Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99824 * 2 1 4 4 H 1.48496 * 109.47174 * 270.00417 * 3 2 1 5 5 H 1.48499 * 109.47005 * 30.00131 * 3 2 1 6 6 H 1.48498 * 109.47019 * 149.99982 * 3 2 1 7 7 C 1.37878 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99588 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00096 * 0.02562 * 7 2 1 10 10 O 1.42103 * 106.40551 * 61.54300 * 9 7 2 11 11 O 1.42099 * 106.39795 * 288.62460 * 9 7 2 12 12 N 1.65596 * 107.21674 * 175.08405 * 9 7 2 13 13 C 1.46500 * 119.99850 * 63.51890 * 12 9 7 14 14 H 1.09000 * 109.47345 * 334.59610 * 13 12 9 15 15 C 1.50703 * 109.47244 * 94.60124 * 13 12 9 16 16 C 1.38267 * 119.99002 * 220.00056 * 15 13 12 17 17 C 1.38225 * 120.02010 * 179.97438 * 16 15 13 18 18 C 1.38231 * 120.01525 * 359.97438 * 17 16 15 19 19 C 1.38330 * 119.98924 * 359.97438 * 18 17 16 20 20 Cl 1.73595 * 120.01461 * 180.02562 * 19 18 17 21 21 C 1.38189 * 119.99548 * 39.72146 * 15 13 12 22 22 C 1.53001 * 109.47299 * 214.59977 * 13 12 9 23 23 C 1.54260 * 110.03593 * 173.18441 * 22 13 12 24 24 C 1.54894 * 104.19951 * 217.10567 * 23 22 13 25 25 C 1.54893 * 102.74375 * 37.94114 * 24 23 22 26 26 C 1.53879 * 110.02917 * 56.01928 * 22 13 12 27 27 H 0.96996 * 120.00149 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00293 * 243.51618 * 12 9 7 29 29 H 1.08000 * 119.99013 * 359.97232 * 16 15 13 30 30 H 1.07999 * 119.98876 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.00714 * 180.02562 * 18 17 16 32 32 H 1.08001 * 120.00208 * 0.02720 * 21 15 13 33 33 H 1.09000 * 110.01792 * 294.63079 * 22 13 12 34 34 H 1.08998 * 110.48946 * 335.78495 * 23 22 13 35 35 H 1.09007 * 110.48754 * 98.42663 * 23 22 13 36 36 H 1.08995 * 110.75489 * 279.63113 * 24 23 22 37 37 H 1.08995 * 110.91606 * 156.33132 * 24 23 22 38 38 H 1.08997 * 110.48276 * 203.37897 * 25 24 23 39 39 H 1.09003 * 110.59662 * 80.79398 * 25 24 23 40 40 H 1.09007 * 110.02858 * 238.57006 * 26 22 13 41 41 H 1.08998 * 110.03433 * 359.95165 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0019 10 8 0.3608 -2.7420 -1.2007 11 8 0.5455 -2.8506 1.2896 12 7 2.2434 -3.9324 -0.1378 13 6 3.2372 -4.1335 0.9196 14 1 3.3972 -3.1954 1.4511 15 6 2.7398 -5.1790 1.8843 16 6 2.9417 -5.0179 3.2426 17 6 2.4853 -5.9762 4.1280 18 6 1.8262 -7.0958 3.6560 19 6 1.6230 -7.2570 2.2972 20 17 0.7948 -8.6625 1.7037 21 6 2.0769 -6.2956 1.4116 22 6 4.5557 -4.5988 0.2985 23 6 5.6584 -4.6506 1.3760 24 6 6.9343 -4.1762 0.6371 25 6 6.3960 -3.0598 -0.2919 26 6 5.0248 -3.5873 -0.7621 27 1 -0.4850 0.8400 0.0004 28 1 2.2413 -4.5094 -0.9175 29 1 3.4563 -4.1431 3.6119 30 1 2.6437 -5.8501 5.1889 31 1 1.4693 -7.8443 4.3479 32 1 1.9157 -6.4192 0.3509 33 1 4.4284 -5.5823 -0.1541 34 1 5.4204 -3.9757 2.1981 35 1 5.7862 -5.6693 1.7424 36 1 7.3675 -4.9886 0.0538 37 1 7.6646 -3.7752 1.3400 38 1 7.0622 -2.9175 -1.1428 39 1 6.2774 -2.1267 0.2588 40 1 5.1259 -4.0801 -1.7291 41 1 4.3126 -2.7653 -0.8348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = -95.624220 kcal Electronic energy + Delta-G solvation = -26525.422579 eV Core-core repulsion = 22749.246354 eV Total energy + Delta-G solvation = -3776.176224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.080 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -39.78056 -38.02889 -36.34539 -35.21420 -34.54743 -33.93010 -33.09569 -30.74240 -30.54877 -28.69733 -28.37648 -26.16331 -24.51290 -22.56974 -21.27553 -20.51453 -19.60896 -18.88804 -17.38933 -17.11899 -16.13897 -16.06741 -15.53842 -15.23786 -15.17653 -14.67466 -14.36606 -14.02776 -13.59739 -13.45711 -13.42169 -13.24317 -13.13669 -12.12126 -12.04100 -11.76663 -11.51029 -11.42474 -11.24477 -11.23873 -11.17386 -10.99893 -10.93200 -10.87231 -10.68837 -10.61476 -10.55512 -10.27881 -10.26678 -10.17832 -10.14104 -9.26649 -9.09907 -8.73445 -8.57675 -8.46058 -6.71797 -5.34377 1.33437 1.44025 2.23740 2.32576 3.04621 3.11997 3.17188 3.77847 4.03806 4.57224 4.62588 4.68839 4.75100 4.90584 4.92584 5.00956 5.19469 5.34695 5.43789 5.49980 5.59518 5.61860 5.71140 5.74086 5.78260 5.80526 5.82751 5.93541 6.00593 6.04598 6.10525 6.23569 6.33585 6.36061 6.42436 6.46423 6.48661 6.63370 6.66602 6.90932 6.97033 7.30657 7.83295 7.95572 8.86967 10.22325 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.010598 B = 0.004881 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.294648 B = 5735.654854 C = 7194.936722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.134 3.866 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.020 5.020 8 H 0.103 0.897 9 S 2.710 3.290 10 O -1.004 7.004 11 O -1.003 7.003 12 N -1.128 6.128 13 C 0.206 3.794 14 H 0.101 0.899 15 C -0.066 4.066 16 C -0.099 4.099 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.035 4.035 20 Cl -0.082 7.082 21 C -0.094 4.094 22 C -0.090 4.090 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.127 4.127 27 H 0.291 0.709 28 H 0.402 0.598 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.852 -10.896 4.525 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.810 3.190 10 O -0.994 6.994 11 O -0.993 6.993 12 N -0.880 5.880 13 C 0.097 3.903 14 H 0.119 0.881 15 C -0.068 4.068 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.138 4.138 19 C -0.062 4.062 20 Cl -0.053 7.053 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.164 4.164 27 H 0.101 0.899 28 H 0.233 0.767 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.625 -10.952 4.682 15.961 hybrid contribution 0.706 0.823 -0.441 1.171 sum 11.332 -10.129 4.241 15.779 Atomic orbital electron populations 1.69907 1.06802 1.30709 1.39898 1.24727 0.94408 1.00749 0.88537 0.86202 0.80200 0.80228 0.79185 1.19211 1.20023 1.18596 1.30548 1.05997 1.11765 1.67013 0.87860 1.00611 0.72136 0.73296 0.72995 1.93378 1.69289 1.87603 1.49158 1.93384 1.75960 1.87204 1.42702 1.56198 1.50459 1.51995 1.29364 1.19639 0.87427 0.96561 0.86656 0.88100 1.20356 0.96807 0.94991 0.94667 1.21134 0.99263 0.98912 0.92465 1.21022 0.98188 0.93586 0.99809 1.20945 1.00521 0.99033 0.93259 1.20857 1.00784 0.90456 0.94066 1.98347 1.77612 1.40626 1.88763 1.20798 0.97991 0.92698 0.99802 1.22045 0.93279 0.99537 0.96124 1.22407 0.94139 1.01283 0.97719 1.22482 0.97078 0.98258 0.98299 1.22378 0.96523 0.98483 0.98985 1.22279 0.97050 0.99459 0.97654 0.89899 0.76684 0.85288 0.85286 0.85446 0.85222 0.90637 0.91096 0.91701 0.91873 0.91891 0.92086 0.91426 0.91908 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.50 13.10 55.43 0.73 -23.77 16 2 C 0.13 3.64 5.46 -17.82 -0.10 3.54 16 3 Si 0.92 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -1.02 -26.75 9.47 30.60 0.29 -26.46 16 8 H 0.10 2.42 6.91 -52.49 -0.36 2.06 16 9 S 2.71 69.56 4.96 -107.50 -0.53 69.03 16 10 O -1.00 -29.14 17.91 -57.17 -1.02 -30.16 16 11 O -1.00 -28.54 17.81 -57.17 -1.02 -29.55 16 12 N -1.13 -21.03 3.89 -5.88 -0.02 -21.05 16 13 C 0.21 3.28 1.69 -69.08 -0.12 3.16 16 14 H 0.10 1.71 7.52 -51.93 -0.39 1.32 16 15 C -0.07 -1.03 4.54 -104.63 -0.48 -1.50 16 16 C -0.10 -1.40 9.39 -39.58 -0.37 -1.77 16 17 C -0.11 -1.35 10.05 -39.59 -0.40 -1.75 16 18 C -0.12 -1.54 9.83 -39.55 -0.39 -1.93 16 19 C -0.04 -0.51 6.32 -39.50 -0.25 -0.76 16 20 Cl -0.08 -1.09 28.96 -51.86 -1.50 -2.59 16 21 C -0.09 -1.45 9.11 -39.55 -0.36 -1.81 16 22 C -0.09 -1.14 2.59 -89.50 -0.23 -1.37 16 23 C -0.12 -1.27 5.72 -25.07 -0.14 -1.42 16 24 C -0.12 -1.23 6.91 -24.73 -0.17 -1.40 16 25 C -0.13 -1.44 6.83 -25.07 -0.17 -1.62 16 26 C -0.13 -1.66 6.16 -25.61 -0.16 -1.81 16 27 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.40 6.48 8.64 -34.47 -0.30 6.18 16 29 H 0.13 1.60 8.04 -52.49 -0.42 1.18 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.90 7.56 -52.49 -0.40 1.50 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.32 6.33 -51.93 -0.33 0.99 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -34.17 365.69 -11.47 -45.64 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.54 Total: 8.87 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: -3.04 Total: -36.90 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.70 Total: -44.82 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -2.04 Total: -59.72 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 69.56 SS G_CDS: -0.53 Total: 69.03 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.17 -11.47 -45.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.984 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds