Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48502 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47059 * 299.99774 * 3 2 1 6 6 H 1.48503 * 109.47064 * 59.99996 * 3 2 1 7 7 C 1.38649 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00064 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00368 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00546 * 185.05887 * 9 7 2 11 11 C 1.38899 * 120.06426 * 354.44133 * 10 9 7 12 12 C 1.38081 * 119.93130 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.06522 * 359.74347 * 12 11 10 14 14 C 1.38278 * 120.13645 * 0.51623 * 13 12 11 15 15 C 1.50705 * 119.96220 * 179.76485 * 14 13 12 16 16 N 1.46499 * 109.46799 * 269.71750 * 15 14 13 17 17 C 1.34783 * 119.99774 * 179.97438 * 16 15 14 18 18 O 1.21588 * 120.00016 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99756 * 179.97438 * 17 16 15 20 20 C 1.48434 * 125.76733 * 359.69943 * 19 17 16 21 21 C 1.53093 * 103.82171 * 204.35163 * 20 19 17 22 22 H 1.08998 * 111.01071 * 77.54322 * 21 20 19 23 23 C 1.51984 * 116.05637 * 205.71454 * 21 20 19 24 24 C 1.51129 * 107.49568 * 164.77574 * 23 21 20 25 25 C 1.29774 * 124.36468 * 341.72050 * 24 23 21 26 26 C 1.49714 * 124.25357 * 358.52142 * 25 24 23 27 27 C 1.51874 * 108.22612 * 342.83682 * 26 25 24 28 28 H 1.09000 * 111.15601 * 292.90580 * 27 26 25 29 29 C 1.48023 * 125.76077 * 180.02562 * 19 17 16 30 30 C 1.38113 * 120.07276 * 359.48353 * 14 13 12 31 31 H 0.96998 * 120.00331 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.04069 * 0.04749 * 11 10 9 33 33 H 1.07997 * 119.97096 * 180.02562 * 12 11 10 34 34 H 1.08004 * 119.93294 * 180.25102 * 13 12 11 35 35 H 1.09000 * 109.47314 * 29.71998 * 15 14 13 36 36 H 1.08999 * 109.46778 * 149.71987 * 15 14 13 37 37 H 0.96996 * 120.00212 * 0.02562 * 16 15 14 38 38 H 1.09004 * 110.58315 * 323.00084 * 20 19 17 39 39 H 1.09002 * 110.58587 * 85.90064 * 20 19 17 40 40 H 1.09006 * 109.85204 * 284.27177 * 23 21 20 41 41 H 1.09000 * 109.85359 * 45.27602 * 23 21 20 42 42 H 1.08003 * 117.81751 * 161.74769 * 24 23 21 43 43 H 1.08000 * 117.85246 * 179.09678 * 25 24 23 44 44 H 1.09009 * 110.13400 * 222.73451 * 26 25 24 45 45 H 1.08991 * 108.83439 * 102.19130 * 26 25 24 46 46 H 1.09008 * 110.11642 * 301.85185 * 29 19 17 47 47 H 1.08997 * 110.11715 * 63.50475 * 29 19 17 48 48 H 1.07998 * 120.04309 * 180.27816 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4573 -3.4395 0.0916 12 6 4.2025 -4.5970 0.1992 13 6 3.5687 -5.8200 0.3261 14 6 2.1877 -5.8886 0.3349 15 6 1.5012 -7.2236 0.4681 16 7 1.2707 -7.7890 -0.8636 17 6 0.6662 -8.9868 -0.9917 18 8 0.3117 -9.5978 -0.0021 19 7 0.4537 -9.5068 -2.2168 20 6 0.8254 -8.8710 -3.5056 21 6 -0.1377 -9.5008 -4.5153 22 1 -1.1286 -9.0527 -4.4422 23 6 0.3403 -9.5423 -5.9574 24 6 -0.5477 -10.5119 -6.7027 25 6 -1.2922 -11.4095 -6.1332 26 6 -1.3563 -11.6368 -4.6548 27 6 -0.1427 -10.9803 -4.0203 28 1 0.7770 -11.4861 -4.3142 29 6 -0.1960 -10.8053 -2.5047 30 6 1.4367 -4.7344 0.2277 31 1 -0.4850 0.8400 -0.0004 32 1 3.9528 -2.4846 -0.0029 33 1 5.2813 -4.5471 0.1889 34 1 4.1537 -6.7236 0.4142 35 1 2.1309 -7.8999 1.0460 36 1 0.5464 -7.0920 0.9771 37 1 1.5539 -7.3018 -1.6531 38 1 0.6786 -7.7920 -3.4570 39 1 1.8573 -9.1070 -3.7657 40 1 0.2607 -8.5504 -6.4025 41 1 1.3747 -9.8839 -5.9949 42 1 -0.5635 -10.4542 -7.7810 43 1 -1.8981 -12.0391 -6.7679 44 1 -1.3543 -12.7054 -4.4391 45 1 -2.2680 -11.1819 -4.2681 46 1 0.3477 -11.6133 -2.0149 47 1 -1.2315 -10.7899 -2.1650 48 1 0.3581 -4.7881 0.2391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096440247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -12.319653 kcal Electronic energy + Delta-G solvation = -28667.490819 eV Core-core repulsion = 24688.158687 eV Total energy + Delta-G solvation = -3979.332132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.83370 -39.39953 -38.87243 -36.83475 -35.69874 -34.44786 -32.35023 -32.01713 -31.42175 -30.32923 -29.10781 -27.63033 -26.24209 -25.38751 -24.57066 -22.03517 -21.71615 -21.31147 -20.80311 -20.00198 -18.74316 -18.36392 -17.53507 -16.95095 -16.26150 -16.03499 -15.71815 -15.15498 -14.85993 -14.77073 -14.61097 -14.44725 -14.19314 -13.86146 -13.63891 -13.44387 -13.42792 -13.21886 -12.89695 -12.71365 -12.47426 -12.40803 -12.34915 -12.13751 -11.97257 -11.67076 -11.38889 -11.11278 -10.96245 -10.81207 -10.76201 -10.69365 -10.51069 -10.46973 -10.12908 -9.41293 -9.38379 -9.07757 -8.90513 -8.56804 -8.25525 -7.33449 -6.50019 -4.09525 1.84965 1.90458 2.25981 2.67212 3.08865 3.10536 3.15987 3.25894 3.81300 3.91681 4.03465 4.23552 4.37601 4.54111 4.63659 4.82899 4.91246 4.93687 4.99109 5.05088 5.06108 5.07630 5.25742 5.28425 5.33645 5.40892 5.48361 5.53147 5.55149 5.60478 5.64488 5.74168 5.78421 5.85224 5.89245 6.01109 6.05685 6.09190 6.25216 6.26815 6.54794 6.55321 6.59314 6.81612 6.97240 7.03120 7.19521 7.27107 7.35227 7.70429 7.94205 7.99437 8.64058 8.95468 9.64322 10.67850 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013841 B = 0.002128 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.548199 B =13157.446069 C =14235.431038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.072 4.072 15 C 0.186 3.814 16 N -0.734 5.734 17 C 0.722 3.278 18 O -0.593 6.593 19 N -0.642 5.642 20 C 0.107 3.893 21 C -0.105 4.105 22 H 0.090 0.910 23 C -0.077 4.077 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.077 4.077 27 C -0.105 4.105 28 H 0.087 0.913 29 C 0.138 3.862 30 C -0.170 4.170 31 H 0.270 0.730 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.398 0.602 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -20.063 -12.018 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.213 4.213 14 C -0.073 4.073 15 C 0.063 3.937 16 N -0.389 5.389 17 C 0.424 3.576 18 O -0.472 6.472 19 N -0.381 5.381 20 C -0.016 4.016 21 C -0.124 4.124 22 H 0.108 0.892 23 C -0.115 4.115 24 C -0.173 4.173 25 C -0.174 4.174 26 C -0.114 4.114 27 C -0.124 4.124 28 H 0.106 0.894 29 C 0.015 3.985 30 C -0.190 4.190 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.997 -20.252 -11.180 23.155 hybrid contribution 0.660 1.172 -0.513 1.439 sum 1.657 -19.080 -11.693 22.439 Atomic orbital electron populations 1.70044 1.05971 1.27653 1.45900 1.25299 0.95850 0.98869 0.96496 0.85644 0.79123 0.80337 0.78300 1.19088 1.20124 1.20096 1.21370 0.91817 0.80754 1.52936 0.88987 1.83983 1.34283 1.11405 1.78331 1.19325 0.90259 0.88067 0.92721 1.21244 0.93835 0.99082 1.10300 1.20748 0.98561 0.92260 0.97933 1.20489 0.93351 0.97130 1.10357 1.19278 0.93484 0.92843 1.01689 1.20008 0.99928 0.90959 0.82784 1.45270 1.64040 1.19687 1.09941 1.15433 0.78904 0.81282 0.81991 1.90916 1.58185 1.62091 1.35967 1.48042 1.64327 1.21751 1.04026 1.22031 0.98446 0.98018 0.83075 1.22199 1.00247 0.95723 0.94247 0.89168 1.20402 0.98896 0.99053 0.93119 1.22343 0.98327 0.96983 0.99637 1.22048 0.99996 0.99041 0.96273 1.20118 0.97527 1.01060 0.92737 1.22078 0.99814 0.96588 0.93953 0.89441 1.21467 0.98022 0.84753 0.94272 1.20093 0.99459 0.89829 1.09642 0.92001 0.85466 0.87291 0.87494 0.91105 0.91018 0.76743 0.90402 0.91157 0.90320 0.90226 0.87807 0.87784 0.90443 0.90287 0.91316 0.91475 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.14 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -10.72 9.49 30.88 0.29 -10.42 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 10 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 11 C -0.23 -4.68 9.17 -39.39 -0.36 -5.04 16 12 C -0.08 -1.34 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.18 9.70 -39.53 -0.38 -3.56 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 15 C 0.19 2.87 5.80 -5.19 -0.03 2.84 16 16 N -0.73 -10.41 5.51 -66.41 -0.37 -10.78 16 17 C 0.72 10.99 8.50 -86.91 -0.74 10.26 16 18 O -0.59 -11.21 16.68 5.29 0.09 -11.12 16 19 N -0.64 -7.55 3.37 -176.73 -0.60 -8.15 16 20 C 0.11 0.94 6.18 -2.93 -0.02 0.92 16 21 C -0.11 -0.78 2.65 -89.48 -0.24 -1.01 16 22 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 23 C -0.08 -0.47 5.76 -28.19 -0.16 -0.63 16 24 C -0.15 -0.96 9.77 -35.47 -0.35 -1.31 16 25 C -0.16 -0.96 9.73 -36.16 -0.35 -1.31 16 26 C -0.08 -0.47 5.61 -28.93 -0.16 -0.64 16 27 C -0.11 -0.75 2.55 -89.76 -0.23 -0.98 16 28 H 0.09 0.61 8.04 -51.93 -0.42 0.19 16 29 C 0.14 1.35 6.58 -3.38 -0.02 1.33 16 30 C -0.17 -3.46 9.65 -39.40 -0.38 -3.84 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.13 2.66 5.64 -52.49 -0.30 2.36 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 35 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.40 5.08 6.98 -40.82 -0.28 4.79 16 38 H 0.08 0.69 7.34 -51.93 -0.38 0.30 16 39 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.56 8.06 -52.48 -0.42 0.13 16 43 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.08 0.51 8.13 -51.93 -0.42 0.08 16 46 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 47 H 0.07 0.69 8.01 -51.93 -0.42 0.28 16 48 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -32.39 391.31 -10.79 -43.18 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.11 Total: 7.65 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -4.43 Total: -12.73 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.20 Total: -43.07 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.09 Total: -16.04 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.39 -10.79 -43.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096440247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.857 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds