Wall clock time and date at job start Tue Mar 31 2020 05:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86802 * 119.99977 * 2 1 4 4 H 1.48498 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47075 * 300.00371 * 3 2 1 6 6 H 1.48499 * 109.46955 * 60.00240 * 3 2 1 7 7 C 1.39061 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00105 * 179.97438 * 7 2 1 9 9 N 1.36828 * 119.99599 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00108 * 179.97438 * 9 7 2 11 11 O 1.21673 * 119.99589 * 0.02562 * 10 9 7 12 12 C 1.46989 * 120.00229 * 180.02562 * 10 9 7 13 13 C 1.38199 * 127.87987 * 180.02562 * 12 10 9 14 14 C 1.38572 * 111.24334 * 179.97438 * 13 12 10 15 15 C 1.48416 * 121.23615 * 179.97438 * 14 13 12 16 16 C 1.39346 * 120.10210 * 359.72566 * 15 14 13 17 17 C 1.37998 * 119.91668 * 179.74319 * 16 15 14 18 18 C 1.38434 * 120.11772 * 0.53181 * 17 16 15 19 19 Cl 1.73600 * 119.89867 * 179.76455 * 18 17 16 20 20 C 1.38532 * 120.20322 * 359.74375 * 18 17 16 21 21 Cl 1.73599 * 119.95788 * 179.97438 * 20 18 17 22 22 C 1.38133 * 120.07877 * 359.97438 * 20 18 17 23 23 N 1.30332 * 117.52137 * 0.27431 * 14 13 12 24 24 S 1.56261 * 110.39342 * 359.56690 * 23 14 13 25 25 H 0.96997 * 119.99929 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00152 * 359.97438 * 9 7 2 27 27 H 1.08001 * 124.37715 * 359.97438 * 13 12 10 28 28 H 1.08003 * 120.04351 * 359.97438 * 16 15 14 29 29 H 1.08001 * 119.93918 * 180.27863 * 17 16 15 30 30 H 1.07999 * 120.05443 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3464 -0.0006 5 1 1.8888 2.3965 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0090 -1.2043 -0.0005 8 1 3.0889 -1.2042 -0.0010 9 7 1.3248 -2.3892 -0.0005 10 6 1.9987 -3.5565 -0.0016 11 8 3.2154 -3.5564 -0.0021 12 6 1.2637 -4.8294 -0.0022 13 6 1.7841 -6.1097 -0.0027 14 6 0.7767 -7.0612 -0.0026 15 6 1.0885 -8.5122 -0.0037 16 6 2.4139 -8.9422 -0.0107 17 6 2.6995 -10.2923 -0.0063 18 6 1.6717 -11.2197 -0.0061 19 17 2.0375 -12.9168 -0.0068 20 6 0.3522 -10.7977 -0.0049 21 17 -0.9316 -11.9662 -0.0054 22 6 0.0570 -9.4483 -0.0034 23 7 -0.4547 -6.6344 -0.0075 24 16 -0.4896 -5.0722 -0.0015 25 1 -0.4850 0.8400 0.0004 26 1 0.3548 -2.3892 0.0002 27 1 2.8395 -6.3390 -0.0032 28 1 3.2168 -8.2198 -0.0157 29 1 3.7267 -10.6260 -0.0072 30 1 -0.9718 -9.1198 -0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095433616.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:42 Heat of formation + Delta-G solvation = 12.270057 kcal Electronic energy + Delta-G solvation = -20597.001597 eV Core-core repulsion = 16956.432562 eV Total energy + Delta-G solvation = -3640.569034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.974 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22982 -38.74331 -37.98417 -36.77793 -36.62040 -34.32060 -31.83000 -31.51537 -31.21649 -30.70014 -26.36371 -24.97464 -23.34651 -22.58357 -20.71865 -19.39540 -18.32583 -17.93593 -17.70253 -16.45021 -15.88229 -15.31165 -15.14972 -14.88827 -14.40406 -14.19491 -14.14171 -14.11486 -13.41987 -13.17614 -12.98612 -12.46751 -12.14332 -12.04712 -11.86761 -11.69620 -11.33685 -11.25804 -11.16226 -10.93997 -10.64928 -10.50131 -10.48360 -9.91750 -9.53458 -9.25944 -9.16774 -8.82122 -8.36364 -8.08981 -6.82115 -4.10642 0.26565 0.79823 0.90705 1.56680 1.63307 1.93003 2.07329 2.39669 3.01454 3.09971 3.16696 3.40838 3.87360 3.96742 4.27238 4.37580 4.66874 4.80646 4.92387 4.97317 5.01513 5.16281 5.44392 5.55492 5.68770 5.83946 5.93665 6.05137 6.18408 6.29209 6.74889 7.18627 7.67930 8.20552 8.78759 9.10043 9.66590 10.33291 Molecular weight = 341.97amu Principal moments of inertia in cm(-1) A = 0.032016 B = 0.002216 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.355054 B =12634.992814 C =13499.503296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.287 4.287 8 H 0.115 0.885 9 N -0.529 5.529 10 C 0.487 3.513 11 O -0.585 6.585 12 C -0.204 4.204 13 C -0.147 4.147 14 C 0.121 3.879 15 C 0.007 3.993 16 C -0.084 4.084 17 C -0.097 4.097 18 C -0.031 4.031 19 Cl -0.053 7.053 20 C -0.032 4.032 21 Cl -0.051 7.051 22 C -0.070 4.070 23 N -0.543 5.543 24 S 0.415 5.585 25 H 0.281 0.719 26 H 0.394 0.606 27 H 0.171 0.829 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -18.302 0.000 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.418 4.418 8 H 0.133 0.867 9 N -0.162 5.162 10 C 0.274 3.726 11 O -0.472 6.472 12 C -0.337 4.337 13 C -0.181 4.181 14 C -0.049 4.049 15 C 0.002 3.998 16 C -0.105 4.105 17 C -0.116 4.116 18 C -0.059 4.059 19 Cl -0.024 7.024 20 C -0.060 4.060 21 Cl -0.022 7.022 22 C -0.091 4.091 23 N -0.374 5.374 24 S 0.572 5.428 25 H 0.091 0.909 26 H 0.228 0.772 27 H 0.188 0.812 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.602 -17.976 -0.005 18.163 hybrid contribution 1.353 -0.064 0.000 1.355 sum -1.249 -18.040 -0.005 18.084 Atomic orbital electron populations 1.69592 1.06319 1.29416 1.45888 1.25521 0.95790 1.00535 0.96192 0.85636 0.79855 0.79856 0.78173 1.18689 1.20214 1.20211 1.20017 0.94084 0.81687 1.46016 0.86706 1.41927 1.09447 1.04838 1.59992 1.16264 0.86981 0.81306 0.88028 1.90663 1.12307 1.85918 1.58265 1.27206 0.99899 0.99224 1.07362 1.21632 1.01405 0.89598 1.05449 1.19172 0.87134 0.93929 1.04658 1.18183 0.92782 0.89546 0.99323 1.21380 0.96087 0.95425 0.97596 1.20954 0.98805 0.91600 1.00195 1.20857 0.92661 0.86404 1.06012 1.98385 1.94753 1.12568 1.96718 1.20639 0.87998 0.90961 1.06370 1.98387 1.49186 1.57810 1.96788 1.21128 1.01174 0.89097 0.97719 1.71984 1.25552 1.13555 1.26303 1.81762 1.03779 0.97463 1.59776 0.90880 0.77212 0.81214 0.83434 0.83501 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.52 13.05 55.50 0.72 -20.80 16 2 C 0.03 0.62 5.50 -17.45 -0.10 0.52 16 3 Si 0.94 18.97 29.55 -169.99 -5.02 13.95 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.29 -7.34 9.68 -15.02 -0.15 -7.49 16 8 H 0.12 3.05 7.15 -52.49 -0.38 2.68 16 9 N -0.53 -12.67 5.27 -12.09 -0.06 -12.74 16 10 C 0.49 11.32 7.75 -12.71 -0.10 11.22 16 11 O -0.58 -15.36 16.53 5.21 0.09 -15.28 16 12 C -0.20 -3.84 6.74 -36.05 -0.24 -4.08 16 13 C -0.15 -2.41 9.62 -39.47 -0.38 -2.79 16 14 C 0.12 1.83 6.58 -84.19 -0.55 1.28 16 15 C 0.01 0.08 5.88 -104.90 -0.62 -0.53 16 16 C -0.08 -0.88 9.45 -39.26 -0.37 -1.25 16 17 C -0.10 -0.90 9.81 -39.60 -0.39 -1.29 16 18 C -0.03 -0.32 6.33 -39.40 -0.25 -0.57 16 19 Cl -0.05 -0.51 27.94 -51.86 -1.45 -1.96 16 20 C -0.03 -0.36 6.32 -39.51 -0.25 -0.61 16 21 Cl -0.05 -0.54 27.94 -51.86 -1.45 -1.99 16 22 C -0.07 -0.86 9.38 -39.23 -0.37 -1.22 16 23 N -0.54 -8.61 10.49 25.62 0.27 -8.34 16 24 S 0.41 6.65 22.78 -107.50 -2.45 4.20 16 25 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 26 H 0.39 8.92 7.26 -40.82 -0.30 8.62 16 27 H 0.17 2.49 6.65 -52.49 -0.35 2.14 16 28 H 0.15 1.31 6.45 -52.48 -0.34 0.97 16 29 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.15 1.87 7.62 -52.49 -0.40 1.47 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -27.90 319.42 -9.62 -37.52 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -1.32 Total: 7.44 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.76 Total: -6.81 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.93 Total: -41.88 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.09 Total: -15.28 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -2.45 Total: 4.20 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -2.90 Total: -3.95 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.90 -9.62 -37.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095433616.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.787 kcal (2) G-P(sol) polarization free energy of solvation -27.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds