Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38285 * 119.92915 * 2 1 4 4 C 1.38100 * 120.07761 * 180.02562 * 3 2 1 5 5 C 1.38903 * 119.92492 * 359.97438 * 4 3 2 6 6 N 1.39828 * 120.07483 * 180.02562 * 5 4 3 7 7 C 1.38131 * 120.00496 * 147.12301 * 6 5 4 8 8 N 1.32878 * 120.03866 * 354.30187 * 7 6 5 9 9 C 1.32843 * 119.82273 * 180.02562 * 8 7 6 10 10 N 1.37989 * 120.04059 * 180.02562 * 9 8 7 11 11 N 1.33126 * 119.91169 * 359.97222 * 9 8 7 12 12 C 1.32132 * 120.08729 * 0.02562 * 11 9 8 13 13 C 1.50704 * 119.91460 * 179.97438 * 12 11 9 14 14 N 1.46499 * 109.47444 * 270.02282 * 13 12 11 15 15 C 1.36940 * 120.00282 * 89.99177 * 14 13 12 16 16 H 1.07997 * 119.99365 * 32.41158 * 15 14 13 17 17 C 1.38810 * 120.00262 * 212.41468 * 15 14 13 18 18 N 1.31622 * 119.99857 * 13.66230 * 17 15 14 19 19 Si 1.86802 * 120.00050 * 193.66305 * 17 15 14 20 20 H 1.48506 * 109.46744 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47036 * 119.99674 * 19 17 15 22 22 H 1.48499 * 109.46810 * 239.99756 * 19 17 15 23 23 C 1.46500 * 119.99618 * 270.00152 * 14 13 12 24 24 C 1.53000 * 109.46757 * 301.86870 * 23 14 13 25 25 C 1.52996 * 109.47776 * 61.87353 * 23 14 13 26 26 N 1.32168 * 120.17993 * 0.02562 * 12 11 9 27 27 C 1.38890 * 119.84962 * 0.27326 * 5 4 3 28 28 C 1.38105 * 119.93114 * 359.44778 * 27 5 4 29 29 H 1.08993 * 109.47427 * 89.99836 * 1 2 3 30 30 H 1.08999 * 109.47124 * 210.00011 * 1 2 3 31 31 H 1.09006 * 109.47196 * 330.00109 * 1 2 3 32 32 H 1.08009 * 119.96277 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.04184 * 179.97438 * 4 3 2 34 34 H 0.97005 * 119.99945 * 327.12575 * 6 5 4 35 35 H 0.97008 * 119.99960 * 179.97438 * 10 9 8 36 36 H 0.97006 * 120.00933 * 359.97438 * 10 9 8 37 37 H 1.08997 * 109.46718 * 30.01929 * 13 12 11 38 38 H 1.09004 * 109.47139 * 150.01640 * 13 12 11 39 39 H 0.96999 * 119.99591 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46845 * 181.87669 * 23 14 13 41 41 H 1.08995 * 109.47178 * 60.00841 * 24 23 14 42 42 H 1.09007 * 109.46683 * 180.02562 * 24 23 14 43 43 H 1.09005 * 109.47449 * 300.00074 * 24 23 14 44 44 H 1.09004 * 109.47474 * 59.99456 * 25 23 14 45 45 H 1.08992 * 109.47293 * 180.02562 * 25 23 14 46 46 H 1.09006 * 109.46481 * 300.00164 * 25 23 14 47 47 H 1.08005 * 120.03579 * 179.70345 * 27 5 4 48 48 H 1.08004 * 119.96695 * 180.29704 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2020 -0.0005 5 6 4.2740 0.0000 -0.0005 6 7 5.6723 -0.0001 -0.0005 7 6 6.3630 -1.0047 0.6488 8 7 5.7044 -1.9072 1.3681 9 6 6.3730 -2.8712 1.9912 10 7 5.6936 -3.8110 2.7390 11 7 7.6993 -2.9300 1.8924 12 6 8.3507 -2.0307 1.1762 13 6 9.8521 -2.1006 1.0674 14 7 10.4570 -1.3197 2.1494 15 6 10.7449 -1.9177 3.3472 16 1 11.0344 -2.9578 3.3756 17 6 10.6646 -1.1872 4.5247 18 7 10.0624 -0.0169 4.5333 19 14 11.4113 -1.8649 6.0972 20 1 12.0253 -3.1890 5.8229 21 1 12.4522 -0.9296 6.5941 22 1 10.3496 -2.0153 7.1245 23 6 10.7537 0.1010 1.9499 24 6 11.6987 0.2620 0.7574 25 6 9.4538 0.8601 1.6767 26 7 7.6890 -1.0695 0.5556 27 6 3.5779 -1.2019 -0.0057 28 6 2.1969 -1.1985 0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6551 2.1328 0.0004 33 1 4.1162 2.1383 -0.0010 34 1 6.1573 0.7055 -0.4565 35 1 6.1824 -4.5150 3.1935 36 1 4.7271 -3.7679 2.8103 37 1 10.1740 -3.1391 1.1450 38 1 10.1662 -1.6937 0.1062 39 1 10.0060 0.4935 5.3563 40 1 11.2276 0.5024 2.8457 41 1 11.2250 -0.1394 -0.1384 42 1 11.9198 1.3190 0.6092 43 1 12.6249 -0.2788 0.9520 44 1 8.7805 0.7454 2.5262 45 1 9.6747 1.9170 1.5278 46 1 8.9801 0.4586 0.7808 47 1 4.1161 -2.1383 -0.0106 48 1 1.6551 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095975545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = 131.733249 kcal Electronic energy + Delta-G solvation = -30307.466868 eV Core-core repulsion = 26398.966841 eV Total energy + Delta-G solvation = -3908.500027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.186 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.97232 -39.43540 -36.78084 -36.38398 -34.82047 -32.80943 -31.89863 -31.40970 -30.88131 -30.57649 -30.21200 -26.94811 -26.11763 -25.86257 -23.61159 -23.46765 -22.36046 -22.01951 -20.91987 -19.20356 -18.73927 -17.81667 -16.87904 -16.76680 -15.89622 -15.49333 -15.28977 -15.03540 -14.80624 -14.56787 -14.01452 -13.85555 -13.80427 -13.60952 -13.56759 -13.35445 -13.11599 -12.74936 -12.47982 -12.23657 -11.90873 -11.73559 -11.52328 -11.49172 -11.27111 -11.03762 -10.94128 -10.93354 -10.62716 -10.53708 -10.17639 -9.90586 -9.68028 -9.45594 -9.30018 -8.96103 -8.75756 -8.68129 -8.47525 -8.34022 -7.59752 -6.73057 -5.84730 -3.32350 1.25721 1.47640 1.88156 2.09484 2.88650 3.34861 3.42697 3.45112 3.57158 3.83973 4.42011 4.55238 4.69746 4.82240 4.87911 4.99330 5.08935 5.24524 5.33659 5.43659 5.46266 5.49047 5.53035 5.68837 5.77886 5.94597 6.05562 6.20012 6.35074 6.39471 6.39995 6.46516 6.52255 6.60813 6.64421 6.69980 6.85607 6.86193 6.95363 7.00606 7.10432 7.13270 7.24737 7.28509 7.64116 7.75237 7.82618 7.91414 7.92328 8.08406 8.44755 9.16909 9.24792 9.74625 10.29211 11.20067 Molecular weight = 342.19amu Principal moments of inertia in cm(-1) A = 0.014813 B = 0.003139 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.777903 B = 8916.761539 C = 9470.980517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.116 4.116 3 C -0.100 4.100 4 C -0.150 4.150 5 C 0.173 3.827 6 N -0.635 5.635 7 C 0.611 3.389 8 N -0.654 5.654 9 C 0.617 3.383 10 N -0.815 5.815 11 N -0.609 5.609 12 C 0.422 3.578 13 C 0.199 3.801 14 N -0.557 5.557 15 C -0.248 4.248 16 H 0.071 0.929 17 C 0.009 3.991 18 N -0.887 5.887 19 Si 0.906 3.094 20 H -0.275 1.275 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.182 3.818 24 C -0.162 4.162 25 C -0.158 4.158 26 N -0.615 5.615 27 C -0.111 4.111 28 C -0.102 4.102 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.423 0.577 35 H 0.415 0.585 36 H 0.409 0.591 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.066 0.934 47 H 0.135 0.865 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 -0.942 -10.084 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.119 4.119 4 C -0.172 4.172 5 C 0.077 3.923 6 N -0.265 5.265 7 C 0.246 3.754 8 N -0.395 5.395 9 C 0.249 3.751 10 N -0.365 5.365 11 N -0.342 5.342 12 C 0.144 3.856 13 C 0.069 3.931 14 N -0.276 5.276 15 C -0.378 4.378 16 H 0.089 0.911 17 C -0.191 4.191 18 N -0.529 5.529 19 Si 0.735 3.265 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.076 3.924 24 C -0.221 4.221 25 C -0.217 4.217 26 N -0.348 5.348 27 C -0.132 4.132 28 C -0.120 4.120 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.261 0.739 35 H 0.246 0.754 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.037 0.963 46 H 0.085 0.915 47 H 0.153 0.847 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.051 -0.872 -9.895 17.207 hybrid contribution 0.009 0.030 1.330 1.330 sum -14.042 -0.842 -8.565 16.470 Atomic orbital electron populations 1.20709 0.91548 1.02408 1.01833 1.19811 0.95836 0.93221 1.02901 1.20711 0.93153 0.97455 1.00555 1.20831 0.94457 0.96462 1.05418 1.17626 0.81685 0.94068 0.98924 1.41358 1.03381 1.26465 1.55344 1.18960 0.85853 0.85782 0.84837 1.67939 1.40722 1.09906 1.20906 1.19209 0.85970 0.84998 0.84884 1.41563 1.09759 1.30818 1.54323 1.68559 1.06220 1.32836 1.26606 1.25192 0.99213 0.80554 0.80594 1.20155 0.80836 0.97921 0.94181 1.44352 1.64415 1.07073 1.11712 1.19301 1.38580 0.96751 0.83184 0.91095 1.25262 0.98477 0.97520 0.97869 1.70039 1.42846 1.13528 1.26538 0.86175 0.78449 0.78586 0.83259 1.19965 1.21555 1.21838 1.20377 0.92958 0.82915 0.96154 1.22327 1.00319 0.99336 1.00124 1.22342 1.00108 0.96852 1.02419 1.68465 1.05668 1.28982 1.31698 1.21152 0.93762 0.97790 1.00489 1.20844 0.93521 0.97315 1.00356 0.91658 0.91874 0.91912 0.86102 0.85889 0.73873 0.75382 0.76128 0.90820 0.91126 0.93698 0.88738 0.93957 0.94131 0.93526 0.92391 0.96254 0.91501 0.84689 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 2 C -0.12 -1.26 5.88 -104.59 -0.62 -1.87 16 3 C -0.10 -1.10 9.69 -39.61 -0.38 -1.48 16 4 C -0.15 -1.85 9.96 -39.39 -0.39 -2.24 16 5 C 0.17 2.48 6.29 -83.72 -0.53 1.95 16 6 N -0.64 -9.87 5.47 -11.51 -0.06 -9.93 16 7 C 0.61 11.58 8.20 -321.94 -2.64 8.94 16 8 N -0.65 -12.23 7.28 -14.72 -0.11 -12.34 16 9 C 0.62 11.76 8.76 -322.14 -2.82 8.94 16 10 N -0.81 -11.56 9.05 29.85 0.27 -11.29 16 11 N -0.61 -13.09 10.46 -11.52 -0.12 -13.21 16 12 C 0.42 9.14 6.74 -156.58 -1.06 8.08 16 13 C 0.20 4.21 5.64 -5.19 -0.03 4.18 16 14 N -0.56 -13.43 2.39 -167.02 -0.40 -13.83 16 15 C -0.25 -6.57 9.56 -15.06 -0.14 -6.71 16 16 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16 17 C 0.01 0.24 4.95 -17.43 -0.09 0.16 16 18 N -0.89 -25.15 10.21 55.49 0.57 -24.58 16 19 Si 0.91 21.54 29.58 -169.99 -5.03 16.52 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.18 4.23 2.37 -67.93 -0.16 4.06 16 24 C -0.16 -3.12 9.14 37.16 0.34 -2.78 16 25 C -0.16 -3.62 8.25 37.16 0.31 -3.32 16 26 N -0.62 -12.51 7.47 -11.48 -0.09 -12.59 16 27 C -0.11 -1.54 8.57 -39.39 -0.34 -1.88 16 28 C -0.10 -1.19 9.69 -39.61 -0.38 -1.57 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.42 5.79 8.93 -40.82 -0.36 5.42 16 35 H 0.41 5.28 8.95 -40.82 -0.37 4.91 16 36 H 0.41 4.73 8.95 -40.82 -0.37 4.37 16 37 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 38 H 0.07 1.36 6.33 -51.93 -0.33 1.03 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.09 2.52 5.94 -51.93 -0.31 2.21 16 41 H 0.04 0.76 6.60 -51.93 -0.34 0.42 16 42 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.56 7.29 -51.93 -0.38 1.18 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 1.45 5.00 -51.93 -0.26 1.19 16 47 H 0.14 2.05 6.27 -52.48 -0.33 1.72 16 48 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -31.33 388.33 -14.49 -45.82 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -6.81 Total: 15.61 kcal Atomic # 6 Polarization: 22.55 SS G_CDS: -8.57 Total: 13.98 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: 0.06 Total: -97.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.33 -14.49 -45.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095975545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.555 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds