Wall clock time and date at job start Tue Mar 31 2020 05:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34720 * 117.00118 * 2 1 4 4 O 1.21464 * 119.99946 * 0.02562 * 3 2 1 5 5 C 1.47758 * 119.99910 * 179.97438 * 3 2 1 6 6 C 1.39731 * 119.97630 * 180.02562 * 5 3 2 7 7 C 1.37638 * 120.01569 * 180.02562 * 6 5 3 8 8 C 1.39890 * 119.98084 * 0.02562 * 7 6 5 9 9 C 1.47266 * 120.01767 * 179.97438 * 8 7 6 10 10 C 1.34723 * 120.00066 * 136.33788 * 9 8 7 11 11 C 1.46631 * 119.99915 * 349.02802 * 10 9 8 12 12 O 1.21673 * 119.99716 * 353.22835 * 11 10 9 13 13 N 1.34776 * 120.00213 * 173.23317 * 11 10 9 14 14 C 1.46503 * 120.00063 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46839 * 269.99723 * 14 13 11 16 16 H 1.08002 * 120.00325 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00299 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00797 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99573 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46976 * 90.00323 * 19 17 15 21 21 H 1.48496 * 109.47284 * 210.00257 * 19 17 15 22 22 H 1.48501 * 109.47157 * 330.00702 * 19 17 15 23 23 C 1.46503 * 119.99802 * 359.97438 * 13 11 10 24 24 C 1.52995 * 109.46910 * 270.00008 * 23 13 11 25 25 C 1.47207 * 109.47045 * 179.97438 * 24 23 13 26 26 N 9.95331 * 136.57450 * 353.63228 * 5 1 2 27 27 C 1.39884 * 119.96406 * 0.27449 * 8 7 6 28 28 C 1.37645 * 119.97664 * 359.44402 * 27 8 7 29 29 H 1.09002 * 109.46779 * 300.00210 * 1 2 3 30 30 H 1.09000 * 109.46924 * 59.99683 * 1 2 3 31 31 H 1.08992 * 109.46830 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.99415 * 0.02562 * 6 5 3 33 33 H 1.08004 * 120.00908 * 180.02562 * 7 6 5 34 34 H 1.08002 * 119.99860 * 316.33461 * 9 8 7 35 35 H 1.07997 * 120.00258 * 169.03200 * 10 9 8 36 36 H 1.08994 * 109.46933 * 29.99512 * 14 13 11 37 37 H 1.08998 * 109.47030 * 149.99837 * 14 13 11 38 38 H 0.96991 * 120.00479 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.46932 * 30.00397 * 23 13 11 40 40 H 1.09005 * 109.46941 * 150.00155 * 23 13 11 41 41 H 1.08993 * 109.47631 * 299.99915 * 24 23 13 42 42 H 1.08996 * 109.47263 * 60.00505 * 24 23 13 43 43 H 1.08004 * 120.01439 * 179.70697 * 27 8 7 44 44 H 1.08001 * 119.99273 * 180.25808 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5392 1.2776 0.0006 6 6 4.1731 2.5229 0.0011 7 6 5.5475 2.5958 0.0011 8 6 6.3098 1.4228 0.0000 9 6 7.7805 1.4999 -0.0005 10 6 8.4977 0.6918 0.8041 11 6 7.8250 -0.0886 1.8475 12 8 6.6411 0.0846 2.0686 13 7 8.5180 -0.9976 2.5616 14 6 7.8457 -1.7777 3.6036 15 6 7.9394 -1.0462 4.9178 16 1 8.4485 -0.0952 4.9715 17 6 7.3754 -1.5910 6.0519 18 7 7.4567 -0.9525 7.1987 19 14 6.4943 -3.2356 5.9590 20 1 7.4631 -4.3314 6.2154 21 1 5.4170 -3.2783 6.9801 22 1 5.9024 -3.4044 4.6075 23 6 9.9433 -1.2064 2.2949 24 6 10.1092 -2.2935 1.2312 25 6 11.5414 -2.5029 0.9629 26 7 12.6474 -2.6640 0.7576 27 6 5.6744 0.1767 -0.0069 28 6 4.2998 0.1056 -0.0010 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.5845 3.4283 0.0015 33 1 6.0374 3.5584 0.0020 34 1 8.2840 2.2043 -0.6461 35 1 9.5681 0.6187 0.6808 36 1 6.7975 -1.9128 3.3369 37 1 8.3259 -2.7519 3.6949 38 1 7.0602 -1.3360 7.9965 39 1 10.3859 -0.2769 1.9367 40 1 10.4429 -1.5168 3.2127 41 1 9.6666 -3.2230 1.5894 42 1 9.6096 -1.9832 0.3136 43 1 6.2621 -0.7294 -0.0125 44 1 3.8089 -0.8565 -0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096313752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:06 Heat of formation + Delta-G solvation = -50.669817 kcal Electronic energy + Delta-G solvation = -28820.383862 eV Core-core repulsion = 24703.555648 eV Total energy + Delta-G solvation = -4116.828215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.62772 -40.99735 -39.53691 -37.93943 -37.51963 -36.68761 -34.99600 -34.61131 -32.31069 -31.96789 -31.36304 -29.73280 -28.55012 -25.98046 -25.18497 -24.46802 -23.56365 -22.49610 -21.46368 -19.39308 -19.16252 -18.97912 -18.58756 -18.23144 -18.01109 -17.40530 -17.14839 -16.32983 -16.04605 -15.87481 -15.66275 -15.46089 -15.28249 -14.84819 -14.66975 -14.57766 -14.46231 -14.31625 -14.15971 -13.87157 -13.62146 -13.52534 -13.38870 -13.26327 -13.02645 -12.97727 -12.68753 -12.51762 -12.31538 -12.05741 -11.98896 -11.85468 -11.81223 -11.69270 -11.64178 -10.88387 -10.74658 -10.52601 -9.86701 -9.29692 -9.11685 -8.26453 -6.30394 -0.56607 0.52696 0.61840 1.37640 1.42764 1.51641 1.57900 1.70451 1.77715 1.89953 2.32558 2.37422 2.58703 2.91506 3.09494 3.23215 3.66863 3.83930 3.87803 3.96749 4.04991 4.15392 4.17864 4.27163 4.30154 4.43546 4.49903 4.56628 4.65921 4.70400 4.85896 4.87678 4.90788 5.04538 5.06479 5.09992 5.17175 5.24678 5.32320 5.37825 5.49521 5.56064 5.64619 5.73625 5.96162 6.32035 6.62995 6.66594 6.73326 6.79581 7.30931 7.55271 8.90667 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.008221 B = 0.003602 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.161852 B = 7771.200004 C = 9907.750981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.510 3.490 4 O -0.539 6.539 5 C -0.147 4.147 6 C -0.076 4.076 7 C -0.118 4.118 8 C -0.033 4.033 9 C -0.031 4.031 10 C -0.197 4.197 11 C 0.521 3.479 12 O -0.565 6.565 13 N -0.589 5.589 14 C 0.224 3.776 15 C -0.529 4.529 16 H 0.028 0.972 17 C 0.008 3.992 18 N -0.951 5.951 19 Si 0.942 3.058 20 H -0.254 1.254 21 H -0.293 1.293 22 H -0.244 1.244 23 C 0.110 3.890 24 C -0.036 4.036 25 C 0.245 3.755 26 N -0.494 5.494 27 C -0.059 4.059 28 C -0.082 4.082 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.264 0.736 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.142 0.858 43 H 0.128 0.872 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 0.120 -21.044 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.358 3.642 4 O -0.431 6.431 5 C -0.148 4.148 6 C -0.094 4.094 7 C -0.136 4.136 8 C -0.033 4.033 9 C -0.050 4.050 10 C -0.218 4.218 11 C 0.312 3.688 12 O -0.446 6.446 13 N -0.318 5.318 14 C 0.102 3.898 15 C -0.568 4.568 16 H 0.046 0.954 17 C -0.189 4.189 18 N -0.592 5.592 19 Si 0.765 3.235 20 H -0.178 1.178 21 H -0.220 1.220 22 H -0.167 1.167 23 C -0.014 4.014 24 C -0.077 4.077 25 C -0.072 4.072 26 N -0.172 5.172 27 C -0.078 4.078 28 C -0.100 4.100 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.177 0.823 34 H 0.202 0.798 35 H 0.191 0.809 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.144 0.856 42 H 0.160 0.840 43 H 0.146 0.854 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.411 0.189 -21.033 21.171 hybrid contribution -1.223 -0.320 1.337 1.840 sum -3.634 -0.131 -19.696 20.029 Atomic orbital electron populations 1.23594 0.74309 1.05899 1.02644 1.86557 1.25330 1.31916 1.83817 1.21536 0.89676 0.81391 0.71629 1.90771 1.67499 1.36849 1.47993 1.19222 0.88415 0.95955 1.11257 1.21190 0.95339 0.96201 0.96664 1.21423 0.92573 0.99035 1.00560 1.19558 0.94754 0.93282 0.95686 1.22768 0.90569 0.95206 0.96425 1.23390 1.02331 0.99483 0.96556 1.19216 0.86583 0.79904 0.83065 1.90868 1.17248 1.66865 1.69656 1.47815 1.10289 1.38617 1.35124 1.19353 0.93991 0.91564 0.84913 1.21640 1.35385 1.06228 0.93550 0.95391 1.25841 0.96535 1.01809 0.94718 1.70064 1.47215 1.41263 1.00673 0.85799 0.78890 0.79620 0.79202 1.17800 1.21976 1.16704 1.21566 0.81099 0.99739 0.99033 1.19875 0.82154 1.02979 1.02680 1.29253 0.94880 0.91588 0.91458 1.81288 1.14197 1.10653 1.11060 1.21196 0.93772 0.97512 0.95275 1.21314 0.94270 0.97663 0.96777 0.92273 0.91305 0.84812 0.84615 0.82348 0.79815 0.80910 0.95290 0.92741 0.92672 0.87533 0.90287 0.85608 0.84047 0.85369 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.57 113.37 1.20 1.71 16 2 O -0.36 -9.37 9.80 -56.30 -0.55 -9.92 16 3 C 0.51 15.37 7.90 70.34 0.56 15.93 16 4 O -0.54 -18.11 16.12 19.95 0.32 -17.79 16 5 C -0.15 -4.31 5.88 -20.04 -0.12 -4.43 16 6 C -0.08 -2.01 9.57 22.49 0.22 -1.80 16 7 C -0.12 -2.70 9.77 22.53 0.22 -2.48 16 8 C -0.03 -0.76 4.53 -20.11 -0.09 -0.86 16 9 C -0.03 -0.50 9.80 23.84 0.23 -0.27 16 10 C -0.20 -3.72 9.14 23.66 0.22 -3.50 16 11 C 0.52 16.11 6.66 86.43 0.58 16.68 16 12 O -0.57 -22.69 11.74 -4.26 -0.05 -22.74 16 13 N -0.59 -18.32 2.46 -830.95 -2.04 -20.36 16 14 C 0.22 9.20 4.23 85.63 0.36 9.56 16 15 C -0.53 -28.65 9.94 25.60 0.25 -28.39 16 16 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 17 C 0.01 0.46 5.47 84.66 0.46 0.93 16 18 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 19 Si 0.94 41.81 27.47 68.60 1.88 43.70 16 20 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 23 C 0.11 2.29 5.12 86.38 0.44 2.73 16 24 C -0.04 -0.48 6.03 28.79 0.17 -0.30 16 25 C 0.25 4.50 15.43 89.44 1.38 5.88 16 26 N -0.49 -12.45 18.54 20.01 0.37 -12.08 16 27 C -0.06 -1.56 6.58 22.53 0.15 -1.41 16 28 C -0.08 -2.28 9.60 22.49 0.22 -2.07 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.14 3.40 7.63 -2.91 -0.02 3.38 16 33 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.17 1.85 6.15 -2.91 -0.02 1.84 16 36 H 0.03 1.30 6.48 -2.39 -0.02 1.29 16 37 H 0.05 1.96 7.50 -2.39 -0.02 1.94 16 38 H 0.26 15.36 8.31 -92.72 -0.77 14.59 16 39 H 0.11 1.67 6.02 -2.39 -0.01 1.66 16 40 H 0.08 1.94 8.07 -2.38 -0.02 1.92 16 41 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.13 3.14 7.03 -2.91 -0.02 3.12 16 44 H 0.14 3.51 7.59 -2.91 -0.02 3.49 16 Total: -1.00 -83.99 386.71 7.66 -76.33 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.98 Total: 13.44 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 6.44 Total: 7.91 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -1.37 Total: -90.92 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.28 Total: -50.45 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.88 Total: 43.70 kcal Total: -83.99 7.66 -76.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096313752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.661 kcal (2) G-P(sol) polarization free energy of solvation -83.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds