Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28712 * 124.72679 * 2 1 4 4 C 1.32617 * 117.13541 * 180.02562 * 3 2 1 5 5 C 1.48074 * 122.99333 * 180.02562 * 4 3 2 6 6 N 1.30698 * 126.43900 * 155.07258 * 5 4 3 7 7 O 1.41306 * 109.62869 * 179.97438 * 6 5 4 8 8 C 1.34794 * 109.61255 * 359.97438 * 7 6 5 9 9 C 1.39243 * 133.02738 * 180.02562 * 8 7 6 10 10 C 1.36396 * 120.25098 * 179.97438 * 9 8 7 11 11 C 1.40114 * 120.57275 * 0.27593 * 10 9 8 12 12 C 1.47678 * 120.00038 * 179.72440 * 11 10 9 13 13 O 1.21579 * 120.00156 * 180.02562 * 12 11 10 14 14 N 1.34775 * 119.99967 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00248 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47367 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00278 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99673 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00371 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46986 * 90.00110 * 20 18 16 22 22 H 1.48501 * 109.47512 * 210.00431 * 20 18 16 23 23 H 1.48498 * 109.47069 * 330.00761 * 20 18 16 24 24 C 1.39211 * 119.99989 * 359.42725 * 11 10 9 25 25 C 1.39125 * 119.44170 * 0.58300 * 24 11 10 26 26 C 1.35023 * 114.00678 * 0.27389 * 4 3 2 27 27 S 1.70907 * 124.72765 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47234 * 89.99768 * 1 2 3 29 29 H 1.08998 * 109.47130 * 209.99245 * 1 2 3 30 30 H 1.08993 * 109.46846 * 329.99282 * 1 2 3 31 31 H 1.07997 * 119.86983 * 0.02562 * 9 8 7 32 32 H 1.08002 * 119.70970 * 179.97438 * 10 9 8 33 33 H 0.97001 * 119.99938 * 0.02562 * 14 12 11 34 34 H 1.09003 * 109.46761 * 300.00685 * 15 14 12 35 35 H 1.08997 * 109.46970 * 60.00139 * 15 14 12 36 36 H 0.96996 * 119.99811 * 179.97438 * 19 18 16 37 37 H 1.07990 * 120.27745 * 180.29727 * 24 11 10 38 38 H 1.08003 * 126.07061 * 179.69414 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2403 1.0579 0.0000 4 6 3.5548 0.8827 -0.0005 5 6 4.5181 2.0072 0.0000 6 7 5.7475 1.9761 0.4427 7 8 6.3462 3.2445 0.2706 8 6 5.4619 4.0889 -0.2968 9 6 5.5346 5.4267 -0.6761 10 6 4.4560 6.0399 -1.2427 11 6 3.2613 5.3364 -1.4453 12 6 2.0993 6.0145 -2.0542 13 8 1.0625 5.4042 -2.2296 14 7 2.1878 7.3101 -2.4146 15 6 1.0353 7.9827 -3.0193 16 6 1.3934 9.4137 -3.3273 17 1 2.3809 9.7850 -3.0962 18 6 0.4607 10.2488 -3.9051 19 7 -0.7417 9.7965 -4.1869 20 14 0.9043 12.0228 -4.2863 21 1 1.4655 12.1088 -5.6585 22 1 -0.3132 12.8681 -4.1955 23 1 1.9136 12.5018 -3.3080 24 6 3.1717 3.9966 -1.0782 25 6 4.2716 3.3709 -0.5000 26 6 3.9364 -0.4125 -0.0069 27 16 2.4807 -1.4046 -0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 6.4488 5.9807 -0.5218 32 1 4.5219 7.0780 -1.5332 33 1 3.0149 7.7972 -2.2744 34 1 0.7586 7.4712 -3.9412 35 1 0.1955 7.9594 -2.3248 36 1 -1.3979 10.3840 -4.5931 37 1 2.2546 3.4488 -1.2367 38 1 4.9535 -0.7758 -0.0131 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096037871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = 72.782120 kcal Electronic energy + Delta-G solvation = -25464.859336 eV Core-core repulsion = 21594.878265 eV Total energy + Delta-G solvation = -3869.981071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 343.078 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01899 -40.14579 -39.29476 -37.12774 -34.65086 -34.30139 -32.46719 -32.20626 -30.70203 -30.49690 -28.58788 -27.30075 -25.54083 -24.10256 -23.18218 -22.26942 -21.73316 -20.20832 -20.01031 -18.58986 -18.02014 -17.21692 -16.50858 -16.27638 -15.85446 -15.67219 -15.39316 -15.18168 -14.73983 -14.51392 -14.41958 -14.02663 -13.91688 -13.73294 -13.17056 -13.10874 -12.82832 -12.57611 -12.39774 -12.36380 -12.04156 -11.81027 -11.70106 -11.58106 -11.25524 -11.00970 -10.91169 -10.35015 -10.11088 -9.92063 -9.43924 -9.34374 -9.27850 -9.14722 -8.78117 -8.65112 -7.93566 -6.19481 -4.26699 -0.05411 0.50110 0.78657 0.79954 1.14548 1.53382 2.10350 2.56073 3.05341 3.22831 3.27459 3.29199 3.31264 3.79157 3.97359 3.99420 4.09620 4.32380 4.41067 4.68536 4.75589 4.84226 4.94858 5.00651 5.05171 5.14821 5.16942 5.21242 5.41059 5.42833 5.65212 5.71523 5.92658 6.04675 6.18051 6.36617 6.88226 7.21708 7.26114 7.33742 7.47510 7.61611 7.92907 8.53208 8.72292 8.98997 9.39744 10.90721 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002433 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.977305 B =11503.668746 C =13274.269558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.062 3.938 3 N -0.450 5.450 4 C 0.120 3.880 5 C 0.213 3.787 6 N -0.281 5.281 7 O -0.081 6.081 8 C 0.097 3.903 9 C -0.131 4.131 10 C -0.028 4.028 11 C -0.152 4.152 12 C 0.544 3.456 13 O -0.548 6.548 14 N -0.704 5.704 15 C 0.249 3.751 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.031 3.969 25 C -0.188 4.188 26 C -0.218 4.218 27 S 0.156 5.844 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.390 0.610 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.153 0.847 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.478 -21.275 9.353 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.218 4.218 3 N -0.165 5.165 4 C -0.013 4.013 5 C 0.033 3.967 6 N -0.023 5.023 7 O -0.093 6.093 8 C 0.043 3.957 9 C -0.151 4.151 10 C -0.048 4.048 11 C -0.156 4.156 12 C 0.329 3.671 13 O -0.427 6.427 14 N -0.352 5.352 15 C 0.129 3.871 16 C -0.583 4.583 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.010 3.990 25 C -0.192 4.192 26 C -0.361 4.361 27 S 0.412 5.588 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.224 0.776 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.171 0.829 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.089 -22.837 9.708 26.427 hybrid contribution 0.773 2.357 -0.493 2.529 sum 9.862 -20.480 9.215 24.527 Atomic orbital electron populations 1.20568 0.84171 1.04769 1.04755 1.27054 1.02256 0.90335 1.02161 1.66023 1.03083 1.31811 1.15582 1.17220 0.88290 0.89147 1.06597 1.21556 0.91125 0.91340 0.92688 1.80151 1.07485 0.95535 1.19179 1.89115 1.33650 1.16697 1.69821 1.20409 0.88616 0.92996 0.93659 1.19673 1.01172 0.89774 1.04461 1.21133 0.90725 1.00187 0.92785 1.20200 0.95642 0.94582 1.05164 1.17982 0.86911 0.82807 0.79430 1.90752 1.30377 1.65531 1.56082 1.46415 1.18076 1.09947 1.60765 1.19171 0.83117 0.91268 0.93553 1.21203 0.99391 0.95094 1.42593 0.91844 1.24947 0.94720 0.99177 0.95128 1.69973 1.04292 1.36423 1.41507 0.86407 0.78023 0.83664 0.78780 1.20441 1.20988 1.19715 1.20894 0.96898 0.92661 0.88512 1.20325 0.96780 0.91568 1.10554 1.27265 1.04423 0.95351 1.09014 1.84040 0.95982 1.11893 1.66926 0.88777 0.89745 0.88509 0.83668 0.83427 0.77630 0.95247 0.95205 0.92396 0.82904 0.79570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.01 0.38 -0.15 16 2 C 0.06 0.57 7.36 -13.58 -0.10 0.47 16 3 N -0.45 -5.63 10.29 -8.46 -0.09 -5.71 16 4 C 0.12 1.47 6.69 -84.64 -0.57 0.90 16 5 C 0.21 2.96 7.21 -80.62 -0.58 2.38 16 6 N -0.28 -3.92 12.82 34.59 0.44 -3.48 16 7 O -0.08 -1.14 12.04 7.78 0.09 -1.05 16 8 C 0.10 1.33 7.47 -38.36 -0.29 1.05 16 9 C -0.13 -1.51 10.00 -39.87 -0.40 -1.91 16 10 C -0.03 -0.36 9.46 -39.54 -0.37 -0.73 16 11 C -0.15 -2.45 5.87 -104.98 -0.62 -3.07 16 12 C 0.54 11.05 7.77 -12.41 -0.10 10.95 16 13 O -0.55 -13.20 16.33 5.30 0.09 -13.11 16 14 N -0.70 -14.57 5.50 -62.48 -0.34 -14.91 16 15 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 16 C -0.54 -14.44 9.28 -34.44 -0.32 -14.76 16 17 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.68 13.29 55.43 0.74 -24.94 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C 0.03 0.50 9.64 -38.89 -0.37 0.12 16 25 C -0.19 -2.77 6.31 -105.02 -0.66 -3.43 16 26 C -0.22 -2.01 11.17 29.59 0.33 -1.68 16 27 S 0.16 1.09 23.16 -107.50 -2.49 -1.40 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.15 1.52 6.37 -52.49 -0.33 1.19 16 33 H 0.39 6.72 6.33 -40.82 -0.26 6.47 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.15 2.57 7.39 -52.49 -0.39 2.19 16 38 H 0.19 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -33.71 356.68 -8.47 -42.18 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.47 Total: 3.32 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.79 Total: -1.76 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.75 Total: -49.04 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.18 Total: -14.16 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.71 -8.47 -42.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096037871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.965 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds