Wall clock time and date at job start Tue Mar 31 2020 07:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47534 * 269.99949 * 3 2 1 5 5 H 1.48497 * 109.47233 * 29.99928 * 3 2 1 6 6 H 1.48506 * 109.47290 * 150.00089 * 3 2 1 7 7 C 1.37877 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00190 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47476 * 174.93897 * 9 7 2 11 11 C 1.46898 * 111.00234 * 163.54956 * 10 9 7 12 12 C 1.50699 * 109.47424 * 199.54782 * 11 10 9 13 13 N 1.30035 * 126.18903 * 79.75171 * 12 11 10 14 14 O 1.21290 * 110.48273 * 180.02562 * 13 12 11 15 15 C 1.34194 * 109.69457 * 359.97438 * 14 13 12 16 16 C 1.47815 * 126.67366 * 180.02562 * 15 14 13 17 17 C 1.39581 * 120.14250 * 179.70571 * 16 15 14 18 18 C 1.37959 * 119.84440 * 179.69884 * 17 16 15 19 19 C 1.38355 * 120.14865 * 0.59583 * 18 17 16 20 20 C 1.38356 * 120.29372 * 359.67669 * 19 18 17 21 21 C 1.37950 * 120.14708 * 0.02562 * 20 19 18 22 22 N 1.32125 * 106.65045 * 359.73830 * 15 14 13 23 23 C 1.46901 * 111.00099 * 287.50458 * 10 9 7 24 24 C 1.53181 * 109.54075 * 273.78870 * 23 10 9 25 25 C 1.53098 * 109.16092 * 183.15406 * 24 23 10 26 26 O 1.42908 * 109.41552 * 57.60371 * 25 24 23 27 27 C 1.42903 * 114.09812 * 298.84294 * 26 25 24 28 28 C 1.53095 * 109.41343 * 61.15624 * 27 26 25 29 29 H 0.96996 * 120.00139 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.47210 * 54.94016 * 9 7 2 31 31 H 1.09002 * 109.47098 * 294.94260 * 9 7 2 32 32 H 1.09008 * 109.47006 * 319.54524 * 11 10 9 33 33 H 1.09003 * 109.47137 * 79.53942 * 11 10 9 34 34 H 1.07992 * 120.07335 * 359.97438 * 17 16 15 35 35 H 1.08003 * 119.92046 * 180.29466 * 18 17 16 36 36 H 1.08002 * 119.85307 * 179.69465 * 19 18 17 37 37 H 1.08005 * 119.92476 * 180.02562 * 20 19 18 38 38 H 1.08001 * 120.07761 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.61560 * 34.00822 * 23 10 9 40 40 H 1.08996 * 109.52801 * 63.24919 * 24 23 10 41 41 H 1.08995 * 109.51901 * 303.05375 * 24 23 10 42 42 H 1.08996 * 109.48115 * 177.59018 * 25 24 23 43 43 H 1.09005 * 109.47599 * 297.61317 * 25 24 23 44 44 H 1.08994 * 109.48164 * 181.14288 * 27 26 25 45 45 H 1.09000 * 109.47992 * 301.17449 * 27 26 25 46 46 H 1.09003 * 109.51904 * 62.29926 * 28 27 26 47 47 H 1.09001 * 109.52115 * 182.41752 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2011 -3.6130 -0.1210 11 6 1.5729 -4.8848 0.2608 12 6 2.6421 -5.8947 0.5893 13 7 3.3025 -5.9778 1.7064 14 8 4.0951 -6.8949 1.6636 15 6 4.0138 -7.5078 0.4726 16 6 4.8086 -8.6696 0.0214 17 6 4.6066 -9.2051 -1.2516 18 6 5.3561 -10.2857 -1.6687 19 6 6.2976 -10.8460 -0.8237 20 6 6.4987 -10.3235 0.4415 21 6 5.7602 -9.2394 0.8688 22 7 3.0807 -6.8746 -0.2161 23 6 2.7553 -3.6865 -1.4795 24 6 1.8207 -4.5110 -2.3701 25 6 2.4443 -4.6485 -3.7616 26 8 3.7330 -5.2555 -3.6468 27 6 4.6638 -4.5051 -2.8641 28 6 4.1293 -4.3619 -1.4366 29 1 -0.4850 0.8400 -0.0004 30 1 0.5585 -2.5189 -0.8410 31 1 0.6938 -2.5969 0.9322 32 1 0.9393 -4.7293 1.1341 33 1 0.9667 -5.2535 -0.5668 34 1 3.8685 -8.7719 -1.9101 35 1 5.2042 -10.6980 -2.6553 36 1 6.8782 -11.6949 -1.1533 37 1 7.2354 -10.7653 1.0961 38 1 5.9184 -8.8322 1.8565 39 1 2.8558 -2.6812 -1.8886 40 1 0.8570 -4.0083 -2.4510 41 1 1.6812 -5.5003 -1.9343 42 1 1.8040 -5.2703 -4.3871 43 1 2.5461 -3.6617 -4.2133 44 1 5.6222 -5.0236 -2.8431 45 1 4.7948 -3.5165 -3.3041 46 1 4.0364 -5.3482 -0.9819 47 1 4.8172 -3.7535 -0.8494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:11 Heat of formation + Delta-G solvation = 72.390738 kcal Electronic energy + Delta-G solvation = -30826.551939 eV Core-core repulsion = 26785.467214 eV Total energy + Delta-G solvation = -4041.084725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.34922 -39.45737 -39.36693 -36.93877 -35.41076 -33.37790 -32.76317 -31.38145 -31.25359 -30.68780 -30.24722 -28.17559 -25.77075 -24.60430 -24.00441 -23.30629 -23.13221 -22.29947 -21.33137 -20.73170 -19.26484 -18.03896 -17.76645 -16.72887 -16.46756 -16.06392 -15.88578 -15.65444 -15.18750 -15.07791 -14.48863 -14.39561 -14.08803 -13.93623 -13.79431 -13.72580 -13.44103 -13.29129 -12.70638 -12.36739 -12.22380 -11.97969 -11.91439 -11.80811 -11.63267 -11.35811 -11.28656 -10.91658 -10.85536 -10.78249 -10.71641 -10.49430 -10.40987 -10.13338 -10.05220 -9.51927 -9.38608 -9.29440 -9.15595 -8.80458 -8.48964 -7.39911 -6.08204 -4.09697 0.36373 1.07349 1.73388 2.48765 2.79548 3.28387 3.35141 3.39945 3.51584 3.71006 4.16529 4.27974 4.39133 4.61991 4.64219 4.72353 4.81898 5.02064 5.11864 5.20064 5.22450 5.26930 5.28315 5.38451 5.50393 5.54266 5.63183 5.68296 5.71176 5.79039 5.85021 5.91457 5.97799 5.98296 6.05867 6.12012 6.17195 6.22433 6.26319 6.31552 6.38423 6.55816 6.60052 6.78392 7.11975 7.23492 7.48923 7.73819 7.95667 8.06421 8.39854 8.42299 8.98115 9.54748 11.02101 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003131 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.366747 B = 8940.712365 C = 9705.075564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.523 5.523 11 C 0.125 3.875 12 C 0.200 3.800 13 N -0.365 5.365 14 O 0.079 5.921 15 C 0.201 3.799 16 C -0.020 4.020 17 C -0.062 4.062 18 C -0.123 4.123 19 C -0.098 4.098 20 C -0.124 4.124 21 C -0.083 4.083 22 N -0.456 5.456 23 C 0.094 3.906 24 C -0.192 4.192 25 C 0.071 3.929 26 O -0.383 6.383 27 C 0.068 3.932 28 C -0.158 4.158 29 H 0.262 0.738 30 H 0.002 0.998 31 H 0.029 0.971 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.269 -21.224 -3.968 23.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.247 5.247 11 C -0.005 4.005 12 C -0.073 4.073 13 N -0.071 5.071 14 O 0.018 5.982 15 C -0.017 4.017 16 C -0.023 4.023 17 C -0.082 4.082 18 C -0.141 4.141 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.103 4.103 22 N -0.190 5.190 23 C -0.015 4.015 24 C -0.230 4.230 25 C -0.007 4.007 26 O -0.302 6.302 27 C -0.010 4.010 28 C -0.196 4.196 29 H 0.071 0.929 30 H 0.020 0.980 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.075 -20.468 -3.349 23.058 hybrid contribution -0.227 1.120 -0.279 1.177 sum 9.848 -19.347 -3.628 22.011 Atomic orbital electron populations 1.69946 1.06016 1.26885 1.50875 1.24968 0.94863 0.99268 0.95369 0.86505 0.79876 0.83061 0.78056 1.20719 1.21207 1.19763 1.21098 0.93565 0.89605 1.50146 0.91887 1.19804 0.89740 0.86838 0.96511 1.62171 1.37461 1.01519 1.23559 1.20579 0.89796 0.88128 1.02009 1.25830 0.99710 0.96090 0.85666 1.74671 1.04732 1.04516 1.23165 1.85410 1.45861 1.32525 1.34368 1.26314 0.95601 0.96385 0.83366 1.17248 0.97202 0.92180 0.95621 1.21316 0.98304 0.94659 0.93898 1.21141 0.96351 0.96330 1.00294 1.21399 0.97190 0.99257 0.93862 1.21073 1.00017 0.96499 0.96616 1.21302 0.94030 0.95513 0.99475 1.72103 1.10559 1.07248 1.29107 1.21615 0.92613 0.99181 0.88102 1.22935 1.00520 1.02444 0.97140 1.22432 0.84338 0.97687 0.96213 1.87851 1.22070 1.48714 1.71579 1.22483 0.92021 0.95642 0.90804 1.22528 0.97802 1.02411 0.96908 0.92854 0.97978 0.95334 0.88760 0.90753 0.84116 0.85043 0.85503 0.85149 0.84775 0.88974 0.90955 0.89793 0.89568 0.93492 0.89808 0.93548 0.90365 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.97 8.33 -34.44 -0.29 -14.26 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.20 4.92 4.65 -4.98 -0.02 4.90 16 10 N -0.52 -11.21 4.31 -229.30 -0.99 -12.20 16 11 C 0.12 2.34 5.13 -4.98 -0.03 2.31 16 12 C 0.20 3.58 5.76 -156.56 -0.90 2.68 16 13 N -0.37 -6.66 12.15 31.19 0.38 -6.28 16 14 O 0.08 1.23 11.14 16.67 0.19 1.42 16 15 C 0.20 2.87 7.82 -13.85 -0.11 2.76 16 16 C -0.02 -0.23 5.87 -104.98 -0.62 -0.84 16 17 C -0.06 -0.63 9.71 -39.18 -0.38 -1.01 16 18 C -0.12 -0.95 10.03 -39.64 -0.40 -1.34 16 19 C -0.10 -0.65 10.04 -39.49 -0.40 -1.05 16 20 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 21 C -0.08 -0.74 9.73 -39.19 -0.38 -1.12 16 22 N -0.46 -7.33 8.81 -10.17 -0.09 -7.42 16 23 C 0.09 1.82 2.06 -67.53 -0.14 1.68 16 24 C -0.19 -3.25 4.36 -26.59 -0.12 -3.36 16 25 C 0.07 1.06 6.84 37.21 0.25 1.32 16 26 O -0.38 -6.13 10.77 -35.23 -0.38 -6.51 16 27 C 0.07 1.04 6.84 37.21 0.25 1.30 16 28 C -0.16 -2.80 5.36 -26.60 -0.14 -2.94 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.00 0.06 7.35 -51.92 -0.38 -0.32 16 31 H 0.03 0.77 7.67 -51.93 -0.40 0.37 16 32 H 0.09 1.76 7.64 -51.92 -0.40 1.37 16 33 H 0.07 1.30 5.17 -51.93 -0.27 1.04 16 34 H 0.14 1.52 7.88 -52.49 -0.41 1.11 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 36 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.13 1.04 7.95 -52.49 -0.42 0.63 16 39 H 0.09 2.01 7.11 -51.93 -0.37 1.64 16 40 H 0.07 1.27 7.50 -51.93 -0.39 0.88 16 41 H 0.08 1.42 5.34 -51.93 -0.28 1.15 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.40 3.66 -51.93 -0.19 1.21 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -31.19 377.61 -9.82 -41.01 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.43 Total: 1.91 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -3.90 Total: -8.76 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.04 Total: -51.32 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.19 Total: -5.09 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.19 -9.82 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.401 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds