Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48511 * 109.46909 * 269.99555 * 3 2 1 5 5 H 1.48499 * 109.47175 * 29.99193 * 3 2 1 6 6 H 1.48498 * 109.47476 * 149.99935 * 3 2 1 7 7 C 1.37879 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99711 * 179.97438 * 7 2 1 9 9 S 1.76190 * 119.99764 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40671 * 66.45968 * 9 7 2 11 11 O 1.42097 * 106.40613 * 293.53583 * 9 7 2 12 12 N 1.65598 * 107.21742 * 179.97438 * 9 7 2 13 13 C 1.46503 * 120.00141 * 63.73787 * 12 9 7 14 14 H 1.09004 * 109.47074 * 336.29944 * 13 12 9 15 15 C 1.50695 * 109.47269 * 216.29628 * 13 12 9 16 16 C 1.38265 * 119.99428 * 325.10788 * 15 13 12 17 17 C 1.38222 * 120.02514 * 179.76761 * 16 15 13 18 18 C 1.38241 * 120.01374 * 0.51147 * 17 16 15 19 19 C 1.38335 * 119.98389 * 359.74512 * 18 17 16 20 20 Cl 1.73601 * 120.01243 * 180.02562 * 19 18 17 21 21 C 1.38196 * 119.99357 * 145.38552 * 15 13 12 22 22 C 1.53003 * 109.47161 * 96.29395 * 13 12 9 23 23 C 1.54261 * 110.03404 * 176.11302 * 22 13 12 24 24 C 1.54965 * 104.16194 * 217.13847 * 23 22 13 25 25 C 1.54890 * 102.77654 * 37.88692 * 24 23 22 26 26 C 1.53880 * 110.03121 * 58.89727 * 22 13 12 27 27 H 0.97005 * 120.00527 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00465 * 244.01492 * 12 9 7 29 29 H 1.08002 * 119.98636 * 0.02562 * 16 15 13 30 30 H 1.07994 * 119.99390 * 180.25659 * 17 16 15 31 31 H 1.07999 * 120.01012 * 179.72407 * 18 17 16 32 32 H 1.08001 * 120.00470 * 0.02562 * 21 15 13 33 33 H 1.09001 * 110.01942 * 297.50943 * 22 13 12 34 34 H 1.08997 * 110.48960 * 335.78790 * 23 22 13 35 35 H 1.09002 * 110.48166 * 98.42894 * 23 22 13 36 36 H 1.09002 * 110.71946 * 279.57686 * 24 23 22 37 37 H 1.08999 * 110.92434 * 156.30058 * 24 23 22 38 38 H 1.09000 * 110.48950 * 203.40455 * 25 24 23 39 39 H 1.09002 * 110.59379 * 80.81824 * 25 24 23 40 40 H 1.09003 * 110.03362 * 238.56890 * 26 22 13 41 41 H 1.09003 * 110.02936 * 359.97438 * 26 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 16 1.1236 -2.7199 0.0005 10 8 0.4519 -2.7955 -1.2494 11 8 0.4510 -2.7950 1.2500 12 7 2.2483 -3.9353 0.0005 13 6 3.1579 -4.0916 1.1383 14 1 3.2547 -3.1392 1.6597 15 6 4.5110 -4.5328 0.6429 16 6 4.6059 -5.3807 -0.4452 17 6 5.8468 -5.7819 -0.9032 18 6 6.9934 -5.3442 -0.2670 19 6 6.8988 -4.5002 0.8250 20 17 8.3382 -3.9495 1.6240 21 6 5.6565 -4.0946 1.2796 22 6 2.5982 -5.1437 2.0979 23 6 3.5928 -5.3894 3.2513 24 6 3.4891 -6.9114 3.5235 25 6 3.3292 -7.5036 2.1013 26 6 2.4303 -6.4874 1.3672 27 1 -0.4851 0.8400 -0.0004 28 1 2.3077 -4.5413 -0.7545 29 1 3.7102 -5.7262 -0.9400 30 1 5.9205 -6.4408 -1.7556 31 1 7.9628 -5.6613 -0.6221 32 1 5.5820 -3.4362 2.1326 33 1 1.6390 -4.8128 2.4961 34 1 4.6049 -5.1248 2.9452 35 1 3.2999 -4.8222 4.1348 36 1 2.6154 -7.1351 4.1355 37 1 4.3968 -7.2847 3.9976 38 1 2.8445 -8.4789 2.1464 39 1 4.2978 -7.5825 1.6076 40 1 1.3897 -6.8091 1.4115 41 1 2.7471 -6.3899 0.3288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = -88.020993 kcal Electronic energy + Delta-G solvation = -26614.427180 eV Core-core repulsion = 22838.580656 eV Total energy + Delta-G solvation = -3775.846524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 343.080 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.25114 -37.87888 -36.43532 -35.23622 -34.54443 -33.96463 -33.09695 -31.28679 -30.33321 -28.80494 -28.34766 -26.15503 -24.60216 -22.80722 -21.54519 -20.46505 -19.38779 -18.99306 -17.46421 -17.12526 -16.29776 -15.82765 -15.76424 -15.45469 -15.11873 -14.75412 -14.50924 -13.96471 -13.86065 -13.65947 -13.36813 -13.06727 -12.92813 -12.76014 -12.04482 -11.73032 -11.49659 -11.46921 -11.39908 -11.28014 -11.22026 -10.99969 -10.95486 -10.83292 -10.65522 -10.60532 -10.47707 -10.42578 -10.30506 -10.22541 -9.96451 -9.25898 -9.09794 -8.85994 -8.67849 -8.53420 -6.71692 -5.33638 1.14546 1.24003 2.06941 2.31704 3.06199 3.13301 3.19646 3.60476 4.05136 4.56470 4.60788 4.64329 4.77705 4.83547 4.83807 4.97386 5.00952 5.21420 5.36846 5.40322 5.50503 5.60606 5.68307 5.73299 5.79444 5.81428 5.85072 5.91701 5.97547 6.03829 6.15900 6.19348 6.23851 6.29784 6.32733 6.40207 6.46087 6.55724 6.68137 6.78147 6.87330 7.30927 7.81462 7.95912 8.88044 10.22482 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.004835 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.851984 B = 5789.483122 C = 7248.568875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.134 3.866 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.007 7.007 11 O -1.002 7.002 12 N -1.128 6.128 13 C 0.205 3.795 14 H 0.102 0.898 15 C -0.052 4.052 16 C -0.105 4.105 17 C -0.106 4.106 18 C -0.119 4.119 19 C -0.031 4.031 20 Cl -0.078 7.078 21 C -0.104 4.104 22 C -0.105 4.105 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.124 4.124 27 H 0.291 0.709 28 H 0.400 0.600 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.101 -12.412 3.089 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.813 3.187 10 O -0.997 6.997 11 O -0.992 6.992 12 N -0.881 5.881 13 C 0.097 3.903 14 H 0.119 0.881 15 C -0.054 4.054 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.138 4.138 19 C -0.058 4.058 20 Cl -0.049 7.049 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.166 4.166 24 C -0.159 4.159 25 C -0.159 4.159 26 C -0.161 4.161 27 H 0.101 0.899 28 H 0.232 0.768 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.060 -12.285 3.315 17.531 hybrid contribution 1.183 1.072 -0.352 1.634 sum 13.243 -11.213 2.963 17.604 Atomic orbital electron populations 1.69890 1.06769 1.30734 1.40053 1.24720 0.94423 1.00764 0.88470 0.86205 0.80236 0.80179 0.79229 1.19203 1.19959 1.18595 1.30546 1.06097 1.11825 1.66948 0.87957 1.00483 0.72067 0.73189 0.72914 1.93377 1.73069 1.87603 1.45656 1.93365 1.72664 1.87428 1.45770 1.56212 1.54320 1.50547 1.27065 1.19538 0.84724 0.99357 0.86698 0.88056 1.20035 0.94766 0.95759 0.94874 1.21121 0.97802 0.97071 0.96309 1.21058 0.91705 0.99986 0.99642 1.20971 0.99468 0.98125 0.95210 1.20838 0.87492 1.00640 0.96818 1.98361 1.38071 1.88931 1.79564 1.20933 0.90001 1.00603 1.00778 1.22300 1.00355 0.94990 0.94847 1.22612 0.99863 0.96108 0.98050 1.22449 1.01058 0.95578 0.96803 1.22331 0.99669 0.98044 0.95877 1.22292 0.99722 0.94211 0.99881 0.89885 0.76791 0.85161 0.85224 0.85354 0.84599 0.88573 0.90832 0.91438 0.91732 0.92111 0.92311 0.91964 0.91910 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.54 13.19 55.43 0.73 -23.81 16 2 C 0.13 3.69 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -1.02 -27.35 9.50 30.60 0.29 -27.06 16 8 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 9 S 2.71 69.14 4.92 -107.50 -0.53 68.61 16 10 O -1.01 -28.83 18.02 -57.17 -1.03 -29.86 16 11 O -1.00 -27.89 17.52 -57.17 -1.00 -28.89 16 12 N -1.13 -20.96 4.91 -5.88 -0.03 -20.99 16 13 C 0.21 3.32 2.33 -69.08 -0.16 3.16 16 14 H 0.10 1.76 7.70 -51.93 -0.40 1.36 16 15 C -0.05 -0.72 4.13 -104.63 -0.43 -1.15 16 16 C -0.10 -1.27 7.82 -39.58 -0.31 -1.58 16 17 C -0.11 -1.10 10.05 -39.59 -0.40 -1.50 16 18 C -0.12 -1.27 9.83 -39.54 -0.39 -1.66 16 19 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 20 Cl -0.08 -0.88 28.96 -51.86 -1.50 -2.38 16 21 C -0.10 -1.35 7.48 -39.55 -0.30 -1.64 16 22 C -0.10 -1.54 3.01 -89.50 -0.27 -1.81 16 23 C -0.13 -1.58 6.18 -25.03 -0.15 -1.74 16 24 C -0.12 -1.31 6.91 -24.70 -0.17 -1.48 16 25 C -0.12 -1.32 6.83 -25.07 -0.17 -1.49 16 26 C -0.12 -1.58 5.64 -25.61 -0.14 -1.73 16 27 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.40 6.40 6.47 -34.47 -0.22 6.18 16 29 H 0.13 1.45 5.09 -52.49 -0.27 1.18 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.67 7.86 -52.49 -0.41 1.25 16 33 H 0.10 1.65 7.86 -51.93 -0.41 1.24 16 34 H 0.07 0.87 4.83 -51.93 -0.25 0.62 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.84 3.99 -51.93 -0.21 0.63 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -33.52 354.76 -11.08 -44.61 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.10 Total: 8.68 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -2.95 Total: -36.71 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.70 Total: -44.80 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -2.03 Total: -58.75 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 69.14 SS G_CDS: -0.53 Total: 68.61 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.52 -11.08 -44.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.415 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds