Wall clock time and date at job start Tue Mar 31 2020 06:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.45642 * 117.93067 * 2 1 4 4 C 1.52931 * 111.22370 * 156.78581 * 3 2 1 5 5 N 1.47485 * 108.27156 * 47.17664 * 4 3 2 6 6 C 1.36931 * 121.41791 * 120.49794 * 5 4 3 7 7 H 1.08000 * 120.00137 * 209.93341 * 6 5 4 8 8 C 1.38808 * 120.00130 * 29.93427 * 6 5 4 9 9 N 1.31613 * 120.00160 * 16.34563 * 8 6 5 10 10 Si 1.86801 * 120.00131 * 196.62316 * 8 6 5 11 11 H 1.48503 * 109.47328 * 179.72286 * 10 8 6 12 12 H 1.48500 * 109.47123 * 299.72307 * 10 8 6 13 13 H 1.48504 * 109.47171 * 59.72055 * 10 8 6 14 14 C 1.46055 * 117.16639 * 300.76743 * 5 4 3 15 15 C 1.54272 * 110.54221 * 276.96008 * 14 5 4 16 16 C 1.54472 * 102.86573 * 276.41312 * 15 14 5 17 17 N 1.47089 * 107.29775 * 338.58542 * 16 15 14 18 18 S 1.65595 * 125.63226 * 179.00780 * 17 16 15 19 19 O 1.42095 * 104.27906 * 206.09560 * 18 17 16 20 20 O 1.42103 * 104.27863 * 333.95343 * 18 17 16 21 21 C 1.81404 * 104.45190 * 90.02321 * 18 17 16 22 22 C 1.52996 * 117.49817 * 253.75050 * 21 18 17 23 23 C 1.52993 * 117.50047 * 185.08765 * 21 18 17 24 24 C 1.47602 * 108.74009 * 359.02817 * 17 16 15 25 25 C 1.33791 * 117.92956 * 180.02562 * 2 1 3 26 26 O 1.21283 * 118.80715 * 4.68241 * 25 2 1 27 27 H 1.09002 * 109.46879 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46958 * 120.00173 * 1 2 3 29 29 H 1.08992 * 109.47421 * 240.00219 * 1 2 3 30 30 H 1.09003 * 109.13039 * 36.33013 * 3 2 1 31 31 H 1.09008 * 109.12734 * 277.23387 * 3 2 1 32 32 H 1.09002 * 109.70300 * 287.48361 * 4 3 2 33 33 H 1.09007 * 109.74008 * 166.89408 * 4 3 2 34 34 H 0.96995 * 120.00616 * 179.97438 * 9 8 6 35 35 H 1.08998 * 110.73624 * 34.76166 * 15 14 5 36 36 H 1.09007 * 110.73601 * 158.06776 * 15 14 5 37 37 H 1.09006 * 109.88107 * 98.00851 * 16 15 14 38 38 H 1.09004 * 109.88107 * 219.15783 * 16 15 14 39 39 H 1.09007 * 115.54724 * 39.41902 * 21 18 17 40 40 H 1.08992 * 117.50155 * 359.97438 * 22 21 18 41 41 H 1.09008 * 117.49562 * 145.02104 * 22 21 18 42 42 H 1.08999 * 117.49721 * 214.98098 * 23 21 18 43 43 H 1.09003 * 117.49945 * 359.97438 * 23 21 18 44 44 H 1.08996 * 110.37537 * 264.36960 * 24 17 16 45 45 H 1.09000 * 110.37328 * 142.02941 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1473 1.2868 0.0000 4 6 3.5641 1.1622 0.5619 5 7 4.2144 0.0025 -0.0764 6 6 5.3652 0.1413 -0.8055 7 1 5.5687 -0.5305 -1.6262 8 6 6.2701 1.1454 -0.4896 9 7 6.2006 1.7508 0.6769 10 14 7.5816 1.6427 -1.7233 11 1 8.4114 2.7333 -1.1512 12 1 8.4437 0.4726 -2.0280 13 1 6.9323 2.1175 -2.9717 14 6 3.5755 -1.2993 0.0972 15 6 3.9850 -1.9279 1.4452 16 6 5.3390 -2.5949 1.1165 17 7 5.3840 -2.7988 -0.3395 18 16 6.6459 -3.4620 -1.1821 19 8 6.5269 -2.9078 -2.4851 20 8 7.7846 -3.1970 -0.3744 21 6 6.2861 -5.2398 -1.2113 22 6 7.1266 -6.1455 -0.3091 23 6 7.3399 -6.1639 -1.8247 24 6 4.1190 -2.3142 -0.9255 25 6 2.0917 -1.1821 -0.0005 26 8 1.4296 -2.1945 -0.0877 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3634 -0.5137 0.8899 30 1 1.5816 1.9910 0.6101 31 1 2.2000 1.6631 -1.0217 32 1 3.5197 1.0110 1.6405 33 1 4.1288 2.0680 0.3408 34 1 6.8332 2.4522 0.8978 35 1 4.1086 -1.1591 2.2079 36 1 3.2546 -2.6727 1.7615 37 1 6.1573 -1.9443 1.4251 38 1 5.4131 -3.5548 1.6277 39 1 5.2387 -5.5052 -1.3556 40 1 7.8959 -5.6733 0.3017 41 1 6.6322 -7.0071 0.1399 42 1 6.9859 -7.0374 -2.3722 43 1 8.2493 -5.7036 -2.2112 44 1 3.4181 -3.1395 -1.0507 45 1 4.3063 -1.8260 -1.8819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096076932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:13 Heat of formation + Delta-G solvation = -21.438162 kcal Electronic energy + Delta-G solvation = -30828.094979 eV Core-core repulsion = 26782.552384 eV Total energy + Delta-G solvation = -4045.542595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.28106 -37.53622 -37.16201 -36.54354 -35.97595 -35.49007 -33.92956 -31.63069 -29.80034 -29.08272 -27.83033 -26.10251 -24.55578 -23.44769 -22.75000 -22.04228 -21.80773 -21.05625 -18.49397 -17.96775 -17.51224 -16.98019 -16.60330 -16.26215 -15.56583 -15.52070 -15.30288 -14.96373 -14.50423 -14.26945 -13.63685 -13.38310 -13.34543 -13.09447 -13.03174 -12.85167 -12.51771 -12.16349 -11.95103 -11.90151 -11.73071 -11.64135 -11.59567 -11.38684 -11.16166 -11.12223 -11.08203 -10.95501 -10.85628 -10.64088 -10.53538 -10.41428 -10.28866 -10.04935 -9.91296 -9.29028 -8.53769 -8.34057 -8.21930 -6.84347 -5.90403 -3.36088 0.58635 2.89056 3.09364 3.29328 3.42451 3.45286 3.52566 3.54933 4.15704 4.38299 4.42624 4.52901 4.73104 4.83778 5.03426 5.09571 5.22480 5.27552 5.29845 5.45909 5.50239 5.55392 5.63238 5.65948 5.73939 5.78129 5.80607 5.97859 6.03663 6.06524 6.10906 6.14986 6.35056 6.39941 6.55830 6.66803 6.82397 6.83592 6.95163 6.95582 7.32109 7.79298 7.92559 8.26300 8.64969 9.05690 9.66267 10.21080 11.18572 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.006179 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.019943 B = 4530.207340 C = 6355.698908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.602 5.602 3 C 0.089 3.911 4 C 0.149 3.851 5 N -0.568 5.568 6 C -0.253 4.253 7 H 0.077 0.923 8 C 0.015 3.985 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.289 1.289 12 H -0.276 1.276 13 H -0.280 1.280 14 C 0.175 3.825 15 C -0.129 4.129 16 C 0.144 3.856 17 N -0.988 5.988 18 S 2.654 3.346 19 O -0.945 6.945 20 O -0.946 6.946 21 C -0.694 4.694 22 C -0.127 4.127 23 C -0.132 4.132 24 C 0.140 3.860 25 C 0.529 3.471 26 O -0.565 6.565 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.114 0.886 34 H 0.257 0.743 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.156 0.844 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 -9.220 0.561 10.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.334 5.334 3 C -0.035 4.035 4 C 0.023 3.977 5 N -0.290 5.290 6 C -0.381 4.381 7 H 0.095 0.905 8 C -0.184 4.184 9 N -0.542 5.542 10 Si 0.722 3.278 11 H -0.214 1.214 12 H -0.202 1.202 13 H -0.206 1.206 14 C 0.080 3.920 15 C -0.172 4.172 16 C 0.019 3.981 17 N -0.826 5.826 18 S 2.745 3.255 19 O -0.936 6.936 20 O -0.936 6.936 21 C -0.800 4.800 22 C -0.164 4.164 23 C -0.171 4.171 24 C 0.014 3.986 25 C 0.317 3.683 26 O -0.444 6.444 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.132 0.868 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.174 0.826 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.087 0.913 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.281 -9.164 0.141 10.116 hybrid contribution 0.027 -0.084 -0.345 0.356 sum -4.253 -9.248 -0.203 10.181 Atomic orbital electron populations 1.21602 0.81017 1.01515 1.01772 1.47355 1.06484 1.06998 1.72516 1.22340 0.96803 0.82922 1.01463 1.21323 0.87515 0.94311 0.94503 1.43950 1.26317 0.98647 1.60040 1.19120 0.95646 1.15511 1.07868 0.90505 1.25009 0.97011 1.00614 0.95794 1.69936 1.38045 1.27046 1.19173 0.86492 0.81795 0.78437 0.81106 1.21424 1.20189 1.20605 1.20215 0.87473 0.89489 0.94788 1.22971 0.96042 0.99673 0.98471 1.21484 0.99275 0.98605 0.78715 1.58100 1.32543 1.74742 1.17235 1.03639 0.72903 0.75213 0.73726 1.93576 1.85906 1.74482 1.39594 1.93573 1.47769 1.82815 1.69449 1.32946 1.06945 1.23507 1.16578 1.22813 1.00255 1.00101 0.93274 1.22726 0.97192 1.00230 0.96905 1.21806 0.83829 0.95407 0.97576 1.20246 0.90797 0.82407 0.74891 1.90608 1.67099 1.35363 1.51321 0.91265 0.92560 0.92702 0.91859 0.92281 0.95138 0.86801 0.93338 0.89776 0.91605 0.90145 0.93148 0.82612 0.86490 0.87258 0.87023 0.87720 0.91345 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 9.81 59.85 0.59 1.75 16 2 N -0.60 -10.50 3.21 -183.23 -0.59 -11.09 16 3 C 0.09 1.51 6.44 -4.54 -0.03 1.48 16 4 C 0.15 3.11 5.58 -3.54 -0.02 3.09 16 5 N -0.57 -12.92 2.66 -158.72 -0.42 -13.34 16 6 C -0.25 -6.52 8.30 -15.06 -0.12 -6.64 16 7 H 0.08 2.07 5.86 -52.49 -0.31 1.76 16 8 C 0.02 0.40 4.97 -17.43 -0.09 0.32 16 9 N -0.90 -24.15 11.22 55.49 0.62 -23.53 16 10 Si 0.89 22.08 29.59 -169.99 -5.03 17.05 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.17 3.57 0.82 -132.76 -0.11 3.46 16 15 C -0.13 -2.40 6.04 -25.29 -0.15 -2.55 16 16 C 0.14 2.65 6.74 -2.95 -0.02 2.63 16 17 N -0.99 -18.83 2.90 -111.68 -0.32 -19.16 16 18 S 2.65 49.01 6.01 -107.50 -0.65 48.37 16 19 O -0.95 -20.39 17.22 -57.54 -0.99 -21.38 16 20 O -0.95 -19.76 16.91 -57.54 -0.97 -20.74 16 21 C -0.69 -9.06 6.59 -26.74 -0.18 -9.23 16 22 C -0.13 -1.37 10.17 -26.69 -0.27 -1.64 16 23 C -0.13 -1.42 10.30 -26.70 -0.27 -1.69 16 24 C 0.14 2.77 5.30 -2.92 -0.02 2.75 16 25 C 0.53 10.43 6.44 -12.16 -0.08 10.35 16 26 O -0.56 -11.76 15.74 5.55 0.09 -11.67 16 27 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 28 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.88 7.91 -51.93 -0.41 0.47 16 31 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.03 0.65 7.84 -51.93 -0.41 0.24 16 33 H 0.11 2.63 5.96 -51.93 -0.31 2.32 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.08 1.62 7.82 -51.93 -0.41 1.22 16 36 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.16 1.81 8.14 -51.92 -0.42 1.39 16 40 H 0.12 1.30 7.68 -51.93 -0.40 0.90 16 41 H 0.11 0.92 8.14 -51.92 -0.42 0.50 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.23 7.34 -51.93 -0.38 0.85 16 45 H 0.09 1.99 6.12 -51.93 -0.32 1.67 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -32.56 367.98 -10.18 -42.73 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.69 Total: 3.13 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.77 Total: 4.07 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -0.71 Total: -67.11 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -1.88 Total: -53.78 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Atomic # 16 Polarization: 49.01 SS G_CDS: -0.65 Total: 48.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.56 -10.18 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096076932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.296 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds