Wall clock time and date at job start Tue Mar 31 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86793 * 120.00143 * 2 1 4 4 H 1.48501 * 109.47214 * 270.00213 * 3 2 1 5 5 H 1.48503 * 109.47054 * 30.00356 * 3 2 1 6 6 H 1.48503 * 109.47135 * 150.00394 * 3 2 1 7 7 C 1.38657 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 179.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47566 * 90.00210 * 15 14 13 17 17 C 1.34775 * 120.00359 * 179.97438 * 16 15 14 18 18 O 1.21588 * 119.99577 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00256 * 179.97438 * 17 16 15 20 20 C 1.48041 * 125.64754 * 359.69542 * 19 17 16 21 21 C 1.53689 * 103.48305 * 156.61696 * 20 19 17 22 22 H 1.09005 * 108.26817 * 285.75954 * 21 20 19 23 23 C 1.50012 * 114.85318 * 164.05753 * 21 20 19 24 24 C 1.49620 * 113.25026 * 281.50930 * 23 21 20 25 25 C 1.29187 * 123.39109 * 347.46690 * 24 23 21 26 26 C 1.49082 * 124.68256 * 1.90290 * 25 24 23 27 27 C 1.53167 * 112.90032 * 342.21493 * 26 25 24 28 28 H 1.08998 * 112.88720 * 273.79176 * 27 26 25 29 29 C 1.47280 * 125.65352 * 180.02562 * 19 17 16 30 30 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 31 31 H 0.97001 * 119.99814 * 359.97438 * 1 2 3 32 32 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 33 33 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 34 34 H 1.08001 * 119.93142 * 180.29665 * 13 12 11 35 35 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 36 36 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 37 37 H 0.97000 * 119.99676 * 359.97438 * 16 15 14 38 38 H 1.09007 * 110.60029 * 275.22971 * 20 19 17 39 39 H 1.08998 * 110.60541 * 38.17833 * 20 19 17 40 40 H 1.09004 * 108.71128 * 160.54024 * 23 21 20 41 41 H 1.09000 * 108.73517 * 42.48757 * 23 21 20 42 42 H 1.08004 * 118.30059 * 167.44897 * 24 23 21 43 43 H 1.08004 * 117.66117 * 181.88327 * 25 24 23 44 44 H 1.09003 * 108.80201 * 221.33361 * 26 25 24 45 45 H 1.09001 * 108.79643 * 103.09844 * 26 25 24 46 46 H 1.09008 * 110.00565 * 296.83208 * 29 19 17 47 47 H 1.08997 * 110.00847 * 58.15538 * 29 19 17 48 48 H 1.07996 * 120.03714 * 179.97438 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1060 11 6 3.4574 -3.4390 0.0992 12 6 4.2024 -4.5969 0.2025 13 6 3.5685 -5.8204 0.3237 14 6 2.1875 -5.8886 0.3361 15 6 1.5010 -7.2235 0.4688 16 7 1.2842 -7.5224 1.8864 17 6 0.6811 -8.6721 2.2482 18 8 0.3174 -9.4615 1.3979 19 7 0.4821 -8.9474 3.5524 20 6 0.8795 -8.0833 4.6870 21 6 -0.0642 -8.5210 5.8184 22 1 -1.0567 -8.1217 5.6092 23 6 0.3518 -8.0825 7.1913 24 6 1.4427 -8.9238 7.7749 25 6 1.8131 -10.0555 7.2738 26 6 1.2451 -10.6616 6.0358 27 6 -0.1032 -10.0529 5.6386 28 1 -0.9472 -10.5316 6.1352 29 6 -0.1605 -10.1607 4.0855 30 6 1.4366 -4.7343 0.2280 31 1 -0.4850 0.8401 0.0004 32 1 3.9529 -2.4836 0.0087 33 1 5.2812 -4.5469 0.1932 34 1 4.1534 -6.7242 0.4091 35 1 0.5411 -7.1912 -0.0466 36 1 2.1256 -7.9990 0.0253 37 1 1.5747 -6.8929 2.5647 38 1 1.9192 -8.2635 4.9605 39 1 0.7227 -7.0328 4.4423 40 1 -0.5153 -8.1272 7.8504 41 1 0.6961 -7.0496 7.1397 42 1 1.9468 -8.5664 8.6607 43 1 2.5900 -10.6015 7.7883 44 1 1.1135 -11.7316 6.1970 45 1 1.9507 -10.5162 5.2179 46 1 -1.1976 -10.2101 3.7532 47 1 0.3803 -11.0463 3.7520 48 1 0.3580 -4.7882 0.2374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096440246.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:03 Heat of formation + Delta-G solvation = -11.738433 kcal Electronic energy + Delta-G solvation = -28951.727855 eV Core-core repulsion = 24972.420926 eV Total energy + Delta-G solvation = -3979.306929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.94792 -39.37675 -38.83303 -36.82260 -35.44371 -34.45088 -32.35550 -32.09999 -31.53825 -30.36849 -29.10413 -27.68096 -26.19681 -25.33613 -24.53523 -22.64720 -21.72076 -21.38643 -20.80664 -19.98972 -18.46945 -17.64070 -17.50244 -16.95472 -16.76934 -15.88196 -15.78352 -15.19292 -14.95488 -14.65043 -14.48883 -14.33714 -14.08652 -14.01973 -13.85388 -13.62070 -13.40788 -13.03355 -12.94218 -12.71789 -12.50130 -12.35504 -12.18990 -12.10568 -11.97012 -11.67090 -11.39829 -11.19192 -10.95395 -10.81490 -10.73537 -10.69029 -10.48441 -10.43606 -10.14499 -9.41779 -9.30548 -9.06547 -8.90292 -8.54679 -8.25548 -7.33480 -6.50160 -4.09693 1.85859 1.98238 2.26237 2.70289 3.09311 3.10028 3.14872 3.25855 3.89063 3.92259 4.09162 4.22726 4.26178 4.54317 4.76919 4.84741 4.88785 4.94352 4.97236 5.04394 5.06322 5.11548 5.26285 5.28110 5.36206 5.44415 5.53209 5.53525 5.58392 5.67407 5.73660 5.77638 5.80893 5.85272 5.91550 5.93884 6.06447 6.12792 6.25404 6.34397 6.55378 6.59395 6.63338 6.81617 6.97296 7.03622 7.19417 7.27065 7.35050 7.70429 7.93991 7.99557 8.64224 8.95204 9.64100 10.67627 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.002279 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.601367 B =12284.897530 C =13202.753471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.072 4.072 15 C 0.187 3.813 16 N -0.734 5.734 17 C 0.722 3.278 18 O -0.593 6.593 19 N -0.640 5.640 20 C 0.106 3.894 21 C -0.095 4.095 22 H 0.081 0.919 23 C -0.079 4.079 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.089 4.089 27 C -0.092 4.092 28 H 0.104 0.896 29 C 0.129 3.871 30 C -0.170 4.170 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.398 0.602 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.016 -17.338 14.784 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.213 4.213 14 C -0.073 4.073 15 C 0.063 3.937 16 N -0.389 5.389 17 C 0.424 3.576 18 O -0.472 6.472 19 N -0.379 5.379 20 C -0.017 4.017 21 C -0.114 4.114 22 H 0.099 0.901 23 C -0.116 4.116 24 C -0.172 4.172 25 C -0.172 4.172 26 C -0.126 4.126 27 C -0.111 4.111 28 H 0.122 0.878 29 C 0.006 3.994 30 C -0.190 4.190 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.315 -17.681 13.991 22.666 hybrid contribution 0.804 1.256 0.355 1.533 sum 3.119 -16.425 14.346 22.030 Atomic orbital electron populations 1.70041 1.05972 1.27756 1.45817 1.25296 0.95844 0.98856 0.96476 0.85712 0.78906 0.80045 0.78772 1.19834 1.20220 1.19187 1.21323 0.91791 0.80773 1.53046 0.89047 1.83985 1.34258 1.11404 1.78318 1.19326 0.90257 0.88063 0.92712 1.21242 0.93835 0.99074 1.10337 1.20743 0.98560 0.92245 0.97929 1.20485 0.93350 0.97125 1.10382 1.19281 0.93489 0.92872 1.01660 1.20006 0.99977 0.93466 0.80212 1.45270 1.63980 1.20624 1.09050 1.15433 0.78942 0.82267 0.81006 1.90915 1.57864 1.49529 1.48896 1.47678 1.64006 1.22570 1.03650 1.22205 0.98779 0.94982 0.85689 1.21269 1.00235 0.95520 0.94393 0.90067 1.19564 0.97843 0.99650 0.94523 1.21866 0.98700 0.96195 1.00419 1.21719 1.00669 0.97136 0.97662 1.20397 0.95911 0.99851 0.96402 1.22438 0.98474 0.95722 0.94473 0.87828 1.22200 0.97878 0.87185 0.92185 1.20094 0.99451 0.89797 1.09673 0.91952 0.85467 0.87295 0.87510 0.91025 0.91118 0.76727 0.91171 0.90499 0.90305 0.90372 0.87615 0.88116 0.90935 0.90463 0.91729 0.91276 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 9 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 10 C 0.15 3.50 6.65 -39.10 -0.26 3.24 16 11 C -0.23 -4.69 9.17 -39.40 -0.36 -5.06 16 12 C -0.08 -1.34 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.20 9.70 -39.53 -0.38 -3.58 16 14 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 15 C 0.19 2.88 5.80 -5.20 -0.03 2.85 16 16 N -0.73 -10.50 5.51 -66.42 -0.37 -10.87 16 17 C 0.72 11.01 8.49 -86.92 -0.74 10.27 16 18 O -0.59 -11.20 16.67 5.29 0.09 -11.12 16 19 N -0.64 -7.54 3.33 -175.34 -0.58 -8.12 16 20 C 0.11 0.98 5.56 -2.84 -0.02 0.96 16 21 C -0.10 -0.71 2.62 -91.07 -0.24 -0.94 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 23 C -0.08 -0.50 5.59 -29.89 -0.17 -0.66 16 24 C -0.15 -1.01 9.88 -36.05 -0.36 -1.37 16 25 C -0.15 -1.04 9.76 -36.30 -0.35 -1.39 16 26 C -0.09 -0.61 4.65 -28.57 -0.13 -0.74 16 27 C -0.09 -0.65 3.94 -88.36 -0.35 -1.00 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 C 0.13 1.26 5.97 -2.12 -0.01 1.25 16 30 C -0.17 -3.46 9.65 -39.39 -0.38 -3.84 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 37 H 0.40 5.19 6.98 -40.82 -0.28 4.90 16 38 H 0.07 0.63 7.63 -51.93 -0.40 0.24 16 39 H 0.08 0.71 7.36 -51.93 -0.38 0.33 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 42 H 0.11 0.61 8.06 -52.48 -0.42 0.18 16 43 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.64 7.02 -51.93 -0.36 0.27 16 46 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 48 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -32.24 388.60 -10.82 -43.06 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.02 Total: 8.15 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -4.53 Total: -13.00 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.19 Total: -43.11 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.24 -10.82 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096440246.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.324 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds