Wall clock time and date at job start Tue Mar 31 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47482 * 2 1 4 4 C 1.53003 * 109.47039 * 239.99954 * 2 1 3 5 5 C 1.50702 * 109.47125 * 59.99846 * 4 2 1 6 6 H 1.08002 * 119.99885 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00017 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99935 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46981 * 60.00463 * 9 7 5 11 11 H 1.48502 * 109.47255 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47469 * 300.00459 * 9 7 5 13 13 C 1.53007 * 109.47508 * 120.00005 * 2 1 3 14 14 N 1.46503 * 109.46878 * 299.99868 * 13 2 1 15 15 C 1.39664 * 119.99939 * 179.97438 * 14 13 2 16 16 C 1.38992 * 120.04002 * 0.02562 * 15 14 13 17 17 C 1.38126 * 120.06894 * 179.97438 * 16 15 14 18 18 C 1.38176 * 120.14910 * 0.02562 * 17 16 15 19 19 C 1.38925 * 120.07501 * 0.23638 * 18 17 16 20 20 N 1.39862 * 120.03409 * 179.72199 * 19 18 17 21 21 C 1.34771 * 120.00238 * 33.37066 * 20 19 18 22 22 O 1.21629 * 120.00113 * 5.27811 * 21 20 19 23 23 C 1.47352 * 120.00308 * 185.27467 * 21 20 19 24 24 C 1.47027 * 127.19385 * 179.97438 * 23 21 20 25 25 C 1.34176 * 105.95295 * 180.02562 * 24 23 21 26 26 O 1.34215 * 109.13085 * 359.97438 * 25 24 23 27 27 C 1.33661 * 110.90759 * 359.72988 * 26 25 24 28 28 C 1.38763 * 120.03885 * 179.97438 * 15 14 13 29 29 H 1.09003 * 109.46864 * 299.99938 * 1 2 3 30 30 H 1.08993 * 109.47225 * 59.99846 * 1 2 3 31 31 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.48036 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46906 * 300.00224 * 3 2 1 34 34 H 1.08998 * 109.47185 * 59.99710 * 3 2 1 35 35 H 1.09002 * 109.47218 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.46905 * 299.99813 * 4 2 1 37 37 H 0.97004 * 119.99495 * 179.97438 * 8 7 5 38 38 H 1.08993 * 109.47156 * 180.02562 * 13 2 1 39 39 H 1.08998 * 109.46714 * 59.99757 * 13 2 1 40 40 H 0.97004 * 120.00123 * 359.97438 * 14 13 2 41 41 H 1.08004 * 119.96645 * 359.94542 * 16 15 14 42 42 H 1.08008 * 119.92743 * 179.97438 * 17 16 15 43 43 H 1.08002 * 119.96324 * 179.97438 * 18 17 16 44 44 H 0.97001 * 119.99599 * 213.36862 * 20 19 18 45 45 H 1.07992 * 127.02334 * 0.03779 * 24 23 21 46 46 H 1.07998 * 125.43451 * 180.02562 * 25 24 23 47 47 H 1.07998 * 125.80543 * 180.28513 * 27 26 25 48 48 H 1.07994 * 120.07293 * 0.04760 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5509 -3.8526 9 14 1.2478 0.3985 -5.2572 10 1 1.7418 1.7990 -5.2571 11 1 1.7428 -0.3015 -6.4697 12 1 -0.2373 0.3975 -5.2572 13 6 2.0401 -0.7213 1.2493 14 7 1.5518 -0.0306 2.4454 15 6 1.8888 -0.5080 3.7139 16 6 2.6879 -1.6380 3.8424 17 6 3.0220 -2.1104 5.0967 18 6 2.5630 -1.4622 6.2273 19 6 1.7595 -0.3354 6.1060 20 7 1.2907 0.3167 7.2510 21 6 2.0496 0.3533 8.3641 22 8 3.1798 -0.0959 8.3446 23 6 1.5104 0.9375 9.6048 24 6 2.1941 1.0580 10.9008 25 6 1.3174 1.6495 11.7266 26 8 0.1802 1.8956 11.0577 27 6 0.2745 1.4852 9.7892 28 6 1.4272 0.1458 4.8475 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 -0.7217 -1.2491 36 1 1.6766 -1.7489 -1.2492 37 1 2.8615 -1.8823 -4.7337 38 1 3.1300 -0.7208 1.2494 39 1 1.6767 -1.7489 1.2492 40 1 0.9944 0.7583 2.3565 41 1 3.0475 -2.1475 2.9607 42 1 3.6427 -2.9889 5.1939 43 1 2.8258 -1.8344 7.2066 44 1 0.4192 0.7426 7.2440 45 1 3.1970 0.7363 11.1393 46 1 1.4984 1.8900 12.7638 47 1 -0.4974 1.5698 9.0387 48 1 0.8062 1.0241 4.7505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095428901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:58 Heat of formation + Delta-G solvation = -1.229206 kcal Electronic energy + Delta-G solvation = -28169.642725 eV Core-core repulsion = 24190.791511 eV Total energy + Delta-G solvation = -3978.851214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.02611 -40.50034 -38.91903 -37.38921 -35.21360 -33.89590 -33.23355 -32.24535 -30.75001 -29.77632 -28.52755 -26.96773 -26.51226 -25.84445 -24.52214 -22.92398 -22.56586 -21.97059 -21.41871 -20.06862 -19.03546 -18.20281 -17.56339 -16.74584 -16.63406 -16.35948 -16.00562 -15.67192 -15.40254 -15.03518 -14.83833 -14.46296 -14.36989 -13.91725 -13.53483 -13.45702 -13.37536 -13.09013 -13.00267 -12.87100 -12.77790 -12.26285 -12.07309 -11.69628 -11.33200 -11.18904 -11.02248 -10.88148 -10.67978 -10.56446 -10.37454 -10.32234 -10.27222 -10.21316 -9.90079 -9.54876 -9.33252 -9.21915 -8.95945 -8.37886 -8.26705 -7.14222 -6.02325 -4.03496 0.78182 1.42076 1.67007 1.81958 2.41060 2.72648 2.99787 3.30494 3.35945 3.37224 3.77099 4.01719 4.09236 4.16671 4.43583 4.54621 4.95963 5.04259 5.17708 5.33266 5.33575 5.38471 5.42021 5.44021 5.58634 5.59490 5.69608 5.74420 5.77772 5.81654 6.16612 6.17376 6.21526 6.28655 6.37619 6.38522 6.44387 6.47756 6.62276 6.64302 6.75213 6.97915 7.04272 7.06009 7.10711 7.17344 7.59134 7.60208 7.73166 7.84307 7.96179 7.99884 8.38698 9.00867 9.59717 11.09049 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.028893 B = 0.001688 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.857978 B =16582.407221 C =17223.936296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.132 3.868 14 N -0.736 5.736 15 C 0.244 3.756 16 C -0.209 4.209 17 C -0.053 4.053 18 C -0.186 4.186 19 C 0.187 3.813 20 N -0.669 5.669 21 C 0.585 3.415 22 O -0.510 6.510 23 C -0.235 4.235 24 C -0.163 4.163 25 C -0.039 4.039 26 O -0.173 6.173 27 C 0.023 3.977 28 C -0.230 4.230 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.397 0.603 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.405 0.595 45 H 0.161 0.839 46 H 0.210 0.790 47 H 0.212 0.788 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 5.251 29.114 30.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.008 3.992 14 N -0.364 5.364 15 C 0.137 3.863 16 C -0.232 4.232 17 C -0.073 4.073 18 C -0.209 4.209 19 C 0.093 3.907 20 N -0.313 5.313 21 C 0.374 3.626 22 O -0.385 6.385 23 C -0.239 4.239 24 C -0.183 4.183 25 C -0.105 4.105 26 O -0.068 6.068 27 C -0.048 4.048 28 C -0.256 4.256 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.233 0.767 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.241 0.759 45 H 0.179 0.821 46 H 0.227 0.773 47 H 0.228 0.772 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.764 4.842 28.969 29.755 hybrid contribution -0.747 0.877 -1.091 1.586 sum -5.511 5.719 27.878 28.987 Atomic orbital electron populations 1.21737 0.95314 1.01067 1.00156 1.20866 0.95451 0.95855 0.94982 1.21742 1.00475 0.95950 1.00159 1.19086 0.96269 0.95162 0.89563 1.21147 1.31251 1.12090 0.90562 0.92359 1.25006 0.95294 0.95087 0.99074 1.69952 1.36894 1.23003 1.23552 0.86707 0.79141 0.79775 0.82646 1.20336 1.21375 1.20340 1.21609 0.98212 0.95770 0.83590 1.45019 1.56525 1.32584 1.02254 1.17565 0.91745 0.91891 0.85115 1.20736 1.05172 0.99160 0.98159 1.20740 0.96905 0.98201 0.91427 1.20751 1.04153 0.96567 0.99390 1.17262 0.97077 0.91771 0.84574 1.43283 1.20976 1.55831 1.11209 1.17313 0.84857 0.78524 0.81892 1.90835 1.17821 1.45760 1.84120 1.21478 0.96219 1.10297 0.95944 1.22809 1.01513 1.03084 0.90870 1.23998 0.83776 1.03923 0.98808 1.83810 1.37425 1.64282 1.21289 1.24485 0.98047 0.97359 0.84886 1.20107 1.11395 1.04027 0.90061 0.95223 0.91597 0.93445 0.93433 0.91598 0.95210 0.96414 0.96417 0.92987 0.92526 0.92504 0.76681 0.85796 0.86031 0.85663 0.75936 0.82103 0.77298 0.77159 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.48 7.65 -34.44 -0.26 -13.74 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 C 0.13 2.16 3.80 -4.04 -0.02 2.14 16 14 N -0.74 -10.38 5.13 -58.65 -0.30 -10.68 16 15 C 0.24 3.40 6.65 -83.82 -0.56 2.84 16 16 C -0.21 -2.94 9.31 -39.34 -0.37 -3.31 16 17 C -0.05 -0.70 10.03 -39.65 -0.40 -1.10 16 18 C -0.19 -2.54 8.65 -39.35 -0.34 -2.88 16 19 C 0.19 2.33 6.27 -83.74 -0.53 1.80 16 20 N -0.67 -6.39 5.32 -10.87 -0.06 -6.45 16 21 C 0.59 6.59 7.55 -12.56 -0.09 6.49 16 22 O -0.51 -7.71 14.67 5.25 0.08 -7.64 16 23 C -0.23 -2.00 6.31 -103.28 -0.65 -2.65 16 24 C -0.16 -1.24 11.01 -37.45 -0.41 -1.65 16 25 C -0.04 -0.21 12.03 29.30 0.35 0.15 16 26 O -0.17 -1.06 10.52 7.63 0.08 -0.98 16 27 C 0.02 0.13 11.61 30.08 0.35 0.47 16 28 C -0.23 -2.85 9.81 -39.19 -0.38 -3.23 16 29 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 34 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.06 0.96 7.95 -51.93 -0.41 0.55 16 39 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 40 H 0.40 5.20 6.17 -40.82 -0.25 4.94 16 41 H 0.12 1.73 6.73 -52.48 -0.35 1.38 16 42 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.13 1.77 6.41 -52.49 -0.34 1.43 16 44 H 0.41 2.31 7.80 -40.82 -0.32 1.99 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.21 0.30 8.06 -52.49 -0.42 -0.12 16 47 H 0.21 0.30 7.48 -52.49 -0.39 -0.09 16 48 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -33.08 392.85 -8.26 -41.35 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.69 Total: 5.46 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.00 Total: -17.66 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.38 Total: -42.50 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.16 Total: -8.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.08 -8.26 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095428901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.117 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds