Wall clock time and date at job start Tue Mar 31 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48503 * 109.46982 * 239.99694 * 3 2 1 5 5 H 1.48500 * 109.47227 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47322 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47181 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47089 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.46795 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54362 * 68.37778 * 12 11 10 14 14 O 1.42103 * 110.54477 * 291.62061 * 12 11 10 15 15 N 1.65606 * 104.44551 * 179.97438 * 12 11 10 16 16 C 1.47082 * 120.87957 * 90.00276 * 15 12 11 17 17 C 1.53244 * 108.51839 * 231.16019 * 16 15 12 18 18 N 1.46888 * 109.34033 * 306.16995 * 17 16 15 19 19 C 1.46906 * 111.00033 * 187.25258 * 18 17 16 20 20 C 1.50701 * 109.46965 * 170.00037 * 19 18 17 21 21 C 1.41375 * 126.80349 * 95.00441 * 20 19 18 22 22 C 1.35450 * 103.98805 * 179.97438 * 21 20 19 23 23 O 1.34036 * 106.44546 * 359.97438 * 22 21 20 24 24 N 1.20920 * 111.56588 * 359.71145 * 23 22 21 25 25 C 1.46900 * 111.27305 * 63.10479 * 18 17 16 26 26 C 1.47075 * 120.88402 * 269.97593 * 15 12 11 27 27 H 0.97003 * 119.99799 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46491 * 60.00064 * 9 7 2 29 29 H 1.09001 * 109.47080 * 300.00001 * 9 7 2 30 30 H 1.08998 * 109.47099 * 60.00356 * 10 9 7 31 31 H 1.09001 * 109.47283 * 300.00083 * 10 9 7 32 32 H 1.08998 * 109.47049 * 60.00094 * 11 10 9 33 33 H 1.09001 * 109.46937 * 300.00063 * 11 10 9 34 34 H 1.08999 * 109.63044 * 111.44968 * 16 15 12 35 35 H 1.09005 * 109.63108 * 350.86631 * 16 15 12 36 36 H 1.09008 * 109.49105 * 186.20661 * 17 16 15 37 37 H 1.09000 * 109.48896 * 66.13307 * 17 16 15 38 38 H 1.08993 * 109.47164 * 289.99980 * 19 18 17 39 39 H 1.08996 * 109.46920 * 50.00014 * 19 18 17 40 40 H 1.08003 * 128.00564 * 359.95789 * 21 20 19 41 41 H 1.08000 * 126.77410 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.48943 * 56.84985 * 25 18 17 43 43 H 1.08993 * 109.49832 * 176.93585 * 25 18 17 44 44 H 1.09000 * 109.62725 * 248.54951 * 26 15 12 45 45 H 1.09006 * 109.62187 * 8.93397 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 16 2.6589 -6.3659 0.0007 13 8 3.3547 -6.4263 1.2381 14 8 3.3566 -6.4262 -1.2359 15 7 1.7085 -7.7220 0.0006 16 6 1.2758 -8.3405 -1.2618 17 6 -0.2433 -8.5360 -1.2124 18 7 -0.5982 -9.2853 0.0001 19 6 -2.0231 -9.6430 -0.0001 20 6 -2.2983 -10.6107 1.1218 21 6 -2.7651 -10.2939 2.4182 22 6 -2.8488 -11.4950 3.0386 23 8 -2.4552 -12.4124 2.1441 24 7 -2.1601 -11.9046 1.0872 25 6 -0.2439 -8.5358 1.2128 26 6 1.2752 -8.3403 1.2628 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5570 -0.8898 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6044 0.8905 31 1 2.8719 -3.6044 -0.8894 32 1 0.8538 -5.0446 -0.8903 33 1 0.8531 -5.0451 0.8897 34 1 1.7655 -9.3067 -1.3829 35 1 1.5341 -7.6887 -2.0964 36 1 -0.5672 -9.0926 -2.0919 37 1 -0.7348 -7.5632 -1.1958 38 1 -2.6233 -8.7440 0.1400 39 1 -2.2809 -10.1073 -0.9519 40 1 -3.0002 -9.3197 2.8207 41 1 -3.1695 -11.6775 4.0536 42 1 -0.7354 -7.5630 1.1956 43 1 -0.5681 -9.0921 2.0921 44 1 1.7649 -9.3065 1.3843 45 1 1.5363 -7.6898 2.0976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:15 Heat of formation + Delta-G solvation = -2.957843 kcal Electronic energy + Delta-G solvation = -28014.619016 eV Core-core repulsion = 23969.877788 eV Total energy + Delta-G solvation = -4044.741228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.26672 -39.35239 -37.00351 -35.91039 -35.67884 -34.70694 -33.66982 -32.21934 -31.99507 -31.43143 -28.56276 -27.84421 -25.02396 -24.18902 -23.74504 -23.39279 -21.45840 -20.95036 -20.29608 -18.82760 -18.13773 -17.95438 -17.62558 -16.67070 -16.30892 -15.86506 -15.79886 -15.50868 -15.20135 -14.93267 -14.71471 -14.54740 -14.37045 -14.15663 -13.75722 -13.06923 -12.84766 -12.67117 -12.45208 -12.40749 -12.30193 -12.00006 -11.91620 -11.82377 -11.64782 -11.57255 -11.35645 -11.30311 -11.01092 -10.92412 -10.90463 -10.51824 -10.45152 -9.98943 -9.98785 -9.59832 -9.31071 -9.06138 -8.66333 -8.43762 -6.08996 -4.12175 0.38596 1.17221 1.81854 2.67068 2.92905 3.29846 3.33715 3.37001 3.50907 3.78440 3.97781 4.20784 4.22835 4.34610 4.40356 4.70113 4.75020 4.77508 4.83302 4.96983 5.03235 5.06261 5.11524 5.15718 5.18055 5.23580 5.27501 5.33801 5.35761 5.40576 5.62410 5.66342 5.78083 5.82604 5.86981 6.20683 6.40209 6.40495 6.57185 6.62002 6.83041 7.52465 7.62398 7.88766 7.94949 8.29248 8.93800 9.52678 11.02185 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.002383 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.016526 B =11747.473765 C =12731.256179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.598 3.402 13 O -0.959 6.959 14 O -0.958 6.958 15 N -1.006 6.006 16 C 0.128 3.872 17 C 0.040 3.960 18 N -0.530 5.530 19 C 0.132 3.868 20 C 0.023 3.977 21 C -0.233 4.233 22 C -0.059 4.059 23 O 0.099 5.901 24 N -0.347 5.347 25 C 0.036 3.964 26 C 0.129 3.871 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.171 0.829 41 H 0.216 0.784 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 -23.652 3.688 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.695 3.305 13 O -0.949 6.949 14 O -0.948 6.948 15 N -0.843 5.843 16 C 0.002 3.998 17 C -0.089 4.089 18 N -0.256 5.256 19 C 0.004 3.996 20 C -0.137 4.137 21 C -0.254 4.254 22 C -0.141 4.141 23 O 0.032 5.968 24 N -0.050 5.050 25 C -0.093 4.093 26 C 0.003 3.997 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.188 0.812 41 H 0.233 0.767 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.355 -24.867 2.726 25.810 hybrid contribution -1.161 2.651 0.645 2.965 sum -7.516 -22.216 3.372 23.694 Atomic orbital electron populations 1.69947 1.06101 1.26910 1.50535 1.25018 0.94896 0.99384 0.95056 0.86608 0.79577 0.82769 0.78802 1.20091 1.21233 1.20090 1.21217 0.93235 0.90888 1.51188 0.92402 1.19050 0.93500 0.90463 0.97637 1.21503 0.99384 0.91673 1.01952 1.30609 1.16411 1.16055 1.10946 1.05512 0.75906 0.74878 0.74226 1.93561 1.70280 1.85817 1.45245 1.93564 1.70177 1.85816 1.45290 1.57990 1.70775 1.43855 1.11711 1.21471 0.93242 0.99842 0.85204 1.22553 0.96640 0.97090 0.92637 1.61792 1.16532 1.44600 1.02683 1.20321 0.89063 0.94949 0.95315 1.23419 1.02012 0.91494 0.96741 1.22810 1.07738 1.00621 0.94276 1.26030 1.01745 0.88121 0.98182 1.84872 1.60901 1.35081 1.15986 1.73872 1.16911 1.11058 1.03175 1.22605 0.96548 0.96928 0.93262 1.21439 0.93295 0.99719 0.85226 0.92834 0.96193 0.96197 0.91596 0.91585 0.85625 0.85675 0.90287 0.88513 0.89203 0.93543 0.92056 0.88757 0.81155 0.76743 0.93599 0.89567 0.90495 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C -0.61 -9.20 6.18 37.16 0.23 -8.97 16 12 S 2.60 38.42 5.42 -107.50 -0.58 37.84 16 13 O -0.96 -16.72 16.78 -57.54 -0.97 -17.69 16 14 O -0.96 -16.68 16.79 -57.54 -0.97 -17.65 16 15 N -1.01 -11.60 3.26 -113.23 -0.37 -11.97 16 16 C 0.13 1.26 6.47 -3.60 -0.02 1.24 16 17 C 0.04 0.33 5.62 -3.70 -0.02 0.31 16 18 N -0.53 -4.72 4.62 -235.77 -1.09 -5.81 16 19 C 0.13 1.04 5.56 -4.97 -0.03 1.01 16 20 C 0.02 0.20 6.01 -82.10 -0.49 -0.29 16 21 C -0.23 -1.49 9.99 -39.38 -0.39 -1.88 16 22 C -0.06 -0.32 12.30 29.74 0.37 0.05 16 23 O 0.10 0.85 11.20 17.19 0.19 1.04 16 24 N -0.35 -3.62 12.07 33.42 0.40 -3.22 16 25 C 0.04 0.31 5.47 -3.70 -0.02 0.29 16 26 C 0.13 1.31 6.47 -3.61 -0.02 1.29 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.12 1.69 8.14 -51.92 -0.42 1.26 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.92 7.20 -51.93 -0.37 0.55 16 36 H 0.09 0.60 7.99 -51.92 -0.41 0.19 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.42 8.12 -51.93 -0.42 -0.01 16 39 H 0.09 0.70 7.97 -51.93 -0.41 0.29 16 40 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.22 0.23 8.06 -52.49 -0.42 -0.20 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.68 6.18 -51.93 -0.32 0.36 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 0.95 7.19 -51.93 -0.37 0.57 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -36.30 381.28 -9.94 -46.24 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.93 Total: -3.26 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -1.09 Total: -22.06 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.32 Total: -46.63 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -1.74 Total: -34.29 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 38.42 SS G_CDS: -0.58 Total: 37.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.30 -9.94 -46.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.282 kcal (2) G-P(sol) polarization free energy of solvation -36.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds