Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.28712 * 124.72679 * 2 1 4 4 C 1.32617 * 117.13541 * 180.02562 * 3 2 1 5 5 C 1.48074 * 122.99333 * 180.02562 * 4 3 2 6 6 N 1.30698 * 126.43900 * 155.07258 * 5 4 3 7 7 O 1.41306 * 109.62869 * 179.97438 * 6 5 4 8 8 C 1.34794 * 109.61255 * 359.97438 * 7 6 5 9 9 C 1.39243 * 133.02738 * 180.02562 * 8 7 6 10 10 C 1.36396 * 120.25098 * 179.97438 * 9 8 7 11 11 C 1.40114 * 120.57275 * 0.27593 * 10 9 8 12 12 C 1.47678 * 120.00038 * 179.72440 * 11 10 9 13 13 O 1.21579 * 120.00156 * 180.02562 * 12 11 10 14 14 N 1.34775 * 119.99967 * 359.97438 * 12 11 10 15 15 C 1.46503 * 120.00248 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47367 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00278 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99673 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00371 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46986 * 90.00110 * 20 18 16 22 22 H 1.48501 * 109.47512 * 210.00431 * 20 18 16 23 23 H 1.48498 * 109.47069 * 330.00761 * 20 18 16 24 24 C 1.39211 * 119.99989 * 359.42725 * 11 10 9 25 25 C 1.39125 * 119.44170 * 0.58300 * 24 11 10 26 26 C 1.35023 * 114.00678 * 0.27389 * 4 3 2 27 27 S 1.70907 * 124.72765 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47234 * 89.99768 * 1 2 3 29 29 H 1.08998 * 109.47130 * 209.99245 * 1 2 3 30 30 H 1.08993 * 109.46846 * 329.99282 * 1 2 3 31 31 H 1.07997 * 119.86983 * 0.02562 * 9 8 7 32 32 H 1.08002 * 119.70970 * 179.97438 * 10 9 8 33 33 H 0.97001 * 119.99938 * 0.02562 * 14 12 11 34 34 H 1.09003 * 109.46761 * 300.00685 * 15 14 12 35 35 H 1.08997 * 109.46970 * 60.00139 * 15 14 12 36 36 H 0.96996 * 119.99811 * 179.97438 * 19 18 16 37 37 H 1.07990 * 120.27745 * 180.29727 * 24 11 10 38 38 H 1.08003 * 126.07061 * 179.69414 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2403 1.0579 0.0000 4 6 3.5548 0.8827 -0.0005 5 6 4.5181 2.0072 0.0000 6 7 5.7475 1.9761 0.4427 7 8 6.3462 3.2445 0.2706 8 6 5.4619 4.0889 -0.2968 9 6 5.5346 5.4267 -0.6761 10 6 4.4560 6.0399 -1.2427 11 6 3.2613 5.3364 -1.4453 12 6 2.0993 6.0145 -2.0542 13 8 1.0625 5.4042 -2.2296 14 7 2.1878 7.3101 -2.4146 15 6 1.0353 7.9827 -3.0193 16 6 1.3934 9.4137 -3.3273 17 1 2.3809 9.7850 -3.0962 18 6 0.4607 10.2488 -3.9051 19 7 -0.7417 9.7965 -4.1869 20 14 0.9043 12.0228 -4.2863 21 1 1.4655 12.1088 -5.6585 22 1 -0.3132 12.8681 -4.1955 23 1 1.9136 12.5018 -3.3080 24 6 3.1717 3.9966 -1.0782 25 6 4.2716 3.3709 -0.5000 26 6 3.9364 -0.4125 -0.0069 27 16 2.4807 -1.4046 -0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 6.4488 5.9807 -0.5218 32 1 4.5219 7.0780 -1.5332 33 1 3.0149 7.7972 -2.2744 34 1 0.7586 7.4712 -3.9412 35 1 0.1955 7.9594 -2.3248 36 1 -1.3979 10.3840 -4.5931 37 1 2.2546 3.4488 -1.2367 38 1 4.9535 -0.7758 -0.0131 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096037871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = 49.535345 kcal Electronic energy + Delta-G solvation = -25465.867392 eV Core-core repulsion = 21594.878265 eV Total energy + Delta-G solvation = -3870.989127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 343.078 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.08244 -40.97658 -40.80451 -38.43175 -36.25478 -35.58068 -34.42389 -32.97594 -31.83018 -31.73826 -29.30089 -29.21990 -26.39944 -25.64537 -24.28728 -23.94927 -22.59231 -21.75249 -20.85951 -19.85144 -19.19780 -18.26272 -18.02424 -17.49543 -17.33507 -16.76192 -16.49311 -16.46137 -16.19957 -16.10312 -15.38771 -15.33716 -14.98480 -14.69097 -14.36380 -14.11772 -14.09966 -13.98221 -13.78704 -13.25469 -13.23637 -13.08919 -12.92019 -12.80156 -12.69897 -12.55202 -12.31487 -12.21208 -11.47876 -11.03257 -10.82655 -10.79869 -10.61337 -10.31482 -10.13358 -9.89078 -9.63190 -8.27582 -6.44039 -0.91535 -0.48161 -0.33338 0.13905 0.43188 0.57044 1.10467 1.45828 1.47948 1.59038 1.59997 1.80309 2.22737 2.39501 2.48335 2.60108 2.92441 3.07967 3.22699 3.40879 3.68080 3.83264 3.89060 3.99746 4.09596 4.11051 4.28270 4.48515 4.64564 4.71222 4.73018 4.82717 4.89557 5.04228 5.12970 5.13697 5.24115 5.25727 5.44601 5.66397 5.84163 5.84485 6.50014 6.65004 6.81019 7.22390 7.38161 8.84734 Molecular weight = 343.08amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002433 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.977305 B =11503.668746 C =13274.269558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.041 3.959 3 N -0.493 5.493 4 C 0.084 3.916 5 C 0.214 3.786 6 N -0.288 5.288 7 O -0.085 6.085 8 C 0.099 3.901 9 C -0.110 4.110 10 C -0.018 4.018 11 C -0.166 4.166 12 C 0.544 3.456 13 O -0.595 6.595 14 N -0.695 5.695 15 C 0.266 3.734 16 C -0.555 4.555 17 H 0.088 0.912 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.984 3.016 21 H -0.271 1.271 22 H -0.286 1.286 23 H -0.253 1.253 24 C 0.026 3.974 25 C -0.204 4.204 26 C -0.216 4.216 27 S 0.243 5.757 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.190 0.810 32 H 0.177 0.823 33 H 0.410 0.590 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.269 0.731 37 H 0.132 0.868 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.168 -21.195 9.974 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.238 4.238 3 N -0.209 5.209 4 C -0.048 4.048 5 C 0.034 3.966 6 N -0.032 5.032 7 O -0.096 6.096 8 C 0.044 3.956 9 C -0.129 4.129 10 C -0.037 4.037 11 C -0.170 4.170 12 C 0.332 3.668 13 O -0.478 6.478 14 N -0.345 5.345 15 C 0.143 3.857 16 C -0.592 4.592 17 H 0.106 0.894 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.808 3.192 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.177 1.177 24 C 0.004 3.996 25 C -0.208 4.208 26 C -0.360 4.360 27 S 0.499 5.501 28 H 0.117 0.883 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.207 0.793 32 H 0.194 0.806 33 H 0.247 0.753 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 11.832 -22.765 10.351 27.665 hybrid contribution -0.091 2.099 -0.645 2.198 sum 11.742 -20.665 9.705 25.673 Atomic orbital electron populations 1.20709 0.82746 1.05637 1.05314 1.27524 1.03490 0.91200 1.01616 1.66009 1.03636 1.33999 1.17282 1.17281 0.88297 0.89757 1.09504 1.21860 0.91345 0.91629 0.91791 1.80126 1.07629 0.95489 1.19979 1.89094 1.33779 1.16893 1.69845 1.20774 0.87978 0.93729 0.93074 1.20096 1.02083 0.88750 1.02011 1.21359 0.89244 1.01155 0.91945 1.19812 0.95426 0.94698 1.07033 1.18595 0.87565 0.82330 0.78301 1.90721 1.32743 1.66492 1.57862 1.46066 1.17523 1.10240 1.60647 1.18631 0.83944 0.91913 0.91197 1.21609 1.00479 0.94922 1.42226 0.89386 1.26057 0.94400 1.04416 0.94704 1.70141 1.05779 1.38455 1.42597 0.85158 0.77924 0.77099 0.79064 1.19653 1.21182 1.17695 1.20694 0.96767 0.92716 0.89374 1.20452 0.96887 0.92531 1.10943 1.27632 1.06523 0.95029 1.06781 1.83697 0.93050 1.08758 1.64571 0.88301 0.86648 0.89895 0.79327 0.80556 0.75259 0.99069 0.99058 0.92265 0.85011 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.46 71.24 0.75 -0.32 16 2 C 0.04 0.74 7.36 88.57 0.65 1.39 16 3 N -0.49 -12.87 10.29 -180.68 -1.86 -14.73 16 4 C 0.08 2.08 6.69 40.90 0.27 2.36 16 5 C 0.21 6.02 7.21 44.32 0.32 6.34 16 6 N -0.29 -7.91 12.82 -44.48 -0.57 -8.48 16 7 O -0.09 -2.29 12.04 30.25 0.36 -1.93 16 8 C 0.10 2.55 7.47 23.06 0.17 2.72 16 9 C -0.11 -2.19 10.00 22.08 0.22 -1.97 16 10 C -0.02 -0.40 9.46 22.30 0.21 -0.19 16 11 C -0.17 -5.40 5.87 -20.09 -0.12 -5.52 16 12 C 0.54 23.04 7.77 86.74 0.67 23.71 16 13 O -0.60 -30.78 16.33 -3.96 -0.06 -30.85 16 14 N -0.69 -29.26 5.50 -469.86 -2.58 -31.84 16 15 C 0.27 14.42 5.43 85.63 0.46 14.88 16 16 C -0.55 -29.43 9.28 25.60 0.24 -29.19 16 17 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 18 C 0.00 0.21 5.46 84.65 0.46 0.67 16 19 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 20 Si 0.98 41.49 29.54 68.60 2.03 43.52 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 24 C 0.03 0.85 9.64 22.72 0.22 1.07 16 25 C -0.20 -6.08 6.31 -20.12 -0.13 -6.21 16 26 C -0.22 -3.76 11.17 67.08 0.75 -3.01 16 27 S 0.24 2.92 23.16 -56.49 -1.31 1.61 16 28 H 0.10 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.18 2.98 6.37 -2.91 -0.02 2.96 16 33 H 0.41 13.60 6.33 -92.71 -0.59 13.01 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.13 4.88 7.39 -2.92 -0.02 4.86 16 38 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -78.25 356.68 2.00 -76.24 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.56 Total: 15.01 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 5.16 Total: 6.75 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.73 Total: -110.36 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: 0.30 Total: -32.77 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.31 Total: 1.61 kcal Total: -78.25 2.00 -76.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096037871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.779 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds