.65008 5.75974 5.85994 5.88726 5.94146 5.99614 6.01199 6.07433 6.13135 6.20955 6.26356 6.35707 6.46463 6.60165 6.63694 6.80114 6.85049 7.15997 7.55577 7.79716 7.91142 8.61252 9.02592 9.54587 11.05578 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.008785 B = 0.005243 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.447975 B = 5339.605063 C = 7496.596352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.504 4.504 8 H 0.082 0.918 9 C 0.160 3.840 10 N -0.514 5.514 11 C 0.086 3.914 12 C -0.043 4.043 13 C -0.093 4.093 14 C -0.033 4.033 15 Cl -0.072 7.072 16 C -0.104 4.104 17 C -0.103 4.103 18 C -0.005 4.005 19 Cl -0.048 7.048 20 C 0.071 3.929 21 C -0.112 4.112 22 H 0.075 0.925 23 C -0.152 4.152 24 C 0.047 3.953 25 O -0.388 6.388 26 C 0.062 3.938 27 H 0.263 0.737 28 H -0.011 1.011 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.026 0.974 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.009 -6.946 -2.752 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.542 4.542 8 H 0.100 0.900 9 C 0.034 3.966 10 N -0.237 5.237 11 C -0.042 4.042 12 C -0.045 4.045 13 C -0.112 4.112 14 C -0.060 4.060 15 Cl -0.044 7.044 16 C -0.123 4.123 17 C -0.122 4.122 18 C -0.032 4.032 19 Cl -0.019 7.019 20 C -0.057 4.057 21 C -0.131 4.131 22 H 0.094 0.906 23 C -0.190 4.190 24 C -0.030 4.030 25 O -0.308 6.308 26 C -0.014 4.014 27 H 0.073 0.927 28 H 0.007 0.993 29 H 0.044 0.956 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.044 0.956 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.496 -7.279 -3.182 15.660 hybrid contribution 0.880 1.875 0.590 2.154 sum 14.376 -5.404 -2.592 15.575 Atomic orbital electron populations 1.69884 1.06040 1.26740 1.51024 1.24854 0.94645 0.98590 0.94957 0.86999 0.80371 0.84535 0.78739 1.20057 1.21233 1.19302 1.20969 0.88494 0.94637 1.50144 0.89987 1.20258 0.97351 0.83782 0.95253 1.61942 1.12363 1.21766 1.27634 1.21104 0.92187 1.00949 0.89982 1.19628 0.96551 0.92314 0.95981 1.20924 0.99607 0.95871 0.94834 1.20873 1.02730 0.87893 0.94481 1.98364 1.85136 1.26713 1.94146 1.20899 0.99566 0.92839 0.99037 1.20964 0.99786 0.96531 0.94879 1.20789 0.99671 0.89172 0.93611 1.98369 1.84509 1.24873 1.94162 1.22107 1.02240 0.91753 0.89611 1.22500 0.99634 0.96144 0.94821 0.90628 1.22975 0.98484 0.99502 0.98036 1.23321 0.96403 0.99315 0.84007 1.89089 1.89283 1.34590 1.17797 1.23493 0.95936 0.85076 0.96882 0.92699 0.99341 0.95580 0.89842 0.94450 0.84566 0.84427 0.84224 0.95627 0.88790 0.91286 0.90521 0.89945 0.92348 0.90938 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.12 27.49 -169.99 -4.67 16.45 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.25 6.50 56.52 0.37 -5.88 16 7 C -0.50 -13.56 8.88 -34.44 -0.31 -13.86 16 8 H 0.08 2.41 7.98 -52.49 -0.42 1.99 16 9 C 0.16 3.58 3.66 -4.97 -0.02 3.56 16 10 N -0.51 -9.49 4.16 -237.51 -0.99 -10.48 16 11 C 0.09 1.32 4.25 -4.98 -0.02 1.30 16 12 C -0.04 -0.66 4.48 -104.59 -0.47 -1.13 16 13 C -0.09 -1.38 8.45 -39.56 -0.33 -1.71 16 14 C -0.03 -0.46 6.32 -39.50 -0.25 -0.71 16 15 Cl -0.07 -0.94 28.96 -51.86 -1.50 -2.44 16 16 C -0.10 -1.30 9.83 -39.55 -0.39 -1.69 16 17 C -0.10 -1.31 9.83 -39.55 -0.39 -1.70 16 18 C 0.00 -0.07 6.31 -39.49 -0.25 -0.32 16 19 Cl -0.05 -0.70 26.13 -51.86 -1.35 -2.05 16 20 C 0.07 1.20 3.98 -3.82 -0.02 1.18 16 21 C -0.11 -1.65 3.18 -89.05 -0.28 -1.93 16 22 H 0.08 1.07 6.69 -51.93 -0.35 0.73 16 23 C -0.15 -1.90 6.74 -25.16 -0.17 -2.07 16 24 C 0.05 0.62 7.64 37.94 0.29 0.91 16 25 O -0.39 -6.49 11.65 -35.23 -0.41 -6.90 16 26 C 0.06 1.05 7.10 37.93 0.27 1.32 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H -0.01 -0.25 7.02 -51.93 -0.36 -0.62 16 29 H 0.03 0.60 5.63 -51.93 -0.29 0.31 16 30 H 0.08 1.16 6.03 -51.93 -0.31 0.85 16 31 H 0.04 0.55 7.93 -51.93 -0.41 0.14 16 32 H 0.14 1.93 8.00 -52.48 -0.42 1.51 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16 36 H 0.09 1.84 6.89 -51.93 -0.36 1.48 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.90 7.73 -51.93 -0.40 0.50 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.40 7.74 -51.93 -0.40 1.00 16 42 H 0.09 1.52 6.65 -51.93 -0.35 1.17 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -29.59 364.33 -10.87 -40.46 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.77 Total: 0.56 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.43 Total: -14.95 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.22 Total: -36.63 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.41 Total: -6.90 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -2.86 Total: -4.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.59 -10.87 -40.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095401481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.764 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds