Wall clock time and date at job start Tue Mar 31 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99936 * 2 1 4 4 S 1.65600 * 119.99953 * 179.97438 * 2 1 3 5 5 O 1.42106 * 106.40087 * 336.46368 * 4 2 1 6 6 O 1.42093 * 106.40445 * 203.54193 * 4 2 1 7 7 C 1.76203 * 107.21711 * 90.00240 * 4 2 1 8 8 C 1.40735 * 119.78225 * 89.99714 * 7 4 2 9 9 C 1.35918 * 119.86466 * 179.70096 * 8 7 4 10 10 C 1.40957 * 119.24190 * 0.27580 * 9 8 7 11 11 N 1.32011 * 133.51559 * 179.97438 * 10 9 8 12 12 N 1.28658 * 109.68946 * 180.02562 * 11 10 9 13 13 C 1.31412 * 110.30088 * 359.97438 * 12 11 10 14 14 S 1.76202 * 126.33835 * 180.02562 * 13 12 11 15 15 C 1.81398 * 103.00109 * 359.97438 * 14 13 12 16 16 C 1.50706 * 109.46998 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00052 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99677 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00295 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99741 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46874 * 60.00326 * 20 18 16 22 22 H 1.48501 * 109.47147 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47424 * 300.00028 * 20 18 16 24 24 N 1.36357 * 107.32090 * 0.02562 * 13 12 11 25 25 C 1.34814 * 119.78175 * 270.29173 * 7 4 2 26 26 H 1.09004 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47085 * 300.00288 * 1 2 3 28 28 H 1.08997 * 109.47107 * 60.00062 * 1 2 3 29 29 H 1.08998 * 109.46887 * 269.99464 * 3 2 1 30 30 H 1.08994 * 109.46991 * 29.99928 * 3 2 1 31 31 H 1.09005 * 109.46829 * 150.00298 * 3 2 1 32 32 H 1.08002 * 120.07099 * 359.97438 * 8 7 4 33 33 H 1.08000 * 120.38259 * 180.30667 * 9 8 7 34 34 H 1.09000 * 109.47629 * 299.99960 * 15 14 13 35 35 H 1.09006 * 109.46878 * 60.00029 * 15 14 13 36 36 H 0.97001 * 120.00105 * 179.97438 * 19 18 16 37 37 H 1.08002 * 119.76732 * 359.97438 * 25 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4112 -2.4063 0.5455 6 8 3.5759 -1.1566 0.5450 7 6 2.5538 -1.8865 -1.6822 8 6 3.7151 -1.4552 -2.3501 9 6 3.9209 -1.8083 -3.6464 10 6 2.9590 -2.6004 -4.3054 11 7 2.8704 -3.0946 -5.5263 12 7 1.7784 -3.7645 -5.6445 13 6 1.1052 -3.7419 -4.5162 14 16 -0.4450 -4.5215 -4.2095 15 6 -0.8241 -5.3143 -5.7963 16 6 -2.1431 -6.0362 -5.6947 17 1 -2.6980 -6.0193 -4.7684 18 6 -2.6414 -6.7182 -6.7845 19 7 -1.9654 -6.7392 -7.9124 20 14 -4.2767 -7.6123 -6.6588 21 1 -5.3479 -6.6401 -6.3235 22 1 -4.5864 -8.2626 -7.9574 23 1 -4.1955 -8.6457 -5.5954 24 7 1.8283 -3.0035 -3.6267 25 6 1.6368 -2.6386 -2.3233 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.3792 1.5833 -1.0277 30 1 1.6084 2.0283 0.5138 31 1 3.1500 1.1383 0.5138 32 1 4.4434 -0.8486 -1.8324 33 1 4.8115 -1.4861 -4.1655 34 1 -0.8839 -4.5556 -6.5766 35 1 -0.0378 -6.0279 -6.0429 36 1 -2.3158 -7.2193 -8.6790 37 1 0.7474 -2.9600 -1.8017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095944721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:55 Heat of formation + Delta-G solvation = 42.592840 kcal Electronic energy + Delta-G solvation = -24625.373514 eV Core-core repulsion = 20851.412856 eV Total energy + Delta-G solvation = -3773.960658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 342.061 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.44005 -38.37055 -37.75185 -36.62594 -36.25991 -34.16639 -33.31935 -31.64653 -29.66198 -28.70489 -28.55652 -25.19549 -24.76349 -24.09724 -23.06087 -22.73390 -19.79768 -18.91797 -18.24857 -17.70739 -17.39627 -16.76350 -16.64161 -16.38686 -16.04291 -15.24597 -15.12574 -14.82176 -14.74750 -14.05098 -13.52959 -13.40299 -13.06946 -12.97621 -12.84506 -12.58532 -12.52169 -12.51635 -12.40736 -12.05876 -12.03606 -11.94344 -11.58619 -11.45791 -11.03726 -10.96560 -10.83845 -10.46790 -10.14317 -9.84540 -9.62804 -9.43838 -8.94538 -8.66178 -7.03163 -6.31814 -4.41617 -0.18321 0.15521 0.72477 1.35957 2.26629 2.42081 2.62696 3.07079 3.16965 3.20347 3.24797 3.28190 3.30064 3.72253 3.95992 4.21962 4.24206 4.30574 4.37300 4.70164 4.84460 4.93345 4.94658 5.04818 5.14051 5.22249 5.32996 5.37920 5.41723 5.45276 5.66416 5.82081 5.96868 6.01814 6.48663 6.91363 7.01957 7.54395 7.77129 8.47461 8.58812 9.22948 10.78406 Molecular weight = 342.06amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.002922 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.173814 B = 9581.456646 C =10673.692873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.002 6.002 3 C 0.081 3.919 4 S 2.707 3.293 5 O -0.946 6.946 6 O -0.943 6.943 7 C -0.710 4.710 8 C -0.044 4.044 9 C -0.074 4.074 10 C 0.194 3.806 11 N -0.272 5.272 12 N -0.246 5.246 13 C 0.160 3.840 14 S -0.044 6.044 15 C 0.083 3.917 16 C -0.530 4.530 17 H 0.070 0.930 18 C 0.073 3.927 19 N -0.881 5.881 20 Si 0.912 3.088 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.401 5.401 25 C 0.228 3.772 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.270 0.730 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 17.066 16.821 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.842 5.842 3 C -0.064 4.064 4 S 2.793 3.207 5 O -0.936 6.936 6 O -0.933 6.933 7 C -0.800 4.800 8 C -0.069 4.069 9 C -0.096 4.096 10 C -0.060 4.060 11 N -0.114 5.114 12 N -0.087 5.087 13 C -0.208 4.208 14 S 0.187 5.813 15 C -0.064 4.064 16 C -0.570 4.570 17 H 0.088 0.912 18 C -0.133 4.133 19 N -0.517 5.517 20 Si 0.738 3.262 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 N -0.085 5.085 25 C 0.100 3.900 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.176 0.824 33 H 0.180 0.820 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.950 16.077 16.566 24.415 hybrid contribution -0.395 -0.086 -0.839 0.931 sum 7.554 15.991 15.727 23.667 Atomic orbital electron populations 1.21693 0.77530 1.04346 1.02921 1.57273 1.15713 1.21647 1.89574 1.21660 0.97370 0.84843 1.02533 1.01833 0.73341 0.72537 0.72955 1.93625 1.65966 1.58420 1.75637 1.93581 1.39946 1.84344 1.75450 1.30967 1.04761 1.16200 1.28083 1.20509 0.94667 0.98081 0.93689 1.20241 0.97954 0.97282 0.94157 1.22551 0.89664 1.02727 0.91043 1.74738 1.12978 1.11294 1.12413 1.74880 1.00513 1.15615 1.17727 1.27645 1.03563 1.01665 0.87973 1.85489 1.06740 1.59819 1.29274 1.21491 1.00972 0.98012 0.85969 1.20485 1.03418 1.33911 0.99194 0.91231 1.24940 0.98091 0.95706 0.94584 1.69962 1.38448 1.41095 1.02177 0.86336 0.82449 0.79767 0.77656 1.19739 1.20850 1.19723 1.44010 1.17928 1.36116 1.10410 1.21620 0.98019 0.88723 0.81686 0.89312 0.91053 0.91657 0.92340 0.90190 0.89587 0.82440 0.82017 0.92703 0.92689 0.92007 0.79646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.67 59.85 0.64 1.09 16 2 N -1.00 -6.78 3.58 -129.20 -0.46 -7.24 16 3 C 0.08 0.38 10.70 59.85 0.64 1.02 16 4 S 2.71 25.61 5.68 -107.50 -0.61 25.00 16 5 O -0.95 -11.24 15.77 -57.17 -0.90 -12.14 16 6 O -0.94 -10.35 15.90 -57.17 -0.91 -11.26 16 7 C -0.71 -7.58 5.94 -39.85 -0.24 -7.81 16 8 C -0.04 -0.43 9.53 -39.47 -0.38 -0.81 16 9 C -0.07 -0.87 10.11 -39.38 -0.40 -1.27 16 10 C 0.19 3.23 7.93 -155.72 -1.24 1.99 16 11 N -0.27 -5.49 12.28 31.23 0.38 -5.10 16 12 N -0.25 -5.48 11.80 30.67 0.36 -5.12 16 13 C 0.16 3.22 8.23 -88.40 -0.73 2.50 16 14 S -0.04 -0.91 22.03 -107.50 -2.37 -3.27 16 15 C 0.08 2.09 5.35 36.01 0.19 2.29 16 16 C -0.53 -14.09 9.13 -34.44 -0.31 -14.40 16 17 H 0.07 1.78 7.71 -52.49 -0.40 1.37 16 18 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 19 N -0.88 -25.04 13.29 55.43 0.74 -24.31 16 20 Si 0.91 20.39 29.54 -169.99 -5.02 15.37 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 N -0.40 -6.74 2.98 -62.70 -0.19 -6.93 16 25 C 0.23 2.96 10.43 -16.60 -0.17 2.78 16 26 H 0.09 0.54 6.91 -51.93 -0.36 0.18 16 27 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 31 H 0.09 0.40 7.02 -51.93 -0.36 0.04 16 32 H 0.16 1.04 7.65 -52.49 -0.40 0.64 16 33 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.05 1.48 8.14 -51.92 -0.42 1.06 16 35 H 0.05 1.50 8.14 -51.92 -0.42 1.07 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.19 2.04 7.52 -52.49 -0.39 1.65 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -34.46 349.64 -9.81 -44.27 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -4.01 Total: -3.78 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.09 Total: -10.76 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.83 Total: -48.70 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.81 Total: -23.40 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 24.70 SS G_CDS: -2.98 Total: 21.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.46 -9.81 -44.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095944721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.866 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds