Wall clock time and date at job start Tue Mar 31 2020 06:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99755 * 2 1 4 4 H 1.48502 * 109.47238 * 240.00071 * 3 2 1 5 5 H 1.48497 * 109.47432 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47171 * 120.00167 * 3 2 1 7 7 C 1.37876 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00244 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99645 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00163 * 270.00080 * 10 9 7 12 12 O 1.21597 * 119.99922 * 184.01249 * 11 10 9 13 13 N 1.34773 * 120.00271 * 4.01305 * 11 10 9 14 14 C 1.40059 * 120.00069 * 185.23409 * 13 11 10 15 15 C 1.38878 * 120.01416 * 326.17776 * 14 13 11 16 16 C 1.38174 * 120.07743 * 179.72237 * 15 14 13 17 17 C 1.38344 * 120.10827 * 0.55760 * 16 15 14 18 18 F 1.35101 * 119.98652 * 179.74449 * 17 16 15 19 19 C 1.39027 * 120.02936 * 359.71803 * 17 16 15 20 20 N 1.40294 * 120.03784 * 180.02562 * 19 17 16 21 21 C 1.36544 * 125.66324 * 129.67199 * 20 19 17 22 22 C 1.34865 * 108.19806 * 179.86514 * 21 20 19 23 23 C 1.40935 * 107.46361 * 0.38811 * 22 21 20 24 24 C 1.34865 * 107.46262 * 359.75652 * 23 22 21 25 25 C 1.38687 * 119.92192 * 0.02562 * 19 17 16 26 26 C 1.46512 * 119.99979 * 89.99787 * 10 9 7 27 27 C 1.52992 * 117.49951 * 160.57413 * 26 10 9 28 28 C 1.52995 * 117.49863 * 229.24115 * 26 10 9 29 29 H 0.97001 * 119.99858 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47351 * 59.99572 * 9 7 2 31 31 H 1.08999 * 109.47206 * 299.99364 * 9 7 2 32 32 H 0.97003 * 119.99898 * 5.22279 * 13 11 10 33 33 H 1.08004 * 119.96379 * 359.97438 * 15 14 13 34 34 H 1.08003 * 119.94524 * 180.27023 * 16 15 14 35 35 H 1.07996 * 125.90340 * 359.97438 * 21 20 19 36 36 H 1.07999 * 126.26782 * 180.13216 * 22 21 20 37 37 H 1.08005 * 126.26489 * 179.77929 * 23 22 21 38 38 H 1.07990 * 125.89764 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.05867 * 179.97438 * 25 19 17 40 40 H 1.09003 * 115.54748 * 14.90630 * 26 10 9 41 41 H 1.08999 * 117.50305 * 214.99905 * 27 26 10 42 42 H 1.09002 * 117.49923 * 0.02682 * 27 26 10 43 43 H 1.09001 * 117.49826 * 359.96821 * 28 26 10 44 44 H 1.09001 * 117.49912 * 144.97441 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6410 -4.1248 -1.1666 12 8 3.3737 -5.0952 -1.1678 13 7 2.2668 -3.5615 -2.3324 14 6 2.6310 -4.1570 -3.5466 15 6 3.8462 -4.8199 -3.6583 16 6 4.2042 -5.4128 -4.8539 17 6 3.3587 -5.3379 -5.9463 18 9 3.7135 -5.9141 -7.1156 19 6 2.1436 -4.6705 -5.8411 20 7 1.2858 -4.5949 -6.9487 21 6 -0.0434 -4.9074 -6.9488 22 6 -0.5234 -4.7056 -8.1929 23 6 0.5484 -4.2608 -8.9928 24 6 1.6428 -4.2021 -8.2067 25 6 1.7807 -4.0795 -4.6402 26 6 2.6791 -4.1694 1.2694 27 6 3.2858 -5.5736 1.2413 28 6 4.1886 -4.3531 1.4381 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 1.7452 -2.7436 -2.3305 33 1 4.5104 -4.8757 -2.8085 34 1 5.1479 -5.9316 -4.9371 35 1 -0.6125 -5.2544 -6.0991 36 1 -1.5416 -4.8607 -8.5179 37 1 0.5018 -4.0122 -10.0428 38 1 2.6307 -3.8974 -8.5186 39 1 0.8375 -3.5601 -4.5561 40 1 2.1048 -3.8868 2.1517 41 1 3.1108 -6.2149 2.1051 42 1 3.3312 -6.0830 0.2787 43 1 4.8275 -4.0602 0.6049 44 1 4.6074 -4.1911 2.4313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096418705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:05 Heat of formation + Delta-G solvation = 60.842748 kcal Electronic energy + Delta-G solvation = -29461.127650 eV Core-core repulsion = 25296.081861 eV Total energy + Delta-G solvation = -4165.045788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.95819 -41.46735 -40.53040 -38.73424 -36.33850 -34.88854 -33.75161 -32.94771 -32.24254 -29.73534 -28.84033 -28.33755 -27.21651 -23.67475 -23.46610 -22.94329 -21.94814 -21.88559 -20.45241 -20.30919 -19.49670 -18.44350 -17.52080 -17.23544 -16.83126 -16.49947 -16.15739 -15.67147 -15.19537 -14.80331 -14.67565 -14.54522 -14.29828 -14.25359 -13.97650 -13.57793 -13.34365 -13.09204 -12.90609 -12.69219 -12.47551 -12.32725 -12.27221 -12.10784 -11.73936 -11.49150 -11.32008 -11.04118 -10.86467 -10.76768 -10.37192 -10.18054 -9.79639 -9.76213 -9.60511 -9.06196 -8.72025 -8.52439 -8.23805 -8.02608 -7.61561 -6.34168 -4.44121 0.85345 1.02091 2.26741 2.68776 2.99886 3.05700 3.15011 3.21083 3.23378 3.26138 3.68388 4.07164 4.14864 4.30789 4.51048 4.63101 4.89216 4.98565 5.04650 5.08409 5.17895 5.28517 5.38767 5.44746 5.47422 5.55588 5.58783 5.67374 5.83715 6.07109 6.13265 6.15431 6.20320 6.22082 6.23038 6.34228 6.51406 6.56082 6.77148 6.90038 6.92903 7.05388 7.13221 7.18330 7.40391 7.55613 7.60138 7.84059 8.29771 8.65389 8.96721 9.26037 10.71566 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009986 B = 0.003427 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2803.345567 B = 8169.136298 C = 9894.300190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.238 3.762 10 N -0.577 5.577 11 C 0.711 3.289 12 O -0.594 6.594 13 N -0.679 5.679 14 C 0.196 3.804 15 C -0.094 4.094 16 C -0.118 4.118 17 C 0.067 3.933 18 F -0.135 7.135 19 C 0.107 3.893 20 N -0.399 5.399 21 C -0.008 4.008 22 C -0.196 4.196 23 C -0.198 4.198 24 C -0.004 4.004 25 C -0.130 4.130 26 C 0.104 3.896 27 C -0.204 4.204 28 C -0.190 4.190 29 H 0.268 0.732 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.424 0.576 33 H 0.162 0.838 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.141 0.859 43 H 0.091 0.909 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 -8.677 -9.089 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.307 5.307 11 C 0.414 3.586 12 O -0.476 6.476 13 N -0.328 5.328 14 C 0.097 3.903 15 C -0.115 4.115 16 C -0.137 4.137 17 C 0.046 3.954 18 F -0.114 7.114 19 C 0.015 3.985 20 N -0.072 5.072 21 C -0.135 4.135 22 C -0.221 4.221 23 C -0.222 4.222 24 C -0.131 4.131 25 C -0.152 4.152 26 C -0.002 4.002 27 C -0.241 4.241 28 C -0.229 4.229 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.265 0.735 33 H 0.179 0.821 34 H 0.162 0.838 35 H 0.181 0.819 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.161 0.839 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.158 0.842 43 H 0.110 0.890 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.435 -9.194 -8.742 13.143 hybrid contribution 0.101 1.520 -0.078 1.526 sum 3.535 -7.674 -8.820 12.214 Atomic orbital electron populations 1.69901 1.06024 1.27769 1.48939 1.24951 0.94864 0.99417 0.94390 0.86536 0.79572 0.82349 0.78956 1.20050 1.21044 1.19993 1.21470 0.93743 0.90248 1.53047 0.91855 1.19440 0.87276 0.82623 0.98792 1.46852 1.46210 1.35580 1.02100 1.15827 0.80236 0.82087 0.80451 1.90625 1.42093 1.29152 1.85745 1.43000 1.58103 1.29169 1.02504 1.17349 0.92295 0.95449 0.85170 1.21479 0.95301 0.96923 0.97790 1.20973 1.00068 1.01545 0.91162 1.17475 0.95019 0.99726 0.83193 1.91491 1.91822 1.82485 1.45599 1.17306 0.91033 1.02201 0.87980 1.41367 1.07897 1.50985 1.06948 1.21988 0.83064 1.08278 1.00172 1.20928 0.99481 1.08513 0.93143 1.20916 0.92725 1.09007 0.99575 1.21936 1.00458 1.07471 0.83246 1.20654 1.00754 1.02546 0.91266 1.21367 0.94421 0.97548 0.86816 1.24027 1.03431 0.91501 1.05179 1.23161 0.94273 1.03413 1.02022 0.92219 0.94920 0.93894 0.73549 0.82096 0.83774 0.81916 0.84361 0.84425 0.82215 0.83931 0.85568 0.90258 0.84160 0.89029 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.05 13.29 55.43 0.74 -22.31 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 19.66 29.54 -169.99 -5.02 14.63 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -13.20 9.29 -34.44 -0.32 -13.52 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.24 5.20 4.86 -5.19 -0.03 5.17 16 10 N -0.58 -11.23 2.83 -173.17 -0.49 -11.72 16 11 C 0.71 13.40 7.86 -86.93 -0.68 12.72 16 12 O -0.59 -11.31 9.48 5.28 0.05 -11.26 16 13 N -0.68 -11.64 5.15 -14.22 -0.07 -11.71 16 14 C 0.20 2.99 6.32 -83.67 -0.53 2.46 16 15 C -0.09 -1.36 8.71 -39.37 -0.34 -1.70 16 16 C -0.12 -1.48 10.01 -39.57 -0.40 -1.88 16 17 C 0.07 0.91 7.20 -39.25 -0.28 0.63 16 18 F -0.14 -1.86 16.25 2.25 0.04 -1.82 16 19 C 0.11 1.49 5.98 -83.52 -0.50 0.99 16 20 N -0.40 -5.46 2.82 -60.89 -0.17 -5.63 16 21 C -0.01 -0.10 11.13 -16.65 -0.19 -0.29 16 22 C -0.20 -2.36 10.86 -39.76 -0.43 -2.79 16 23 C -0.20 -2.38 10.86 -39.76 -0.43 -2.82 16 24 C 0.00 -0.05 10.37 -16.65 -0.17 -0.22 16 25 C -0.13 -1.81 9.58 -39.23 -0.38 -2.19 16 26 C 0.10 1.82 6.62 -67.93 -0.45 1.37 16 27 C -0.20 -3.23 9.65 -26.69 -0.26 -3.49 16 28 C -0.19 -3.08 9.87 -26.69 -0.26 -3.35 16 29 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.03 0.72 6.62 -51.93 -0.34 0.38 16 31 H 0.04 0.99 8.03 -51.93 -0.42 0.58 16 32 H 0.42 7.49 6.67 -40.82 -0.27 7.22 16 33 H 0.16 2.49 6.10 -52.48 -0.32 2.17 16 34 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.14 1.35 8.06 -52.48 -0.42 0.92 16 38 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.14 1.88 8.06 -52.48 -0.42 1.45 16 40 H 0.13 2.07 8.09 -51.93 -0.42 1.65 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.14 2.51 5.09 -52.65 -0.27 2.24 16 43 H 0.09 1.64 7.66 -51.93 -0.40 1.24 16 44 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -26.59 374.32 -10.40 -36.99 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.37 Total: 14.50 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -5.74 Total: -7.32 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.00 Total: -51.37 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.05 Total: -11.26 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.59 -10.40 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096418705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.833 kcal (2) G-P(sol) polarization free energy of solvation -26.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds