Wall clock time and date at job start Tue Mar 31 2020 05:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.46657 * 2 1 4 4 C 1.52997 * 109.47244 * 119.99975 * 2 1 3 5 5 C 1.52999 * 109.47002 * 184.99798 * 4 2 1 6 6 C 1.50699 * 109.46880 * 179.97438 * 5 4 2 7 7 C 1.34857 * 125.88845 * 85.02818 * 6 5 4 8 8 C 1.40884 * 107.41641 * 179.97438 * 7 6 5 9 9 C 1.34848 * 107.41902 * 0.02562 * 8 7 6 10 10 N 1.36338 * 125.89357 * 264.99814 * 6 5 4 11 11 C 1.46497 * 125.63560 * 359.97438 * 10 6 5 12 12 N 1.46501 * 109.46618 * 240.00036 * 2 1 3 13 13 C 1.34770 * 120.00035 * 85.00018 * 12 2 1 14 14 O 1.21580 * 120.00329 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00042 * 179.97438 * 13 12 2 16 16 C 1.39247 * 119.99974 * 176.69755 * 15 13 12 17 17 C 1.39487 * 119.82923 * 217.51681 * 16 15 13 18 18 C 1.36372 * 120.16349 * 179.76103 * 17 16 15 19 19 C 1.40869 * 119.83079 * 0.50974 * 18 17 16 20 20 C 1.41159 * 120.16438 * 179.71937 * 19 18 17 21 21 H 1.08000 * 119.99903 * 157.94676 * 20 19 18 22 22 C 1.39893 * 119.99974 * 337.95291 * 20 19 18 23 23 N 1.30873 * 119.99895 * 327.61322 * 22 20 19 24 24 Si 1.86806 * 119.99907 * 147.61245 * 22 20 19 25 25 H 1.48498 * 109.46822 * 94.98741 * 24 22 20 26 26 H 1.48499 * 109.47064 * 214.98613 * 24 22 20 27 27 H 1.48500 * 109.47121 * 334.98702 * 24 22 20 28 28 C 1.40864 * 119.67130 * 359.74189 * 19 18 17 29 29 C 1.36378 * 119.83054 * 0.02562 * 28 19 18 30 30 H 1.09005 * 109.46968 * 299.99992 * 1 2 3 31 31 H 1.08994 * 109.47134 * 59.99930 * 1 2 3 32 32 H 1.08995 * 109.47073 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47046 * 64.99648 * 4 2 1 34 34 H 1.09003 * 109.47247 * 304.99914 * 4 2 1 35 35 H 1.09003 * 109.46600 * 59.99999 * 5 4 2 36 36 H 1.08994 * 109.47403 * 299.99970 * 5 4 2 37 37 H 1.08001 * 126.28716 * 359.71907 * 7 6 5 38 38 H 1.08005 * 126.29030 * 179.97438 * 8 7 6 39 39 H 1.08003 * 125.89168 * 179.97438 * 9 8 7 40 40 H 1.09003 * 109.47451 * 89.99774 * 11 10 6 41 41 H 1.09004 * 109.46889 * 209.99768 * 11 10 6 42 42 H 1.09005 * 109.47260 * 329.99350 * 11 10 6 43 43 H 0.96997 * 119.99778 * 264.99272 * 12 2 1 44 44 H 0.96994 * 119.99778 * 356.69789 * 15 13 12 45 45 H 1.07993 * 119.91264 * 0.02562 * 17 16 15 46 46 H 1.08001 * 120.08321 * 180.25175 * 18 17 16 47 47 H 0.97000 * 120.00075 * 180.02562 * 23 22 20 48 48 H 1.08004 * 120.08627 * 179.97438 * 28 19 18 49 49 H 1.07996 * 119.91680 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0672 -1.3231 2.5444 7 6 4.3312 -2.6419 2.6440 8 6 4.7769 -2.8846 3.9583 9 6 4.7678 -1.7051 4.6119 10 7 4.3337 -0.7429 3.7490 11 6 4.1796 0.6795 4.0639 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8574 1.1612 -2.4119 15 7 2.5966 -0.6536 -3.4575 16 6 2.6644 0.0226 -4.6729 17 6 2.3536 -0.6458 -5.8571 18 6 2.4131 0.0111 -7.0506 19 6 2.8000 1.3651 -7.0868 20 6 2.8697 2.0502 -8.3190 21 1 2.8111 3.1284 -8.3414 22 6 3.0144 1.3327 -9.5111 23 7 3.6886 0.2110 -9.5219 24 14 2.2454 1.9755 -11.0875 25 1 3.2546 2.7552 -11.8483 26 1 1.7783 0.8324 -11.9123 27 1 1.0922 2.8499 -10.7549 28 6 3.1175 2.0318 -5.8872 29 6 3.0488 1.3630 -4.7007 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.7517 -1.7715 1.2056 34 1 1.6055 -0.2617 2.1370 35 1 3.8532 0.4370 1.3572 36 1 3.9995 -1.0728 0.4259 37 1 4.2174 -3.3774 1.8614 38 1 5.0710 -3.8399 4.3674 39 1 5.0552 -1.5494 5.6413 40 1 3.1723 0.8617 4.4386 41 1 4.9070 0.9642 4.8242 42 1 4.3448 1.2711 3.1634 43 1 2.2490 -1.6317 -1.1526 44 1 2.8729 -1.5817 -3.4028 45 1 2.0610 -1.6850 -5.8280 46 1 2.1682 -0.5066 -7.9663 47 1 3.7893 -0.2864 -10.3485 48 1 3.4154 3.0698 -5.9072 49 1 3.2924 1.8727 -3.7802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096433894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:42 Heat of formation + Delta-G solvation = 31.339322 kcal Electronic energy + Delta-G solvation = -28271.367404 eV Core-core repulsion = 24391.647130 eV Total energy + Delta-G solvation = -3879.720275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.43824 -39.92295 -37.70323 -36.36835 -34.32038 -33.18241 -33.08701 -32.69651 -30.60351 -29.47569 -28.65677 -27.71905 -26.62321 -24.92834 -23.88771 -22.03440 -21.09961 -20.81430 -20.50330 -20.06394 -19.29414 -17.98630 -17.26431 -17.15005 -16.59022 -15.58471 -15.54813 -15.16031 -14.89630 -14.55557 -14.22106 -13.96418 -13.86170 -13.68775 -13.41309 -13.15532 -13.00564 -12.73050 -12.62729 -12.56167 -12.29194 -12.24992 -12.03359 -11.97972 -11.87620 -11.54714 -11.33817 -11.27040 -11.11101 -10.90677 -10.84451 -10.48441 -10.14165 -9.67989 -9.53109 -9.10519 -8.87271 -8.80653 -8.63540 -8.17495 -7.48816 -7.07595 -6.82320 -4.21519 2.02736 2.71153 2.72059 2.84722 3.05362 3.07734 3.12271 3.15856 3.24635 3.77567 3.92894 4.36211 4.45387 4.56171 4.67716 4.74205 4.79477 4.85235 4.87680 5.05986 5.07360 5.27973 5.38377 5.42954 5.48072 5.48830 5.62835 5.70134 5.72666 5.88013 6.01746 6.10172 6.18013 6.22994 6.24366 6.48094 6.72509 6.83514 6.84436 6.93086 7.03657 7.05643 7.15841 7.16523 7.33602 7.38284 7.64782 7.93847 8.01960 8.08798 8.32119 8.57750 8.61256 8.89614 8.97374 9.20672 10.07294 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024490 B = 0.001800 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.033293 B =15551.087642 C =15790.014087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.163 3.837 3 H 0.087 0.913 4 C -0.117 4.117 5 C -0.051 4.051 6 C 0.021 3.979 7 C -0.199 4.199 8 C -0.200 4.200 9 C -0.023 4.023 10 N -0.448 5.448 11 C 0.070 3.930 12 N -0.748 5.748 13 C 0.695 3.305 14 O -0.581 6.581 15 N -0.666 5.666 16 C 0.001 3.999 17 C -0.105 4.105 18 C -0.170 4.170 19 C 0.111 3.889 20 C -0.468 4.468 21 H 0.081 0.919 22 C 0.088 3.912 23 N -0.772 5.772 24 Si 0.894 3.106 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.223 4.223 29 C -0.066 4.066 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.390 0.610 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.282 0.718 48 H 0.093 0.907 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 -5.708 23.602 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.057 3.943 3 H 0.105 0.895 4 C -0.156 4.156 5 C -0.089 4.089 6 C -0.090 4.090 7 C -0.224 4.224 8 C -0.224 4.224 9 C -0.152 4.152 10 N -0.124 5.124 11 C -0.072 4.072 12 N -0.405 5.405 13 C 0.396 3.604 14 O -0.458 6.458 15 N -0.312 5.312 16 C -0.092 4.092 17 C -0.126 4.126 18 C -0.190 4.190 19 C 0.108 3.892 20 C -0.496 4.496 21 H 0.099 0.901 22 C -0.133 4.133 23 N -0.395 5.395 24 Si 0.718 3.282 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.181 1.181 28 C -0.243 4.243 29 C -0.087 4.087 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.176 0.824 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.224 0.776 44 H 0.222 0.778 45 H 0.106 0.894 46 H 0.124 0.876 47 H 0.093 0.907 48 H 0.111 0.889 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.564 -4.419 23.511 23.929 hybrid contribution -0.013 -0.825 -0.609 1.025 sum -0.578 -5.244 22.902 23.502 Atomic orbital electron populations 1.22196 0.95619 1.01915 1.02503 1.20723 0.93653 0.97201 0.82709 0.89533 1.21878 0.94624 1.01718 0.97352 1.20138 0.95400 0.99887 0.93453 1.20395 1.07677 0.93363 0.87596 1.20686 1.09268 0.94421 0.97998 1.20866 1.09053 0.97393 0.95121 1.21753 1.08792 0.88315 0.96389 1.43937 1.51077 1.07440 1.09997 1.22015 1.02926 0.79255 1.03011 1.45225 1.72857 1.13294 1.09121 1.16034 0.78618 0.85456 0.80325 1.90898 1.56809 1.14157 1.83968 1.42071 1.67172 1.14598 1.07390 1.16851 1.16243 0.93604 0.82497 1.20156 1.02255 0.97779 0.92361 1.20597 1.06999 0.95871 0.95538 1.17584 0.87653 0.91620 0.92336 1.19477 1.44761 0.94991 0.90333 0.90109 1.25917 0.92076 0.94087 1.01196 1.69951 1.25677 1.13980 1.29862 0.86537 0.80964 0.79832 0.80885 1.19525 1.19939 1.18138 1.20596 1.11746 0.99438 0.92537 1.20318 0.98001 0.93183 0.97153 0.92146 0.91619 0.92708 0.90888 0.90792 0.91314 0.89479 0.84872 0.84931 0.82439 0.90960 0.90000 0.89726 0.77565 0.77760 0.89386 0.87555 0.90699 0.88857 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.16 1.73 2.57 -67.93 -0.17 1.55 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -0.94 4.74 -26.73 -0.13 -1.06 16 5 C -0.05 -0.44 5.37 -27.88 -0.15 -0.59 16 6 C 0.02 0.20 6.14 -81.79 -0.50 -0.30 16 7 C -0.20 -2.02 10.76 -39.78 -0.43 -2.45 16 8 C -0.20 -1.90 10.86 -39.78 -0.43 -2.34 16 9 C -0.02 -0.20 11.43 -16.75 -0.19 -0.39 16 10 N -0.45 -3.87 3.15 -119.90 -0.38 -4.25 16 11 C 0.07 0.38 10.91 59.85 0.65 1.04 16 12 N -0.75 -9.00 4.53 -58.67 -0.27 -9.27 16 13 C 0.69 12.13 8.34 -86.92 -0.72 11.40 16 14 O -0.58 -12.65 13.62 5.30 0.07 -12.57 16 15 N -0.67 -11.88 5.30 -14.10 -0.07 -11.95 16 16 C 0.00 0.01 6.25 -83.57 -0.52 -0.51 16 17 C -0.11 -2.43 9.90 -39.79 -0.39 -2.83 16 18 C -0.17 -4.40 8.74 -39.26 -0.34 -4.75 16 19 C 0.11 3.01 5.57 -106.80 -0.60 2.41 16 20 C -0.47 -12.53 8.94 -37.85 -0.34 -12.87 16 21 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 22 C 0.09 2.21 4.77 -17.34 -0.08 2.13 16 23 N -0.77 -19.69 11.78 55.54 0.65 -19.04 16 24 Si 0.89 18.43 29.66 -169.99 -5.04 13.39 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 28 C -0.22 -5.78 9.74 -39.26 -0.38 -6.17 16 29 C -0.07 -1.63 8.59 -39.79 -0.34 -1.97 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.60 6.92 -51.93 -0.36 0.24 16 36 H 0.09 0.80 7.75 -51.93 -0.40 0.40 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.44 6.95 -51.93 -0.36 0.08 16 43 H 0.39 3.61 8.62 -40.82 -0.35 3.26 16 44 H 0.39 5.50 8.84 -40.82 -0.36 5.14 16 45 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.11 2.79 6.53 -52.49 -0.34 2.45 16 47 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 48 H 0.09 2.31 8.06 -52.48 -0.42 1.88 16 49 H 0.10 2.50 6.45 -52.49 -0.34 2.16 16 LS Contribution 405.71 15.07 6.11 6.11 Total: -1.00 -32.41 405.71 -11.18 -43.60 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -7.54 Total: 13.04 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -4.72 Total: -19.06 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.06 Total: -44.50 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.04 Total: 13.39 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.41 -11.18 -43.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096433894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.936 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds