Wall clock time and date at job start Tue Mar 31 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38285 * 119.92895 * 2 1 4 4 C 1.38117 * 120.07119 * 180.02562 * 3 2 1 5 5 C 1.38870 * 119.92991 * 359.97438 * 4 3 2 6 6 N 1.39926 * 120.07106 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99845 * 33.61106 * 6 5 4 8 8 O 1.21592 * 120.00137 * 5.35591 * 7 6 5 9 9 N 1.34779 * 119.99787 * 185.35088 * 7 6 5 10 10 C 1.40185 * 119.99946 * 185.42250 * 9 7 6 11 11 C 1.38633 * 120.09713 * 21.31172 * 10 9 7 12 12 C 1.38267 * 120.00896 * 180.02562 * 11 10 9 13 13 C 1.38289 * 120.20364 * 0.02562 * 12 11 10 14 14 C 1.38204 * 120.19935 * 359.97438 * 13 12 11 15 15 C 1.38772 * 119.98998 * 0.02562 * 14 13 12 16 16 S 1.76201 * 120.10506 * 180.02562 * 15 14 13 17 17 C 1.81400 * 102.99858 * 359.97438 * 16 15 14 18 18 C 1.50700 * 109.46979 * 179.97438 * 17 16 15 19 19 H 1.08003 * 120.00028 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99785 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00193 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99990 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46581 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46956 * 119.99831 * 22 20 18 25 25 H 1.48497 * 109.46948 * 239.99843 * 22 20 18 26 26 C 1.38872 * 119.85544 * 0.25635 * 5 4 3 27 27 C 1.38114 * 119.93079 * 359.46836 * 26 5 4 28 28 H 1.09001 * 109.47246 * 90.00278 * 1 2 3 29 29 H 1.09008 * 109.47124 * 210.00385 * 1 2 3 30 30 H 1.08999 * 109.47268 * 330.00160 * 1 2 3 31 31 H 1.08004 * 119.96127 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.03374 * 180.02562 * 4 3 2 33 33 H 0.97003 * 119.99960 * 213.61931 * 6 5 4 34 34 H 0.97000 * 120.00376 * 5.41976 * 9 7 6 35 35 H 1.08003 * 119.99531 * 0.05385 * 11 10 9 36 36 H 1.07996 * 119.89437 * 180.02562 * 12 11 10 37 37 H 1.07999 * 119.89822 * 180.27466 * 13 12 11 38 38 H 1.08002 * 120.00203 * 180.02562 * 14 13 12 39 39 H 1.08994 * 109.47232 * 300.00330 * 17 16 15 40 40 H 1.09001 * 109.47134 * 60.00189 * 17 16 15 41 41 H 0.97000 * 119.99584 * 180.02562 * 21 20 18 42 42 H 1.08005 * 120.03235 * 179.75009 * 26 5 4 43 43 H 1.08003 * 119.96553 * 180.27468 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6732 0.0001 -0.0016 7 6 6.3475 0.9725 0.6435 8 8 5.7440 1.7934 1.3071 9 7 7.6908 1.0348 0.5532 10 6 8.4016 1.9742 1.3132 11 6 7.8304 2.5236 2.4507 12 6 8.5328 3.4503 3.1987 13 6 9.8054 3.8328 2.8157 14 6 10.3830 3.2905 1.6833 15 6 9.6853 2.3598 0.9265 16 16 10.4191 1.6660 -0.5174 17 6 12.0427 2.4729 -0.5779 18 6 12.8061 1.9758 -1.7784 19 1 12.3592 1.2477 -2.4391 20 6 14.0752 2.4506 -2.0331 21 7 14.6197 3.3369 -1.2283 22 14 15.0214 1.8350 -3.5216 23 1 14.1936 0.8484 -4.2609 24 1 15.3420 2.9792 -4.4122 25 1 16.2809 1.1877 -3.0745 26 6 3.5780 -1.2017 -0.0054 27 6 2.1969 -1.1983 0.0009 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6551 2.1327 -0.0004 32 1 4.1163 2.1382 -0.0001 33 1 6.1578 -0.6996 -0.4668 34 1 8.1658 0.4297 -0.0376 35 1 6.8367 2.2272 2.7529 36 1 8.0863 3.8768 4.0847 37 1 10.3514 4.5537 3.4061 38 1 11.3772 3.5912 1.3873 39 1 11.9095 3.5520 -0.6528 40 1 12.5993 2.2376 0.3292 41 1 15.5124 3.6711 -1.4078 42 1 4.1164 -2.1380 -0.0095 43 1 1.6552 -2.1327 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:11 Heat of formation + Delta-G solvation = 21.622116 kcal Electronic energy + Delta-G solvation = -25417.779964 eV Core-core repulsion = 21746.839434 eV Total energy + Delta-G solvation = -3670.940530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.114 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.11594 -39.48437 -38.21379 -35.35721 -34.77900 -33.30525 -31.79045 -31.11874 -30.74971 -29.23383 -28.63264 -26.46651 -23.67168 -23.25027 -22.85816 -22.49425 -21.36263 -20.65961 -18.61049 -18.24791 -17.36777 -16.46364 -16.29048 -15.90831 -15.56050 -15.30742 -15.04894 -14.62455 -14.39648 -14.11821 -13.99313 -13.93136 -13.60331 -13.36658 -13.14931 -13.01588 -12.61952 -12.42911 -12.39580 -12.25700 -11.89735 -11.72765 -11.35931 -11.20075 -11.01038 -10.79334 -10.56916 -10.45474 -10.15297 -9.78065 -9.72217 -9.25266 -9.20529 -9.09741 -8.68819 -8.24719 -7.93675 -6.62773 -6.32042 -4.38021 1.07142 1.23681 1.54747 1.70173 2.22987 2.48974 2.93008 3.17407 3.25157 3.29609 3.52384 3.62866 3.94532 4.10932 4.24835 4.61467 4.68683 4.83773 5.03441 5.05683 5.18705 5.21747 5.31125 5.33458 5.37187 5.51501 5.54971 5.65856 5.76165 5.77424 5.83429 6.08740 6.10726 6.18130 6.33800 6.37854 6.44337 6.56293 6.70165 6.83347 6.85409 6.89518 6.90029 6.93581 7.28741 7.60573 7.69155 7.83433 8.27495 8.63072 9.26314 10.79080 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.015422 B = 0.002294 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.170548 B =12202.999616 C =13663.452915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C -0.100 4.100 4 C -0.116 4.116 5 C 0.165 3.835 6 N -0.684 5.684 7 C 0.706 3.294 8 O -0.557 6.557 9 N -0.666 5.666 10 C 0.167 3.833 11 C -0.123 4.123 12 C -0.120 4.120 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.098 4.098 16 S -0.175 6.175 17 C 0.079 3.921 18 C -0.519 4.519 19 H 0.069 0.931 20 C 0.068 3.932 21 N -0.888 5.888 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.145 4.145 27 C -0.101 4.101 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.137 0.863 33 H 0.409 0.591 34 H 0.412 0.588 35 H 0.151 0.849 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.267 0.733 42 H 0.125 0.875 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.246 -6.923 4.659 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.109 4.109 3 C -0.118 4.118 4 C -0.136 4.136 5 C 0.070 3.930 6 N -0.331 5.331 7 C 0.407 3.593 8 O -0.433 6.433 9 N -0.312 5.312 10 C 0.066 3.934 11 C -0.145 4.145 12 C -0.141 4.141 13 C -0.141 4.141 14 C -0.137 4.137 15 C -0.214 4.214 16 S 0.071 5.929 17 C -0.068 4.068 18 C -0.559 4.559 19 H 0.087 0.913 20 C -0.137 4.137 21 N -0.525 5.525 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.166 4.166 27 C -0.120 4.120 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.155 0.845 33 H 0.245 0.755 34 H 0.249 0.751 35 H 0.169 0.831 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.143 0.857 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.941 -6.946 4.382 24.367 hybrid contribution 1.808 0.065 -0.388 1.850 sum -21.133 -6.881 3.994 22.582 Atomic orbital electron populations 1.20748 0.91259 1.02633 1.02135 1.19896 0.96107 0.93159 1.01777 1.20927 0.93493 0.97646 0.99766 1.21220 0.94157 0.97845 1.00394 1.17477 0.81075 0.94180 1.00280 1.42614 1.05012 1.29450 1.56072 1.15816 0.81460 0.81815 0.80188 1.90873 1.67457 1.41059 1.43911 1.42582 1.04841 1.37847 1.45955 1.16978 0.90476 0.93641 0.92334 1.21411 1.01596 0.98410 0.93091 1.20963 0.94717 0.98533 0.99925 1.21038 0.95562 1.00480 0.97012 1.21206 1.00469 0.96629 0.95413 1.21710 0.96536 1.01883 1.01233 1.84961 1.22811 1.58141 1.27018 1.21369 0.86000 0.97750 1.01665 1.20642 0.99913 1.26112 1.09226 0.91319 1.24956 0.96942 0.94646 0.97130 1.69952 1.16095 1.29303 1.37185 0.86266 0.79594 0.78816 0.81813 1.19408 1.20611 1.20625 1.20837 0.94520 0.96321 1.04877 1.20768 0.93167 0.97616 1.00410 0.91370 0.91726 0.91652 0.85806 0.84489 0.75498 0.75079 0.83142 0.86131 0.86119 0.84687 0.93655 0.93675 0.92323 0.85692 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.11 -0.96 5.88 -104.59 -0.62 -1.58 16 3 C -0.10 -1.01 9.69 -39.61 -0.38 -1.40 16 4 C -0.12 -1.41 8.66 -39.39 -0.34 -1.75 16 5 C 0.16 1.86 6.27 -83.69 -0.53 1.34 16 6 N -0.68 -7.50 5.35 -14.22 -0.08 -7.58 16 7 C 0.71 10.01 8.13 -86.92 -0.71 9.30 16 8 O -0.56 -9.26 11.03 5.28 0.06 -9.21 16 9 N -0.67 -9.75 5.23 -14.06 -0.07 -9.82 16 10 C 0.17 2.85 6.49 -83.42 -0.54 2.31 16 11 C -0.12 -2.01 8.76 -39.43 -0.35 -2.35 16 12 C -0.12 -1.78 10.04 -39.55 -0.40 -2.17 16 13 C -0.12 -1.87 10.04 -39.57 -0.40 -2.27 16 14 C -0.11 -2.06 9.36 -39.40 -0.37 -2.43 16 15 C -0.10 -1.84 6.12 -38.91 -0.24 -2.08 16 16 S -0.17 -3.58 20.51 -107.50 -2.20 -5.78 16 17 C 0.08 1.94 4.09 36.01 0.15 2.09 16 18 C -0.52 -13.91 9.13 -34.44 -0.31 -14.22 16 19 H 0.07 1.82 7.71 -52.48 -0.40 1.42 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 21 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 22 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.14 -1.33 9.96 -39.39 -0.39 -1.73 16 27 C -0.10 -0.86 9.69 -39.61 -0.38 -1.24 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.34 8.08 -51.92 -0.42 -0.08 16 30 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 32 H 0.14 1.90 6.44 -52.49 -0.34 1.56 16 33 H 0.41 3.25 8.85 -40.82 -0.36 2.89 16 34 H 0.41 5.44 7.58 -40.82 -0.31 5.13 16 35 H 0.15 2.47 5.53 -52.48 -0.29 2.18 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.14 2.62 5.88 -52.49 -0.31 2.31 16 39 H 0.05 1.17 7.75 -51.93 -0.40 0.77 16 40 H 0.05 1.16 7.75 -51.92 -0.40 0.75 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -30.51 374.43 -11.81 -42.32 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.33 Total: 9.75 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -5.54 Total: -16.77 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.59 Total: -41.50 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.06 Total: -9.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.20 Total: -5.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.51 -11.81 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.943 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds