Wall clock time and date at job start Tue Mar 31 2020 06:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47343 * 2 1 4 4 C 1.50696 * 109.47155 * 239.99847 * 2 1 3 5 5 H 1.07998 * 120.00353 * 240.00136 * 4 2 1 6 6 C 1.37879 * 119.99945 * 60.00094 * 4 2 1 7 7 N 1.31513 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99869 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47132 * 90.00083 * 8 6 4 10 10 H 1.48504 * 109.46849 * 209.99611 * 8 6 4 11 11 H 1.48499 * 109.47314 * 329.99769 * 8 6 4 12 12 N 1.46503 * 109.47241 * 119.99915 * 2 1 3 13 13 C 1.46498 * 120.00049 * 59.99908 * 12 2 1 14 14 S 1.65600 * 119.99841 * 239.99958 * 12 2 1 15 15 O 1.42093 * 106.40565 * 336.45859 * 14 12 2 16 16 O 1.42106 * 106.39983 * 203.53675 * 14 12 2 17 17 C 1.76198 * 107.21743 * 90.00171 * 14 12 2 18 18 C 1.39873 * 126.03692 * 269.99653 * 17 14 12 19 19 N 1.30846 * 108.20187 * 179.74476 * 18 17 14 20 20 N 1.40090 * 108.20009 * 0.40121 * 19 18 17 21 21 C 1.46502 * 126.03208 * 179.85614 * 20 19 18 22 22 C 1.53177 * 109.54366 * 264.69248 * 21 20 19 23 23 C 1.53098 * 109.21356 * 183.18424 * 22 21 20 24 24 O 1.42899 * 109.40993 * 57.57693 * 23 22 21 25 25 C 1.42898 * 114.10053 * 298.83671 * 24 23 22 26 26 C 1.53097 * 109.41405 * 61.16391 * 25 24 23 27 27 C 1.34942 * 107.92803 * 359.59444 * 20 19 18 28 28 H 1.09001 * 109.47265 * 59.99984 * 1 2 3 29 29 H 1.08991 * 109.47353 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47143 * 300.00332 * 1 2 3 31 31 H 0.97000 * 119.99707 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46815 * 270.00245 * 13 12 2 33 33 H 1.09001 * 109.47055 * 29.99891 * 13 12 2 34 34 H 1.08997 * 109.47475 * 150.00188 * 13 12 2 35 35 H 1.08001 * 125.90000 * 359.97438 * 18 17 14 36 36 H 1.09005 * 109.61268 * 24.91256 * 21 20 19 37 37 H 1.09002 * 109.52487 * 63.24635 * 22 21 20 38 38 H 1.09004 * 109.52023 * 303.12255 * 22 21 20 39 39 H 1.08999 * 109.47354 * 177.55660 * 23 22 21 40 40 H 1.08999 * 109.48099 * 297.59428 * 23 22 21 41 41 H 1.09007 * 109.48578 * 181.14563 * 25 24 23 42 42 H 1.09003 * 109.48319 * 301.17106 * 25 24 23 43 43 H 1.09002 * 109.52138 * 62.29619 * 26 25 24 44 44 H 1.09005 * 109.52063 * 182.42027 * 26 25 24 45 45 H 1.08000 * 126.12425 * 180.22194 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4864 -0.1415 -5.1123 11 1 3.6292 -1.7584 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.5794 1.1830 1.5748 16 8 3.7118 -0.8789 2.9815 17 6 1.8961 0.8536 3.4710 18 6 1.3344 2.1319 3.3879 19 7 0.5918 2.3218 4.4483 20 7 0.6650 1.1721 5.2454 21 6 -0.0158 0.9667 6.5263 22 6 0.9334 1.3241 7.6741 23 6 0.2427 1.0315 9.0087 24 8 -0.1418 -0.3441 9.0529 25 6 -1.0670 -0.7244 8.0325 26 6 -0.4289 -0.5024 6.6586 27 6 1.4686 0.2851 4.6222 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.7089 1.1614 -3.4844 32 1 0.7376 -2.1443 1.9994 33 1 1.5294 -2.5968 0.4709 34 1 2.4628 -2.5819 1.9864 35 1 1.4845 2.8385 2.5850 36 1 -0.9018 1.5997 6.5753 37 1 1.1881 2.3825 7.6201 38 1 1.8416 0.7264 7.5952 39 1 0.9300 1.2433 9.8278 40 1 -0.6428 1.6597 9.1052 41 1 -1.3234 -1.7776 8.1482 42 1 -1.9697 -0.1193 8.1162 43 1 0.4511 -1.1377 6.5588 44 1 -1.1483 -0.7513 5.8784 45 1 1.7250 -0.7017 4.9786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095432599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:29 Heat of formation + Delta-G solvation = -38.733371 kcal Electronic energy + Delta-G solvation = -29027.280785 eV Core-core repulsion = 24980.988214 eV Total energy + Delta-G solvation = -4046.292571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48792 -39.60011 -36.55894 -36.10343 -35.16240 -35.10220 -32.54473 -31.78409 -30.72074 -30.29886 -29.06038 -25.50764 -25.41453 -25.12091 -24.23720 -22.35409 -21.47781 -20.62911 -20.16126 -18.59685 -17.70646 -16.85280 -16.66868 -16.60564 -16.18854 -15.51270 -15.43071 -15.22846 -15.06262 -14.93039 -14.47498 -13.96854 -13.85543 -13.46344 -13.17459 -13.02431 -12.88861 -12.63805 -12.19517 -11.97128 -11.94954 -11.74796 -11.61982 -11.48688 -11.30144 -11.28019 -11.17887 -10.99855 -10.87241 -10.78885 -10.52904 -10.36656 -10.21569 -10.19068 -10.00575 -9.57946 -9.24218 -9.11890 -8.42790 -7.91493 -6.04626 -4.11010 1.12608 1.58914 2.19661 2.44954 3.30308 3.31763 3.37606 3.41785 3.82777 3.90678 4.09746 4.30241 4.39478 4.40944 4.42235 4.49422 4.58365 4.69774 4.81882 4.90761 5.03848 5.12726 5.14339 5.19664 5.27172 5.38323 5.41016 5.53394 5.62600 5.73079 5.76349 6.12172 6.36577 6.46604 6.60928 6.69281 6.73714 6.84239 6.87089 7.08021 7.46325 7.49117 7.66321 7.82431 8.07836 8.30524 8.91008 9.54417 11.01091 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022107 B = 0.002906 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.290695 B = 9634.223218 C = 9712.018809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.268 3.732 3 H 0.062 0.938 4 C -0.519 4.519 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.980 5.980 13 C 0.096 3.904 14 S 2.713 3.287 15 O -0.954 6.954 16 O -0.983 6.983 17 C -0.804 4.804 18 C 0.140 3.860 19 N -0.298 5.298 20 N -0.362 5.362 21 C 0.156 3.844 22 C -0.170 4.170 23 C 0.066 3.934 24 O -0.379 6.379 25 C 0.068 3.932 26 C -0.173 4.173 27 C 0.170 3.830 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.009 0.991 31 H 0.263 0.737 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.199 0.801 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 -1.636 21.137 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.079 0.921 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.820 5.820 13 C -0.051 4.051 14 S 2.800 3.200 15 O -0.944 6.944 16 O -0.973 6.973 17 C -0.900 4.900 18 C -0.049 4.049 19 N -0.117 5.117 20 N -0.139 5.139 21 C 0.054 3.946 22 C -0.209 4.209 23 C -0.011 4.011 24 O -0.298 6.298 25 C -0.010 4.010 26 C -0.212 4.212 27 C 0.018 3.982 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.215 0.785 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.075 0.925 41 H 0.124 0.876 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.401 -0.744 21.929 22.597 hybrid contribution -0.064 -0.583 -1.327 1.451 sum -5.465 -1.327 20.602 21.356 Atomic orbital electron populations 1.22112 0.98374 0.99663 1.00502 1.18751 0.91205 0.93231 0.80285 0.92072 1.21338 1.31583 1.13015 0.89986 0.91819 1.24902 0.94988 0.94999 0.98962 1.69861 1.36567 1.22657 1.23753 0.86505 0.79289 0.79279 0.82389 1.20734 1.21144 1.19780 1.57389 1.70371 1.19479 1.34805 1.21312 0.98674 0.82309 1.02762 1.01242 0.73412 0.73045 0.72261 1.93555 1.73446 1.56104 1.71338 1.93474 1.68908 1.59633 1.75326 1.32171 1.31138 1.08620 1.18087 1.23596 0.91250 0.94313 0.95781 1.77397 1.23904 1.05206 1.05156 1.49264 1.35793 1.11729 1.17134 1.21372 0.95851 0.98067 0.79263 1.22718 0.99763 1.03941 0.94439 1.22582 0.99076 0.82909 0.96559 1.87985 1.63554 1.26430 1.51805 1.22561 0.91264 1.01960 0.85180 1.22715 1.03577 0.94739 1.00145 1.22300 0.89149 0.95775 0.90978 0.88939 0.94940 0.97212 0.92715 0.94713 0.89668 0.91752 0.78461 0.87487 0.89521 0.89930 0.87864 0.92503 0.87607 0.92441 0.89514 0.89157 0.79791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.97 37.15 0.33 -3.01 16 2 C 0.27 6.48 2.62 -69.09 -0.18 6.30 16 3 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 4 C -0.52 -13.79 7.99 -34.44 -0.28 -14.06 16 5 H 0.06 1.67 7.33 -52.49 -0.38 1.28 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.98 -20.09 3.06 -115.86 -0.35 -20.44 16 13 C 0.10 1.65 9.65 59.85 0.58 2.23 16 14 S 2.71 53.08 5.83 -107.50 -0.63 52.46 16 15 O -0.95 -21.94 16.43 -57.17 -0.94 -22.88 16 16 O -0.98 -19.63 16.45 -57.17 -0.94 -20.57 16 17 C -0.80 -13.30 6.17 -40.01 -0.25 -13.55 16 18 C 0.14 2.30 11.82 -17.36 -0.21 2.09 16 19 N -0.30 -4.63 12.58 30.63 0.39 -4.25 16 20 N -0.36 -4.66 3.54 -54.68 -0.19 -4.86 16 21 C 0.16 1.41 3.30 -67.74 -0.22 1.19 16 22 C -0.17 -1.33 5.74 -26.59 -0.15 -1.48 16 23 C 0.07 0.41 6.84 37.21 0.25 0.67 16 24 O -0.38 -2.98 10.76 -35.23 -0.38 -3.36 16 25 C 0.07 0.40 6.84 37.21 0.25 0.66 16 26 C -0.17 -1.24 5.13 -26.59 -0.14 -1.37 16 27 C 0.17 2.33 10.33 -17.23 -0.18 2.15 16 28 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 29 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 30 H 0.01 0.19 8.14 -51.92 -0.42 -0.24 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 34 H 0.06 1.01 7.02 -51.93 -0.36 0.65 16 35 H 0.20 3.02 8.06 -52.49 -0.42 2.60 16 36 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.63 7.01 -51.93 -0.36 0.26 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.19 1.98 7.18 -52.49 -0.38 1.61 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -33.60 375.54 -8.77 -42.37 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.71 Total: 0.49 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -0.27 Total: -16.57 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.46 Total: -53.50 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -2.26 Total: -46.81 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.63 Total: 52.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.60 -8.77 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095432599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.633 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds