Wall clock time and date at job start Tue Mar 31 2020 05:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34195 * 125.37377 * 2 1 4 4 C 1.47202 * 106.61146 * 179.97438 * 3 2 1 5 5 C 1.41732 * 127.00644 * 180.02562 * 4 3 2 6 6 C 1.38341 * 120.00256 * 38.56569 * 5 4 3 7 7 N 1.36299 * 127.22741 * 187.78030 * 6 5 4 8 8 C 1.30884 * 109.04471 * 179.86507 * 7 6 5 9 9 C 1.46643 * 124.30509 * 180.17243 * 8 7 6 10 10 C 1.36648 * 125.46019 * 180.31478 * 9 8 7 11 11 C 1.37686 * 113.24869 * 179.97438 * 10 9 8 12 12 C 1.33670 * 115.09515 * 359.97438 * 11 10 9 13 13 S 1.70606 * 110.98902 * 359.74665 * 12 11 10 14 14 O 1.34786 * 111.39351 * 0.41993 * 8 7 6 15 15 C 1.35043 * 108.67132 * 359.74726 * 14 8 7 16 16 O 1.21709 * 127.33119 * 179.97438 * 15 14 8 17 17 C 1.38470 * 105.97903 * 0.26618 * 4 3 2 18 18 C 1.50698 * 126.01748 * 179.73944 * 17 4 3 19 19 N 1.35721 * 107.96543 * 359.57113 * 17 4 3 20 20 C 1.37172 * 124.90414 * 180.17193 * 19 17 4 21 21 H 1.08005 * 120.00039 * 218.89088 * 20 19 17 22 22 C 1.38995 * 120.00262 * 38.88638 * 20 19 17 23 23 N 1.31298 * 119.99896 * 21.94088 * 22 20 19 24 24 Si 1.86796 * 120.00264 * 201.94629 * 22 20 19 25 25 H 1.48501 * 109.47420 * 59.99579 * 24 22 20 26 26 H 1.48504 * 109.47254 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46904 * 299.99906 * 24 22 20 28 28 H 1.09004 * 109.46690 * 90.03141 * 1 2 3 29 29 H 1.08998 * 109.46812 * 210.02860 * 1 2 3 30 30 H 1.08992 * 109.47552 * 330.03350 * 1 2 3 31 31 H 1.07997 * 126.69591 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99808 * 218.83318 * 5 4 3 33 33 H 1.07995 * 123.37510 * 359.97438 * 10 9 8 34 34 H 1.08001 * 122.45499 * 179.97438 * 11 10 9 35 35 H 1.08000 * 124.50668 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.47316 * 90.02092 * 18 17 4 37 37 H 1.08996 * 109.46958 * 210.02118 * 18 17 4 38 38 H 1.09000 * 109.46823 * 330.01846 * 18 17 4 39 39 H 0.96998 * 119.99710 * 182.43528 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2838 1.0942 0.0000 4 6 3.6776 0.6208 0.0006 5 6 4.8494 1.4180 0.0014 6 6 4.8940 2.5815 0.7484 7 7 5.8757 3.5271 0.7442 8 6 5.5550 4.4794 1.5828 9 6 6.3762 5.6673 1.8377 10 6 6.0676 6.6718 2.7112 11 6 7.0184 7.6668 2.7531 12 6 8.0667 7.4836 1.9443 13 16 7.9199 6.0231 1.0749 14 8 4.3765 4.2269 2.1862 15 6 3.8943 3.0550 1.7197 16 8 2.8546 2.5067 2.0354 17 6 3.6104 -0.7623 -0.0052 18 6 4.7848 -1.7066 -0.0125 19 7 2.3006 -1.1178 0.0005 20 6 1.8377 -2.4090 0.0007 21 1 0.9673 -2.6708 -0.5828 22 6 2.4888 -3.3807 0.7517 23 7 3.2431 -3.0293 1.7673 24 14 2.2909 -5.1863 0.3159 25 1 2.7764 -5.4176 -1.0683 26 1 3.0810 -6.0136 1.2629 27 1 0.8574 -5.5632 0.4071 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5133 31 1 1.9514 2.1217 -0.0004 32 1 5.7060 1.1195 -0.5847 33 1 5.1682 6.6840 3.3089 34 1 6.9240 8.5320 3.3926 35 1 8.8985 8.1669 1.8565 36 1 5.0706 -1.9390 1.0134 37 1 4.5091 -2.6254 -0.5299 38 1 5.6244 -1.2382 -0.5263 39 1 3.7256 -3.7046 2.2695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096310815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:08 Heat of formation + Delta-G solvation = 58.228225 kcal Electronic energy + Delta-G solvation = -26168.008164 eV Core-core repulsion = 22362.821900 eV Total energy + Delta-G solvation = -3805.186265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.082 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99505 -40.18850 -37.85158 -36.96301 -34.95614 -33.87955 -32.58207 -31.09996 -30.50996 -28.76632 -28.06394 -25.93340 -24.60785 -23.90294 -23.02559 -21.44724 -21.10624 -19.57526 -19.28084 -18.28860 -17.52297 -16.60622 -16.32107 -16.13044 -15.69221 -15.51193 -14.85373 -14.69898 -13.93245 -13.89726 -13.47278 -13.31150 -13.12217 -12.83701 -12.70852 -12.41779 -12.29073 -12.24179 -12.11836 -11.84335 -11.68812 -11.43415 -11.37061 -11.29325 -11.09548 -10.93042 -10.86935 -10.77627 -10.62307 -10.42263 -9.46335 -9.25809 -9.12975 -8.58790 -8.27324 -7.30008 -7.00267 -6.50934 -4.74577 0.25252 1.11978 1.36067 1.97523 2.44547 2.79497 2.90609 2.92729 3.14840 3.29197 3.32046 3.55806 3.67340 4.08406 4.32438 4.48006 4.60242 4.80214 4.94557 5.29831 5.47061 5.59940 5.78350 5.92035 6.02356 6.08802 6.13989 6.16741 6.22801 6.25183 6.30371 6.32641 6.46519 6.55481 6.58900 6.77273 6.77756 6.85216 7.05265 7.15141 7.25611 7.58391 7.92740 8.05686 8.15162 8.24748 8.67548 9.13532 9.96710 Molecular weight = 342.08amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.002564 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.893489 B =10919.688313 C =11513.265462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.037 4.037 3 C -0.117 4.117 4 C -0.264 4.264 5 C 0.190 3.810 6 C -0.197 4.197 7 N -0.435 5.435 8 C 0.268 3.732 9 C -0.133 4.133 10 C -0.108 4.108 11 C -0.137 4.137 12 C -0.267 4.267 13 S 0.255 5.745 14 O -0.296 6.296 15 C 0.469 3.531 16 O -0.434 6.434 17 C 0.107 3.893 18 C -0.069 4.069 19 N -0.225 5.225 20 C -0.360 4.360 21 H 0.111 0.889 22 C 0.057 3.943 23 N -0.808 5.808 24 Si 0.927 3.073 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.265 1.265 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 10.450 -2.048 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.143 4.143 3 C -0.139 4.139 4 C -0.271 4.271 5 C 0.168 3.832 6 C -0.307 4.307 7 N -0.164 5.164 8 C 0.056 3.944 9 C -0.252 4.252 10 C -0.142 4.142 11 C -0.168 4.168 12 C -0.405 4.405 13 S 0.521 5.479 14 O -0.200 6.200 15 C 0.315 3.685 16 O -0.319 6.319 17 C -0.024 4.024 18 C -0.126 4.126 19 N 0.118 4.882 20 C -0.488 4.488 21 H 0.128 0.872 22 C -0.158 4.158 23 N -0.436 5.436 24 Si 0.751 3.249 25 H -0.188 1.188 26 H -0.200 1.200 27 H -0.189 1.189 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.184 0.816 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.240 8.947 -3.154 12.565 hybrid contribution -1.631 0.112 1.729 2.379 sum 6.609 9.059 -1.425 11.303 Atomic orbital electron populations 1.20069 0.89465 1.02252 1.00807 1.20269 0.93405 0.86287 1.14308 1.21471 0.90614 0.96392 1.05382 1.18092 0.92498 0.91726 1.24748 1.20578 0.93788 0.85971 0.82816 1.21057 0.96930 1.02644 1.10093 1.70953 1.26440 1.01493 1.17540 1.21133 0.84504 0.94659 0.94069 1.21851 1.00151 0.96568 1.06593 1.20780 1.01298 0.92897 0.99240 1.19879 0.94166 1.00920 1.01881 1.25303 1.05001 1.04618 1.05564 1.83234 1.12696 1.12786 1.39144 1.84904 1.33896 1.41093 1.60114 1.21703 0.86695 0.78083 0.81998 1.91013 1.22637 1.55884 1.62410 1.20741 0.85997 0.91908 1.03748 1.20346 0.92493 0.96984 1.02736 1.39953 1.03553 1.04989 1.39731 1.19830 1.16825 0.82056 1.30058 0.87159 1.25608 0.95581 1.01816 0.92763 1.70029 1.24359 1.37037 1.12204 0.85981 0.79580 0.80040 0.79339 1.18772 1.20008 1.18942 0.92814 0.91682 0.91763 0.85712 0.85311 0.83330 0.84190 0.81644 0.89747 0.91955 0.92862 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.03 36.00 0.36 -0.94 16 2 C -0.04 -0.84 6.80 -81.67 -0.56 -1.40 16 3 C -0.12 -2.68 8.27 -37.37 -0.31 -2.99 16 4 C -0.26 -5.92 5.52 -104.84 -0.58 -6.50 16 5 C 0.19 3.79 9.70 -38.21 -0.37 3.42 16 6 C -0.20 -4.13 6.99 -82.20 -0.57 -4.70 16 7 N -0.44 -8.44 11.31 -8.04 -0.09 -8.54 16 8 C 0.27 4.97 7.91 -14.57 -0.12 4.85 16 9 C -0.13 -1.96 6.46 -36.77 -0.24 -2.19 16 10 C -0.11 -1.36 10.22 -40.36 -0.41 -1.77 16 11 C -0.14 -1.37 10.15 -41.38 -0.42 -1.79 16 12 C -0.27 -2.48 10.91 29.13 0.32 -2.16 16 13 S 0.25 2.90 23.03 -107.50 -2.48 0.43 16 14 O -0.30 -6.11 10.69 -21.77 -0.23 -6.34 16 15 C 0.47 10.64 8.43 34.37 0.29 10.93 16 16 O -0.43 -10.88 14.31 -18.89 -0.27 -11.15 16 17 C 0.11 2.46 6.38 -80.79 -0.52 1.94 16 18 C -0.07 -1.38 8.33 36.00 0.30 -1.08 16 19 N -0.23 -5.42 2.75 -53.15 -0.15 -5.57 16 20 C -0.36 -8.47 8.90 -14.88 -0.13 -8.61 16 21 H 0.11 2.46 7.92 -52.48 -0.42 2.05 16 22 C 0.06 1.28 3.82 -17.50 -0.07 1.22 16 23 N -0.81 -19.36 10.63 55.50 0.59 -18.77 16 24 Si 0.93 17.12 29.61 -169.99 -5.03 12.09 16 25 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 26 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 27 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.25 7.75 -51.93 -0.40 0.85 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.13 2.80 7.15 -52.49 -0.38 2.42 16 32 H 0.13 2.15 7.92 -52.49 -0.42 1.73 16 33 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.08 1.80 6.89 -51.93 -0.36 1.44 16 37 H 0.06 1.25 6.96 -51.93 -0.36 0.89 16 38 H 0.05 0.89 7.83 -51.93 -0.41 0.48 16 39 H 0.29 6.31 8.31 -40.82 -0.34 5.97 16 LS Contribution 353.64 15.07 5.33 5.33 Total: -1.00 -28.83 353.64 -9.33 -38.16 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -3.98 Total: 6.13 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -3.02 Total: -11.77 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.35 Total: -32.87 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.50 Total: -17.50 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.48 Total: 0.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.83 -9.33 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096310815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.386 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds