Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34412 * 125.74144 * 2 1 4 4 C 1.38279 * 107.36107 * 180.09956 * 3 2 1 5 5 C 1.46975 * 126.44257 * 179.89406 * 4 3 2 6 6 C 1.35049 * 120.00109 * 179.71042 * 5 4 3 7 7 C 1.41797 * 120.00073 * 180.02562 * 6 5 4 8 8 O 1.21764 * 119.99754 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00153 * 180.02562 * 7 6 5 10 10 C 1.40053 * 119.99718 * 185.52495 * 9 7 6 11 11 C 1.38671 * 120.10237 * 24.83801 * 10 9 7 12 12 C 1.38247 * 120.00188 * 179.97438 * 11 10 9 13 13 C 1.38298 * 120.21335 * 359.97438 * 12 11 10 14 14 C 1.38197 * 120.20423 * 0.02562 * 13 12 11 15 15 C 1.38772 * 119.99651 * 359.97438 * 14 13 12 16 16 S 1.76193 * 120.11028 * 180.02562 * 15 14 13 17 17 C 1.81404 * 102.99956 * 359.97438 * 16 15 14 18 18 C 1.50703 * 109.47165 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99981 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99767 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00193 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99787 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47100 * 89.99589 * 22 20 18 24 24 H 1.48497 * 109.47156 * 210.00100 * 22 20 18 25 25 H 1.48501 * 109.46750 * 330.00025 * 22 20 18 26 26 C 1.41436 * 107.12044 * 359.63017 * 4 3 2 27 27 N 1.30448 * 108.03853 * 0.23181 * 26 4 3 28 28 H 1.08997 * 109.47386 * 270.29108 * 1 2 3 29 29 H 1.09002 * 109.47261 * 30.29300 * 1 2 3 30 30 H 1.08995 * 109.46856 * 150.28885 * 1 2 3 31 31 H 1.08002 * 126.31935 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.99833 * 359.71567 * 5 4 3 33 33 H 1.08003 * 120.00144 * 359.97438 * 6 5 4 34 34 H 0.96995 * 119.99775 * 5.52370 * 9 7 6 35 35 H 1.08000 * 119.99530 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.89027 * 179.97438 * 12 11 10 37 37 H 1.08001 * 119.89066 * 180.27726 * 13 12 11 38 38 H 1.08006 * 120.00540 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47117 * 300.00223 * 17 16 15 40 40 H 1.08995 * 109.46695 * 60.00138 * 17 16 15 41 41 H 0.97006 * 120.00087 * 179.97438 * 21 20 18 42 42 H 1.07995 * 125.98268 * 180.24774 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2502 1.0910 0.0000 4 6 3.5624 0.6549 -0.0023 5 6 4.7637 1.5017 -0.0053 6 6 5.9895 0.9348 -0.0014 7 6 7.1485 1.7517 -0.0038 8 8 7.0385 2.9643 -0.0089 9 7 8.3717 1.1859 -0.0004 10 6 9.5140 1.9882 0.1140 11 6 9.4320 3.2324 0.7209 12 6 10.5609 4.0225 0.8332 13 6 11.7744 3.5761 0.3424 14 6 11.8660 2.3376 -0.2639 15 6 10.7382 1.5375 -0.3813 16 16 10.8517 -0.0423 -1.1532 17 6 12.6043 -0.1488 -1.6089 18 6 12.8665 -1.4662 -2.2921 19 1 12.0596 -2.1693 -2.4373 20 6 14.1367 -1.7744 -2.7309 21 7 15.1193 -0.9185 -2.5538 22 14 14.4616 -3.4071 -3.5784 23 1 14.2618 -3.2536 -5.0419 24 1 15.8586 -3.8340 -3.3116 25 1 13.5224 -4.4317 -3.0555 26 6 3.5313 -0.7591 0.0050 27 7 2.2824 -1.1356 0.0062 28 1 -0.3634 0.0052 1.0276 29 1 -0.3634 0.8874 -0.5184 30 1 -0.3633 -0.8925 -0.5093 31 1 1.9175 2.1185 -0.0004 32 1 4.6662 2.5772 -0.0106 33 1 6.0870 -0.1408 0.0043 34 1 8.4610 0.2231 -0.0773 35 1 8.4862 3.5842 1.1057 36 1 10.4949 4.9914 1.3058 37 1 12.6539 4.1957 0.4370 38 1 12.8153 1.9920 -0.6457 39 1 12.8537 0.6675 -2.2867 40 1 13.2181 -0.0761 -0.7112 41 1 16.0131 -1.1355 -2.8622 42 1 4.3911 -1.4126 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = 84.773914 kcal Electronic energy + Delta-G solvation = -24922.852051 eV Core-core repulsion = 21189.224077 eV Total energy + Delta-G solvation = -3733.627974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 343.110 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55609 -40.37384 -38.14926 -34.85351 -34.47505 -33.25215 -32.94815 -30.69946 -30.39848 -29.13518 -28.57623 -27.11076 -24.35680 -23.33162 -22.65927 -21.94110 -21.50160 -20.50992 -19.37071 -17.81209 -17.48249 -16.88867 -16.51054 -16.22292 -15.95772 -15.12805 -15.03014 -14.87343 -14.75373 -14.38313 -13.97037 -13.92668 -13.51320 -13.32160 -13.25254 -12.97270 -12.92481 -12.73818 -12.36937 -12.29566 -12.20639 -11.70202 -11.19179 -11.00137 -10.95160 -10.75422 -10.65137 -10.30734 -10.03641 -9.96321 -9.69459 -9.62309 -9.17373 -9.12189 -8.63356 -8.32589 -7.86840 -6.54209 -6.27040 -4.32741 0.62263 1.52272 1.69756 1.81049 1.99324 2.43122 2.64013 3.22411 3.28385 3.32511 3.32759 3.48811 3.65308 4.00716 4.19310 4.29246 4.29892 4.55489 4.60631 4.78493 4.87042 4.91905 5.10557 5.10892 5.20399 5.32485 5.38057 5.47756 5.63966 5.85445 5.89137 6.06640 6.17569 6.22779 6.29164 6.45369 6.56587 6.64375 6.80115 6.92547 6.96003 6.99417 7.21274 7.36456 7.61946 7.65793 7.89034 8.26530 8.68128 9.31211 10.84086 Molecular weight = 343.11amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.002266 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.693288 B =12352.699549 C =14798.579087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.367 5.367 3 C 0.088 3.912 4 C -0.235 4.235 5 C 0.043 3.957 6 C -0.240 4.240 7 C 0.554 3.446 8 O -0.540 6.540 9 N -0.657 5.657 10 C 0.153 3.847 11 C -0.118 4.118 12 C -0.123 4.123 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.098 4.098 16 S -0.171 6.171 17 C 0.077 3.923 18 C -0.519 4.519 19 H 0.068 0.932 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.078 3.922 27 N -0.300 5.300 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.184 0.816 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.414 0.586 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.267 0.733 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.260 6.036 7.431 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 C -0.062 4.062 4 C -0.247 4.247 5 C 0.022 3.978 6 C -0.261 4.261 7 C 0.346 3.654 8 O -0.421 6.421 9 N -0.300 5.300 10 C 0.052 3.948 11 C -0.140 4.140 12 C -0.144 4.144 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.213 4.213 16 S 0.075 5.925 17 C -0.070 4.070 18 C -0.558 4.558 19 H 0.086 0.914 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.735 3.265 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.109 4.109 27 N -0.120 5.120 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.201 0.799 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.251 0.749 35 H 0.161 0.839 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -27.015 4.893 7.151 28.370 hybrid contribution 1.964 0.308 -0.339 2.017 sum -25.051 5.200 6.812 26.476 Atomic orbital electron populations 1.21970 0.73669 1.04956 1.03806 1.48405 1.07164 1.03956 1.55069 1.23183 0.90609 0.93642 0.98764 1.19472 0.92537 0.93228 1.19445 1.21576 0.89440 0.98880 0.87891 1.21611 0.92337 1.00536 1.11660 1.17144 0.83492 0.88257 0.76458 1.90763 1.86973 1.14488 1.49829 1.43473 1.04428 1.10919 1.71184 1.17232 0.84920 0.92839 0.99797 1.21223 0.99878 0.93330 0.99521 1.20941 0.92405 0.99665 1.01427 1.21013 0.97651 0.95954 0.99467 1.21210 0.97768 0.94503 1.00470 1.21810 0.95189 1.00816 1.03527 1.85006 1.23073 1.14275 1.70130 1.21361 0.84033 1.01705 0.99855 1.20610 0.95164 1.00879 1.39162 0.91351 1.24951 0.95454 0.97730 0.95538 1.69941 1.01268 1.35563 1.45835 0.86323 0.77661 0.82778 0.79745 1.20274 1.20905 1.19502 1.24239 0.95076 0.94428 0.97174 1.77200 1.02170 1.07782 1.24813 0.90305 0.89095 0.88905 0.79871 0.84676 0.85508 0.74863 0.83851 0.86234 0.86219 0.84805 0.93717 0.93726 0.92322 0.79176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.29 11.44 59.85 0.68 0.98 16 2 N -0.37 -2.71 3.98 -67.49 -0.27 -2.97 16 3 C 0.09 0.59 11.52 -16.41 -0.19 0.40 16 4 C -0.24 -2.06 6.08 -105.13 -0.64 -2.70 16 5 C 0.04 0.42 9.64 -37.18 -0.36 0.06 16 6 C -0.24 -2.62 9.33 -39.36 -0.37 -2.99 16 7 C 0.55 8.03 7.37 -14.90 -0.11 7.92 16 8 O -0.54 -9.11 13.27 5.13 0.07 -9.04 16 9 N -0.66 -10.16 5.16 -12.26 -0.06 -10.23 16 10 C 0.15 2.73 6.44 -83.45 -0.54 2.19 16 11 C -0.12 -1.98 8.72 -39.42 -0.34 -2.32 16 12 C -0.12 -1.88 10.04 -39.56 -0.40 -2.27 16 13 C -0.12 -1.94 10.04 -39.57 -0.40 -2.34 16 14 C -0.11 -2.17 9.36 -39.40 -0.37 -2.54 16 15 C -0.10 -1.92 6.12 -38.90 -0.24 -2.15 16 16 S -0.17 -3.62 20.55 -107.50 -2.21 -5.83 16 17 C 0.08 1.94 4.09 36.01 0.15 2.09 16 18 C -0.52 -14.13 9.13 -34.44 -0.31 -14.44 16 19 H 0.07 1.84 7.71 -52.48 -0.40 1.44 16 20 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 21 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 22 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.08 0.72 11.39 -16.92 -0.19 0.52 16 27 N -0.30 -3.03 12.49 30.89 0.39 -2.64 16 28 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.14 1.27 7.45 -52.49 -0.39 0.88 16 33 H 0.13 1.11 6.93 -52.48 -0.36 0.75 16 34 H 0.41 5.87 7.60 -40.82 -0.31 5.56 16 35 H 0.14 2.36 5.78 -52.49 -0.30 2.06 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.13 2.68 5.88 -52.48 -0.31 2.37 16 39 H 0.04 1.18 7.75 -51.93 -0.40 0.78 16 40 H 0.04 1.17 7.75 -51.93 -0.40 0.76 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.19 1.34 7.31 -52.49 -0.38 0.96 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -33.82 376.84 -9.35 -43.17 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.94 Total: 6.29 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -3.72 Total: -15.83 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.79 Total: -40.29 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -2.21 Total: -5.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.82 -9.35 -43.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.947 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds