Wall clock time and date at job start Tue Mar 31 2020 04:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47121 * 2 1 4 4 N 1.46498 * 109.46971 * 120.00579 * 2 1 3 5 5 C 1.34945 * 126.03689 * 275.25481 * 4 2 1 6 6 C 1.35322 * 107.74675 * 180.14975 * 5 4 2 7 7 S 1.76198 * 126.03697 * 179.87585 * 6 5 4 8 8 O 1.42099 * 106.40103 * 156.17507 * 7 6 5 9 9 O 1.42092 * 106.40563 * 23.25252 * 7 6 5 10 10 N 1.65605 * 107.21634 * 269.71158 * 7 6 5 11 11 C 1.46491 * 120.00118 * 270.00105 * 10 7 6 12 12 C 1.50701 * 109.47606 * 264.99985 * 11 10 7 13 13 H 1.08000 * 119.99558 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00407 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99918 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00323 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46773 * 359.97438 * 16 14 12 18 18 H 1.48491 * 109.47531 * 119.99820 * 16 14 12 19 19 H 1.48500 * 109.47143 * 240.00090 * 16 14 12 20 20 C 1.46504 * 119.99524 * 90.00570 * 10 7 6 21 21 H 1.08994 * 109.47165 * 359.97438 * 20 10 7 22 22 C 1.52997 * 109.46834 * 239.99783 * 20 10 7 23 23 C 1.52996 * 109.47146 * 120.00152 * 20 10 7 24 24 C 1.53000 * 117.49997 * 184.99862 * 23 20 10 25 25 C 1.53002 * 60.02940 * 252.49592 * 24 23 20 26 26 C 1.39863 * 107.92044 * 359.61166 * 6 5 4 27 27 N 1.30845 * 108.20087 * 0.23935 * 26 6 5 28 28 H 1.08998 * 109.46651 * 299.99366 * 1 2 3 29 29 H 1.09001 * 109.47086 * 59.99499 * 1 2 3 30 30 H 1.09003 * 109.46944 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46735 * 239.99970 * 2 1 3 32 32 H 1.09003 * 109.46825 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47439 * 300.00198 * 3 2 1 34 34 H 1.08998 * 109.46841 * 60.00750 * 3 2 1 35 35 H 1.08006 * 126.12750 * 0.02562 * 5 4 2 36 36 H 1.09006 * 109.47213 * 25.00419 * 11 10 7 37 37 H 1.09004 * 109.47268 * 145.00051 * 11 10 7 38 38 H 0.97006 * 120.00195 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.47563 * 299.99979 * 22 20 10 40 40 H 1.09001 * 109.47479 * 59.99929 * 22 20 10 41 41 H 1.09000 * 109.47335 * 180.02562 * 22 20 10 42 42 H 1.09007 * 115.55004 * 330.66534 * 23 20 10 43 43 H 1.09002 * 117.49833 * 359.97438 * 24 23 20 44 44 H 1.09002 * 117.49953 * 144.99738 * 24 23 20 45 45 H 1.09000 * 117.49996 * 107.50493 * 25 24 23 46 46 H 1.08999 * 117.49664 * 252.51862 * 25 24 23 47 47 H 1.07997 * 125.89978 * 180.22024 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1887 -0.1407 2.4165 6 6 2.6568 -1.1054 3.2420 7 16 3.0494 -0.9088 4.9484 8 8 2.9536 -2.2001 5.5336 9 8 2.3014 0.2093 5.4061 10 7 4.6445 -0.4724 5.0373 11 6 5.6810 -1.5023 5.1413 12 6 6.0314 -1.7179 6.5911 13 1 5.5316 -1.1452 7.3583 14 6 6.9900 -2.6461 6.9380 15 7 7.5982 -3.3438 6.0038 16 14 7.4238 -2.9138 8.7351 17 1 6.6029 -2.0116 9.5822 18 1 7.1506 -4.3256 9.1054 19 1 8.8633 -2.6163 8.9465 20 6 5.0188 0.9438 5.0119 21 1 4.1205 1.5557 4.9313 22 6 5.9263 1.2099 3.8092 23 6 5.7635 1.2976 6.3008 24 6 6.1385 2.7647 6.5200 25 6 7.2229 1.7419 6.1750 26 6 2.7681 -2.2875 2.5029 27 7 2.3856 -2.0402 1.2763 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.9893 0.8861 2.6857 36 1 5.3110 -2.4346 4.7144 37 1 6.5689 -1.1806 4.5969 38 1 8.2724 -3.9972 6.2479 39 1 6.8248 0.5980 3.8894 40 1 5.3958 0.9578 2.8909 41 1 6.2052 2.2635 3.7905 42 1 5.4893 0.7117 7.1781 43 1 5.8550 3.4777 5.7458 44 1 6.1111 3.1439 7.5416 45 1 7.6526 1.7822 5.1741 46 1 7.9086 1.4481 6.9697 47 1 3.1109 -3.2399 2.8795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096427967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:33 Heat of formation + Delta-G solvation = 31.215150 kcal Electronic energy + Delta-G solvation = -29400.413944 eV Core-core repulsion = 25520.299142 eV Total energy + Delta-G solvation = -3880.114803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.29192 -38.16534 -36.46458 -36.03983 -35.03840 -34.61251 -32.41416 -30.48685 -30.07981 -29.45425 -27.75481 -26.70168 -24.27775 -23.53399 -22.20259 -21.78554 -21.53856 -20.21240 -19.14928 -18.39385 -17.48313 -16.78820 -16.43276 -15.72823 -15.52781 -15.39627 -15.01458 -14.72547 -14.38758 -14.28065 -13.94957 -13.49341 -13.26792 -13.12582 -12.84219 -12.68496 -12.56850 -12.32415 -11.90957 -11.84191 -11.78479 -11.68344 -11.44281 -11.38190 -11.25561 -11.14175 -11.01752 -10.90771 -10.71941 -10.66606 -10.43206 -10.33142 -9.98520 -9.72566 -9.53111 -9.38595 -9.27350 -9.06949 -8.34290 -7.97679 -5.96995 -3.97970 1.16264 1.65530 2.31206 2.50182 3.35851 3.44225 3.48251 3.85074 4.10614 4.43123 4.43539 4.49360 4.51432 4.57280 4.62587 4.80161 5.03193 5.10245 5.17967 5.23471 5.24399 5.34111 5.40300 5.42463 5.52189 5.56008 5.65718 5.68007 5.70248 5.70941 5.79720 5.94887 6.03871 6.08184 6.30781 6.39469 6.52491 6.60267 6.67661 6.77166 6.82263 6.97980 7.39558 7.52045 7.52917 7.72405 8.01374 8.31724 9.02343 9.65170 11.11984 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.004171 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.016565 B = 6711.738488 C = 7634.196355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.148 3.852 3 C -0.169 4.169 4 N -0.360 5.360 5 C 0.169 3.831 6 C -0.807 4.807 7 S 2.713 3.287 8 O -0.944 6.944 9 O -0.984 6.984 10 N -0.977 5.977 11 C 0.258 3.742 12 C -0.512 4.512 13 H 0.062 0.938 14 C 0.062 3.938 15 N -0.897 5.897 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.286 1.286 20 C 0.185 3.815 21 H 0.086 0.914 22 C -0.163 4.163 23 C -0.133 4.133 24 C -0.196 4.196 25 C -0.169 4.169 26 C 0.138 3.862 27 N -0.299 5.299 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.184 0.816 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.119 0.881 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 12.025 -12.160 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 C -0.227 4.227 4 N -0.139 5.139 5 C 0.016 3.984 6 C -0.903 4.903 7 S 2.800 3.200 8 O -0.934 6.934 9 O -0.974 6.974 10 N -0.816 5.816 11 C 0.137 3.863 12 C -0.552 4.552 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.212 1.212 20 C 0.078 3.922 21 H 0.104 0.896 22 C -0.222 4.222 23 C -0.153 4.153 24 C -0.234 4.234 25 C -0.206 4.206 26 C -0.051 4.051 27 N -0.118 5.118 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.201 0.799 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -9.719 11.305 -12.907 19.720 hybrid contribution 0.707 0.005 1.026 1.247 sum -9.012 11.310 -11.881 18.716 Atomic orbital electron populations 1.22266 0.93340 1.03555 1.03317 1.21396 0.95069 0.92993 0.85939 1.22253 1.02720 0.93766 1.03983 1.49388 1.48448 1.07843 1.08210 1.22284 0.92888 0.98901 0.84334 1.32185 1.28521 1.00623 1.29009 1.01296 0.72552 0.73378 0.72774 1.93584 1.85647 1.40187 1.73977 1.93476 1.70746 1.53679 1.79524 1.57521 1.24324 1.12364 1.87346 1.19035 0.85731 0.84036 0.97541 1.21507 1.20625 1.20660 0.92389 0.91979 1.24865 0.96204 0.95641 0.97189 1.69925 1.26591 1.24952 1.32195 0.86572 0.77868 0.78196 0.85578 1.19719 1.21002 1.21240 1.20099 0.97266 0.81520 0.93287 0.89622 1.22272 1.01515 1.01055 0.97309 1.22649 0.97343 0.95048 1.00210 1.22990 1.05886 0.92813 1.01678 1.22955 0.92383 1.02619 1.02636 1.23596 0.94038 0.98121 0.89327 1.77392 1.21528 0.92392 1.20486 0.91633 0.90257 0.91437 0.87607 0.91101 0.89682 0.91212 0.79872 0.94471 0.94403 0.92982 0.90696 0.93298 0.92431 0.86301 0.89611 0.89549 0.88736 0.89336 0.78505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 9.52 37.16 0.35 -0.84 16 2 C 0.15 1.26 3.93 -67.93 -0.27 0.99 16 3 C -0.17 -1.05 8.84 37.15 0.33 -0.72 16 4 N -0.36 -4.63 3.52 -54.86 -0.19 -4.83 16 5 C 0.17 2.28 10.33 -17.22 -0.18 2.10 16 6 C -0.81 -13.33 6.17 -40.01 -0.25 -13.58 16 7 S 2.71 53.11 5.78 -107.50 -0.62 52.49 16 8 O -0.94 -22.12 16.84 -57.17 -0.96 -23.09 16 9 O -0.98 -19.59 16.41 -57.17 -0.94 -20.53 16 10 N -0.98 -19.40 2.73 -108.58 -0.30 -19.70 16 11 C 0.26 6.16 4.80 -5.20 -0.02 6.13 16 12 C -0.51 -13.62 8.20 -34.44 -0.28 -13.91 16 13 H 0.06 1.65 6.16 -52.49 -0.32 1.33 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 C 0.19 3.14 3.00 -67.93 -0.20 2.94 16 21 H 0.09 1.33 6.91 -51.93 -0.36 0.97 16 22 C -0.16 -2.38 7.73 37.16 0.29 -2.09 16 23 C -0.13 -2.34 4.77 -90.59 -0.43 -2.77 16 24 C -0.20 -2.78 9.95 -26.73 -0.27 -3.05 16 25 C -0.17 -2.72 9.50 -26.69 -0.25 -2.97 16 26 C 0.14 2.30 11.81 -17.36 -0.21 2.09 16 27 N -0.30 -4.71 12.58 30.62 0.39 -4.32 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.40 7.16 -51.93 -0.37 0.03 16 35 H 0.18 1.90 7.27 -52.48 -0.38 1.52 16 36 H 0.04 0.95 7.61 -51.93 -0.40 0.56 16 37 H 0.04 0.92 6.45 -51.93 -0.33 0.59 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.07 1.24 5.78 -51.93 -0.30 0.94 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.70 7.18 -51.93 -0.37 0.33 16 42 H 0.12 2.42 6.20 -51.93 -0.32 2.10 16 43 H 0.09 1.06 7.93 -51.93 -0.41 0.64 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.42 5.82 -51.93 -0.30 1.12 16 46 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 47 H 0.20 3.09 8.06 -52.49 -0.42 2.66 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -33.63 390.13 -9.76 -43.39 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.24 Total: 3.11 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -1.49 Total: -24.04 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.63 Total: -53.74 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.90 Total: -43.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.62 Total: 52.49 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.63 -9.76 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096427967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.600 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds