Wall clock time and date at job start Tue Mar 31 2020 05:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47341 * 2 1 4 4 C 1.52997 * 109.47396 * 239.99777 * 2 1 3 5 5 C 1.53002 * 109.47217 * 175.00197 * 4 2 1 6 6 C 1.50705 * 109.46679 * 179.97438 * 5 4 2 7 7 C 1.34848 * 125.88702 * 84.69746 * 6 5 4 8 8 C 1.40895 * 107.41666 * 179.88277 * 7 6 5 9 9 C 1.34854 * 107.41196 * 0.37261 * 8 7 6 10 10 N 1.36340 * 108.22329 * 359.77134 * 9 8 7 11 11 C 1.46497 * 125.63783 * 180.02562 * 10 9 8 12 12 N 1.46498 * 109.46784 * 119.99713 * 2 1 3 13 13 C 1.34777 * 120.00249 * 274.99735 * 12 2 1 14 14 O 1.21582 * 119.99600 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00089 * 180.02562 * 13 12 2 16 16 C 1.39244 * 119.99949 * 183.29653 * 15 13 12 17 17 C 1.39484 * 119.83160 * 322.12629 * 16 15 13 18 18 C 1.36376 * 120.16459 * 179.71597 * 17 16 15 19 19 C 1.40866 * 119.83212 * 0.58363 * 18 17 16 20 20 C 1.41155 * 120.16708 * 179.67470 * 19 18 17 21 21 H 1.07996 * 120.00106 * 158.01597 * 20 19 18 22 22 C 1.39897 * 119.99439 * 338.01665 * 20 19 18 23 23 N 1.30883 * 120.00381 * 327.57909 * 22 20 19 24 24 Si 1.86801 * 119.99891 * 147.58667 * 22 20 19 25 25 H 1.48504 * 109.47175 * 94.98251 * 24 22 20 26 26 H 1.48495 * 109.47253 * 214.98112 * 24 22 20 27 27 H 1.48496 * 109.46880 * 334.98543 * 24 22 20 28 28 C 1.40867 * 119.67149 * 359.69180 * 19 18 17 29 29 C 1.36380 * 119.83047 * 0.02562 * 28 19 18 30 30 H 1.08999 * 109.47270 * 300.00531 * 1 2 3 31 31 H 1.09000 * 109.46593 * 60.00356 * 1 2 3 32 32 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46961 * 295.00203 * 4 2 1 34 34 H 1.09001 * 109.46909 * 54.99786 * 4 2 1 35 35 H 1.08992 * 109.47240 * 299.99664 * 5 4 2 36 36 H 1.09004 * 109.46800 * 60.00134 * 5 4 2 37 37 H 1.08000 * 126.29660 * 0.02562 * 7 6 5 38 38 H 1.07996 * 126.29289 * 180.17228 * 8 7 6 39 39 H 1.08006 * 125.88563 * 179.80975 * 9 8 7 40 40 H 1.08997 * 109.47365 * 269.97676 * 11 10 9 41 41 H 1.09003 * 109.47000 * 29.98112 * 11 10 9 42 42 H 1.09001 * 109.47164 * 149.97977 * 11 10 9 43 43 H 0.96999 * 120.00153 * 95.00008 * 12 2 1 44 44 H 0.97006 * 120.00340 * 3.29024 * 15 13 12 45 45 H 1.07994 * 119.91375 * 0.02562 * 17 16 15 46 46 H 1.08004 * 120.08404 * 180.25375 * 18 17 16 47 47 H 0.96994 * 120.00396 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.08806 * 179.97438 * 28 19 18 49 49 H 1.08001 * 119.91956 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0673 -1.3244 -2.5437 7 6 4.1466 -0.7993 -3.7832 8 6 4.6698 -1.7958 -4.6307 9 6 4.8825 -2.8945 -3.8783 10 7 4.5146 -2.6112 -2.5964 11 6 4.5882 -3.5364 -1.4629 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8575 1.1614 2.4118 15 7 2.5967 -0.6534 3.4575 16 6 2.6647 0.0229 4.6728 17 6 3.0506 1.3630 4.7005 18 6 3.1139 2.0335 5.8864 19 6 2.8004 1.3658 7.0865 20 6 2.8703 2.0510 8.3186 21 1 2.3138 1.6888 9.1703 22 6 3.6605 3.1995 8.4363 23 7 4.7615 3.3108 7.7374 24 14 3.1443 4.5740 9.5911 25 1 3.8238 4.4021 10.9003 26 1 3.5256 5.8835 9.0037 27 1 1.6730 4.5291 9.7875 28 6 2.4172 0.0107 7.0510 29 6 2.3528 -0.6450 5.8570 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7517 -1.7716 -1.2055 34 1 1.6054 -0.2618 -2.1369 35 1 3.8533 0.4368 -1.3573 36 1 3.9995 -1.0729 -0.4258 37 1 3.8634 0.2019 -4.0727 38 1 4.8619 -1.6988 -5.6890 39 1 5.2770 -3.8363 -4.2304 40 1 3.6523 -4.0894 -1.3838 41 1 5.4110 -4.2347 -1.6168 42 1 4.7563 -2.9735 -0.5448 43 1 2.2489 -1.6317 1.1527 44 1 2.8729 -1.5817 3.4029 45 1 3.2949 1.8722 3.7801 46 1 3.4089 3.0723 5.9059 47 1 5.3095 4.1069 7.8193 48 1 2.1758 -0.5078 7.9671 49 1 2.0595 -1.6841 5.8281 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096433895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:46 Heat of formation + Delta-G solvation = 31.604232 kcal Electronic energy + Delta-G solvation = -28473.030583 eV Core-core repulsion = 24593.321796 eV Total energy + Delta-G solvation = -3879.708788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.42934 -39.93829 -37.71351 -36.36761 -34.34749 -33.18137 -33.07656 -32.70991 -30.60732 -29.43317 -28.72117 -27.71049 -26.61551 -24.94637 -23.88061 -21.94097 -21.22065 -20.78206 -20.62774 -19.97968 -19.28431 -17.98274 -17.31123 -17.11818 -16.62303 -15.62862 -15.53828 -15.16949 -14.93535 -14.54576 -14.16046 -13.99749 -13.82365 -13.59729 -13.37120 -13.28296 -13.00318 -12.70036 -12.65401 -12.50602 -12.30724 -12.24753 -12.04185 -11.99282 -11.90921 -11.56269 -11.24959 -11.13997 -11.10330 -11.06816 -10.88342 -10.62988 -10.06141 -9.64026 -9.45775 -9.01389 -8.89139 -8.81643 -8.79695 -8.16707 -7.48800 -7.10388 -6.80068 -4.23011 2.03763 2.71373 2.72803 2.85542 3.04672 3.08703 3.11145 3.13855 3.23785 3.76509 3.93020 4.37344 4.46175 4.56158 4.67730 4.71978 4.77422 4.87714 4.91196 5.04296 5.09055 5.27212 5.41040 5.45566 5.49320 5.49900 5.65822 5.70475 5.72608 5.88624 6.03082 6.10952 6.18148 6.18992 6.24073 6.43671 6.70334 6.85415 6.85757 6.90724 7.04586 7.05492 7.12952 7.16935 7.33483 7.34261 7.64345 7.90482 8.02162 8.08911 8.28355 8.55035 8.62916 8.88636 8.96490 9.19028 10.07532 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.001944 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.502741 B =14402.798641 C =14516.377501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.161 3.839 3 H 0.090 0.910 4 C -0.117 4.117 5 C -0.051 4.051 6 C 0.021 3.979 7 C -0.200 4.200 8 C -0.200 4.200 9 C -0.023 4.023 10 N -0.448 5.448 11 C 0.070 3.930 12 N -0.749 5.749 13 C 0.694 3.306 14 O -0.577 6.577 15 N -0.667 5.667 16 C 0.000 4.000 17 C -0.074 4.074 18 C -0.172 4.172 19 C 0.110 3.890 20 C -0.468 4.468 21 H 0.081 0.919 22 C 0.088 3.912 23 N -0.769 5.769 24 Si 0.895 3.105 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.258 1.258 28 C -0.222 4.222 29 C -0.099 4.099 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.388 0.612 44 H 0.388 0.612 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.283 0.717 48 H 0.094 0.906 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.693 -12.152 -19.598 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 H 0.108 0.892 4 C -0.155 4.155 5 C -0.089 4.089 6 C -0.090 4.090 7 C -0.224 4.224 8 C -0.225 4.225 9 C -0.152 4.152 10 N -0.124 5.124 11 C -0.072 4.072 12 N -0.405 5.405 13 C 0.395 3.605 14 O -0.454 6.454 15 N -0.313 5.313 16 C -0.092 4.092 17 C -0.094 4.094 18 C -0.192 4.192 19 C 0.108 3.892 20 C -0.495 4.495 21 H 0.099 0.901 22 C -0.134 4.134 23 N -0.392 5.392 24 Si 0.718 3.282 25 H -0.195 1.195 26 H -0.199 1.199 27 H -0.181 1.181 28 C -0.242 4.242 29 C -0.119 4.119 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.176 0.824 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.220 0.780 44 H 0.220 0.780 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.728 -11.151 -19.313 22.313 hybrid contribution 0.183 -0.442 0.383 0.613 sum -0.545 -11.593 -18.930 22.205 Atomic orbital electron populations 1.22191 0.95584 1.01769 1.02646 1.20757 0.93682 0.97440 0.82533 0.89214 1.21882 0.94717 1.01065 0.97841 1.20146 0.95245 1.00476 0.93059 1.20396 1.06342 0.84993 0.97261 1.20694 1.09219 1.00270 0.92257 1.20866 1.08291 0.93945 0.99372 1.21755 1.09131 1.00837 0.83497 1.43931 1.49706 1.10698 1.08071 1.22014 1.03155 0.93403 0.88651 1.45241 1.72986 1.13053 1.09267 1.16048 0.78685 0.85485 0.80293 1.90917 1.56484 1.14076 1.83876 1.42059 1.67313 1.14456 1.07462 1.16857 1.15943 0.93930 0.82472 1.20418 0.98334 0.93152 0.97525 1.20716 1.07834 0.99401 0.91260 1.17586 0.88273 0.90333 0.93043 1.19465 1.24618 1.07980 0.97478 0.90127 1.25928 0.92848 0.99037 0.95574 1.69947 1.07791 1.26999 1.34416 0.86527 0.80947 0.80286 0.80402 1.19545 1.19884 1.18131 1.20442 1.13463 0.94935 0.95384 1.20026 1.01863 0.97661 0.92349 0.91630 0.91936 0.92897 0.91801 0.89905 0.89533 0.91194 0.84864 0.84946 0.82439 0.90976 0.89963 0.89742 0.77962 0.77979 0.87938 0.87650 0.90624 0.88761 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.48 37.16 0.35 -1.40 16 2 C 0.16 1.74 2.57 -67.93 -0.17 1.57 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.78 16 4 C -0.12 -0.95 4.74 -26.73 -0.13 -1.08 16 5 C -0.05 -0.45 5.38 -27.88 -0.15 -0.60 16 6 C 0.02 0.21 6.14 -81.79 -0.50 -0.29 16 7 C -0.20 -2.06 10.76 -39.78 -0.43 -2.49 16 8 C -0.20 -1.93 10.86 -39.78 -0.43 -2.36 16 9 C -0.02 -0.20 11.43 -16.75 -0.19 -0.39 16 10 N -0.45 -3.90 3.15 -119.90 -0.38 -4.28 16 11 C 0.07 0.39 10.91 59.85 0.65 1.04 16 12 N -0.75 -8.87 4.53 -58.68 -0.27 -9.13 16 13 C 0.69 12.09 8.34 -86.92 -0.72 11.36 16 14 O -0.58 -12.75 13.63 5.29 0.07 -12.67 16 15 N -0.67 -11.65 5.30 -14.10 -0.07 -11.72 16 16 C 0.00 0.01 6.25 -83.56 -0.52 -0.51 16 17 C -0.07 -1.87 8.59 -39.79 -0.34 -2.21 16 18 C -0.17 -4.65 8.74 -39.26 -0.34 -5.00 16 19 C 0.11 2.98 5.57 -106.80 -0.60 2.39 16 20 C -0.47 -12.47 8.94 -37.85 -0.34 -12.81 16 21 H 0.08 2.06 8.02 -52.49 -0.42 1.64 16 22 C 0.09 2.22 4.77 -17.34 -0.08 2.13 16 23 N -0.77 -19.95 11.78 55.55 0.65 -19.29 16 24 Si 0.89 18.61 29.66 -169.99 -5.04 13.57 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 28 C -0.22 -5.44 9.74 -39.26 -0.38 -5.82 16 29 C -0.10 -2.18 9.90 -39.79 -0.39 -2.57 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.62 6.53 -51.93 -0.34 0.28 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.44 6.94 -51.93 -0.36 0.08 16 43 H 0.39 3.38 8.62 -40.82 -0.35 3.02 16 44 H 0.39 5.20 8.84 -40.82 -0.36 4.84 16 45 H 0.10 2.61 6.45 -52.49 -0.34 2.27 16 46 H 0.11 2.93 6.52 -52.48 -0.34 2.59 16 47 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 48 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 49 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 405.71 15.07 6.11 6.11 Total: -1.00 -32.60 405.71 -11.18 -43.78 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -7.54 Total: 12.69 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -4.72 Total: -19.05 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.06 Total: -44.43 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.04 Total: 13.57 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.60 -11.18 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096433895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.384 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds