Wall clock time and date at job start Tue Mar 31 2020 06:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46886 * 2 1 4 4 C 1.50701 * 109.46909 * 119.99982 * 2 1 3 5 5 H 1.08000 * 119.99913 * 119.99913 * 4 2 1 6 6 C 1.37870 * 120.00134 * 299.99438 * 4 2 1 7 7 N 1.31515 * 120.00137 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00276 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46912 * 89.99996 * 8 6 4 10 10 H 1.48502 * 109.47445 * 210.00432 * 8 6 4 11 11 H 1.48507 * 109.46913 * 330.00518 * 8 6 4 12 12 N 1.46498 * 109.46839 * 239.99828 * 2 1 3 13 13 C 1.46503 * 120.00049 * 300.00106 * 12 2 1 14 14 S 1.65600 * 120.00110 * 120.00056 * 12 2 1 15 15 O 1.42093 * 106.40565 * 156.45909 * 14 12 2 16 16 O 1.42106 * 106.39983 * 23.53725 * 14 12 2 17 17 C 1.76198 * 107.21743 * 270.00220 * 14 12 2 18 18 C 1.39873 * 126.03692 * 269.99653 * 17 14 12 19 19 N 1.30846 * 108.20187 * 179.74476 * 18 17 14 20 20 N 1.40090 * 108.20009 * 0.40121 * 19 18 17 21 21 C 1.46502 * 126.03208 * 179.85614 * 20 19 18 22 22 C 1.53177 * 109.54366 * 264.69248 * 21 20 19 23 23 C 1.53098 * 109.21356 * 183.18424 * 22 21 20 24 24 O 1.42899 * 109.40993 * 57.57693 * 23 22 21 25 25 C 1.42898 * 114.10053 * 298.83671 * 24 23 22 26 26 C 1.53097 * 109.41405 * 61.16391 * 25 24 23 27 27 C 1.34942 * 107.92803 * 359.59444 * 20 19 18 28 28 H 1.09002 * 109.47566 * 59.99708 * 1 2 3 29 29 H 1.09003 * 109.47431 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47312 * 299.99841 * 1 2 3 31 31 H 0.97002 * 120.00214 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.46890 * 269.99582 * 13 12 2 33 33 H 1.09001 * 109.47388 * 30.00016 * 13 12 2 34 34 H 1.09003 * 109.47066 * 150.00210 * 13 12 2 35 35 H 1.08001 * 125.90000 * 359.97438 * 18 17 14 36 36 H 1.09005 * 109.61268 * 24.91256 * 21 20 19 37 37 H 1.09002 * 109.52487 * 63.24635 * 22 21 20 38 38 H 1.09004 * 109.52023 * 303.12255 * 22 21 20 39 39 H 1.08999 * 109.47354 * 177.55660 * 23 22 21 40 40 H 1.08999 * 109.48099 * 297.59428 * 23 22 21 41 41 H 1.09007 * 109.48578 * 181.14563 * 25 24 23 42 42 H 1.09003 * 109.48319 * 301.17106 * 25 24 23 43 43 H 1.09002 * 109.52138 * 62.29619 * 26 25 24 44 44 H 1.09005 * 109.52063 * 182.42027 * 26 25 24 45 45 H 1.08000 * 126.12425 * 180.22194 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5440 4.4118 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 16 2.9703 0.1141 -2.2863 15 8 3.7117 -0.8790 -2.9815 16 8 3.5794 1.1829 -1.5749 17 6 1.8960 0.8534 -3.4710 18 6 1.4541 0.2657 -4.6609 19 7 0.6690 1.1168 -5.2702 20 7 0.5938 2.2783 -4.4906 21 6 -0.1774 3.4822 -4.8100 22 6 0.7292 4.5019 -5.5060 23 6 -0.0628 5.7863 -5.7647 24 8 -0.5680 6.2903 -4.5267 25 6 -1.4603 5.3993 -3.8546 26 6 -0.7245 4.0993 -3.5191 27 6 1.3526 2.0901 -3.3907 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.7089 1.1614 3.4844 32 1 2.4157 -2.7378 -0.9717 33 1 0.6903 -2.3003 -0.9846 34 1 1.6237 -2.2853 -2.5002 35 1 1.7129 -0.7217 -5.0138 36 1 -1.0062 3.2218 -5.4685 37 1 1.0781 4.0920 -6.4538 38 1 1.5848 4.7238 -4.8681 39 1 0.5903 6.5304 -6.2207 40 1 -0.8942 5.5717 -6.4362 41 1 -1.8142 5.8645 -2.9345 42 1 -2.3101 5.1797 -4.5010 43 1 0.1011 4.3128 -2.8402 44 1 -1.4151 3.4018 -3.0449 45 1 1.5001 2.7996 -2.5899 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095432598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:24 Heat of formation + Delta-G solvation = -38.707032 kcal Electronic energy + Delta-G solvation = -29227.856121 eV Core-core repulsion = 25181.564692 eV Total energy + Delta-G solvation = -4046.291429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47372 -39.52236 -36.55041 -36.12228 -35.12424 -35.07511 -32.56204 -31.68936 -30.69596 -30.28194 -29.07318 -25.55314 -25.40071 -25.11542 -24.14227 -22.33451 -21.44264 -20.67007 -20.07528 -18.58811 -17.68471 -16.82014 -16.59971 -16.51837 -16.19828 -15.47578 -15.38514 -15.19708 -15.07283 -14.85705 -14.48314 -13.91346 -13.80729 -13.48632 -13.11629 -13.00488 -12.83371 -12.78279 -12.12778 -11.94075 -11.85197 -11.67063 -11.57701 -11.42386 -11.34612 -11.32633 -11.17956 -10.95055 -10.91162 -10.79606 -10.53597 -10.36839 -10.25892 -10.13986 -9.97301 -9.58625 -9.25543 -9.11938 -8.44650 -7.91907 -6.07122 -4.12932 1.12831 1.62799 2.21571 2.39834 3.30355 3.36762 3.39988 3.41787 3.85424 3.96243 4.17061 4.39415 4.40522 4.47121 4.48682 4.51412 4.66808 4.74894 4.87558 4.97670 5.12129 5.14769 5.22464 5.24884 5.27411 5.43841 5.54034 5.57299 5.65948 5.69462 5.74659 6.20355 6.40835 6.41391 6.65331 6.70970 6.74988 6.77779 6.80841 7.01576 7.44004 7.46709 7.64549 7.79363 8.03919 8.28273 8.89578 9.52847 10.98689 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.003647 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.604327 B = 7675.985459 C = 9006.164422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.982 5.982 13 C 0.109 3.891 14 S 2.714 3.286 15 O -0.977 6.977 16 O -0.960 6.960 17 C -0.808 4.808 18 C 0.131 3.869 19 N -0.300 5.300 20 N -0.360 5.360 21 C 0.157 3.843 22 C -0.170 4.170 23 C 0.067 3.933 24 O -0.379 6.379 25 C 0.068 3.932 26 C -0.175 4.175 27 C 0.181 3.819 28 H 0.007 0.993 29 H 0.034 0.966 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.195 0.805 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 6.936 -15.454 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.822 5.822 13 C -0.037 4.037 14 S 2.801 3.199 15 O -0.967 6.967 16 O -0.951 6.951 17 C -0.904 4.904 18 C -0.058 4.058 19 N -0.118 5.118 20 N -0.138 5.138 21 C 0.055 3.945 22 C -0.209 4.209 23 C -0.011 4.011 24 O -0.297 6.297 25 C -0.009 4.009 26 C -0.214 4.214 27 C 0.029 3.971 28 H 0.026 0.974 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.212 0.788 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.166 7.640 -16.368 19.087 hybrid contribution 0.008 -0.824 1.187 1.446 sum -6.158 6.816 -15.181 17.743 Atomic orbital electron populations 1.22126 0.98466 0.99806 1.00356 1.18739 0.91140 0.93127 0.80508 0.92257 1.21343 1.31423 1.12985 0.89932 0.91819 1.24891 0.94953 0.95029 0.98964 1.69850 1.36674 1.22844 1.23726 0.86503 0.78664 0.80023 0.82265 1.20527 1.21255 1.19849 1.57418 1.70493 1.19563 1.34751 1.21164 1.01670 0.81851 0.99003 1.01246 0.73420 0.73133 0.72116 1.93488 1.68575 1.59425 1.75219 1.93551 1.73617 1.56287 1.71596 1.32143 1.31319 1.07426 1.19538 1.23483 0.92413 0.98963 0.90940 1.77330 1.22765 0.93177 1.18540 1.49253 1.36019 1.12639 1.15907 1.21394 0.93790 0.81125 0.98174 1.22722 0.99796 0.95766 1.02607 1.22566 0.97342 0.94914 0.86268 1.87994 1.63724 1.42599 1.35377 1.22567 0.91229 0.88979 0.98122 1.22734 1.02932 0.98873 0.96816 1.22409 0.88238 0.95987 0.90467 0.97373 0.94699 0.88879 0.92759 0.93082 0.91062 0.93107 0.78823 0.87558 0.89649 0.89838 0.87917 0.92599 0.87451 0.92528 0.89244 0.89004 0.79431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.95 37.16 0.33 -2.94 16 2 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -13.67 8.37 -34.44 -0.29 -13.96 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.22 11.32 55.43 0.63 -23.60 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.98 -20.13 3.06 -115.85 -0.35 -20.48 16 13 C 0.11 1.93 9.53 59.85 0.57 2.50 16 14 S 2.71 53.17 5.78 -107.50 -0.62 52.55 16 15 O -0.98 -20.00 16.94 -57.17 -0.97 -20.97 16 16 O -0.96 -21.74 16.41 -57.17 -0.94 -22.67 16 17 C -0.81 -13.33 6.17 -40.01 -0.25 -13.58 16 18 C 0.13 1.97 11.82 -17.36 -0.21 1.77 16 19 N -0.30 -4.46 12.58 30.63 0.39 -4.07 16 20 N -0.36 -4.83 3.54 -54.68 -0.19 -5.02 16 21 C 0.16 1.54 3.30 -67.74 -0.22 1.32 16 22 C -0.17 -1.46 5.74 -26.59 -0.15 -1.61 16 23 C 0.07 0.47 6.84 37.21 0.25 0.72 16 24 O -0.38 -3.44 10.76 -35.23 -0.38 -3.82 16 25 C 0.07 0.51 6.84 37.21 0.25 0.76 16 26 C -0.17 -1.55 5.13 -26.59 -0.14 -1.69 16 27 C 0.18 2.71 10.33 -17.23 -0.18 2.53 16 28 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 30 H 0.09 2.27 6.07 -51.92 -0.32 1.96 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 35 H 0.20 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.86 7.01 -51.93 -0.36 0.50 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.19 2.54 7.18 -52.49 -0.38 2.16 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -33.17 375.68 -8.78 -41.96 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.69 Total: 1.02 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.29 Total: -16.38 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.46 Total: -53.17 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -2.29 Total: -47.47 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 53.17 SS G_CDS: -0.62 Total: 52.55 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.17 -8.78 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095432598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.250 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds