Wall clock time and date at job start Tue Mar 31 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86807 * 119.99680 * 2 1 4 4 H 1.48499 * 109.47030 * 270.00240 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00273 * 3 2 1 6 6 H 1.48502 * 109.46979 * 150.00015 * 3 2 1 7 7 C 1.38654 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99862 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00264 * 180.02562 * 7 2 1 10 10 C 1.35747 * 116.99974 * 185.05387 * 9 7 2 11 11 C 1.38902 * 120.07188 * 354.44299 * 10 9 7 12 12 C 1.38078 * 119.93460 * 180.02562 * 11 10 9 13 13 C 1.38318 * 120.06792 * 359.74333 * 12 11 10 14 14 C 1.38285 * 120.13850 * 0.50927 * 13 12 11 15 15 C 1.50700 * 119.96679 * 179.76526 * 14 13 12 16 16 N 1.46502 * 109.47103 * 269.72338 * 15 14 13 17 17 C 1.34777 * 119.99688 * 179.97438 * 16 15 14 18 18 O 1.21581 * 120.00456 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99517 * 180.02562 * 17 16 15 20 20 C 1.48012 * 125.76689 * 359.69785 * 19 17 16 21 21 C 1.52689 * 106.14713 * 177.21873 * 20 19 17 22 22 H 1.09003 * 110.70920 * 270.78616 * 21 20 19 23 23 C 1.51871 * 115.75097 * 143.13157 * 21 20 19 24 24 C 1.51160 * 107.48236 * 193.75576 * 23 21 20 25 25 C 1.29770 * 124.29574 * 18.04057 * 24 23 21 26 26 C 1.51132 * 124.36634 * 0.92479 * 25 24 23 27 27 C 1.51990 * 107.48027 * 18.29031 * 26 25 24 28 28 H 1.08999 * 111.75223 * 67.45211 * 27 26 25 29 29 C 1.48453 * 125.76183 * 180.02562 * 19 17 16 30 30 C 1.38120 * 120.06410 * 359.49279 * 14 13 12 31 31 H 0.96997 * 120.00908 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.03067 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.96488 * 180.02562 * 12 11 10 34 34 H 1.07997 * 119.93361 * 180.25098 * 13 12 11 35 35 H 1.08997 * 109.46839 * 149.72542 * 15 14 13 36 36 H 1.08999 * 109.47143 * 29.72270 * 15 14 13 37 37 H 0.96996 * 120.00189 * 0.02562 * 16 15 14 38 38 H 1.09003 * 110.11435 * 296.52122 * 20 19 17 39 39 H 1.08993 * 110.11768 * 58.17379 * 20 19 17 40 40 H 1.09003 * 109.85561 * 313.25313 * 23 21 20 41 41 H 1.09000 * 109.85646 * 74.19448 * 23 21 20 42 42 H 1.07999 * 117.84536 * 198.05266 * 24 23 21 43 43 H 1.08010 * 117.81729 * 180.93261 * 25 24 23 44 44 H 1.08996 * 109.85793 * 258.79948 * 26 25 24 45 45 H 1.08997 * 109.85497 * 137.78012 * 26 25 24 46 46 H 1.08997 * 110.57538 * 274.06966 * 29 19 17 47 47 H 1.08997 * 110.57879 * 36.96942 * 29 19 17 48 48 H 1.08002 * 120.03210 * 180.27452 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4969 2.0466 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4403 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4690 -2.1360 -0.0005 9 8 3.3572 -1.2006 0.0000 10 6 3.9735 -2.4053 -0.1071 11 6 3.2236 -3.5744 -0.0947 12 6 3.8535 -4.7983 -0.2033 13 6 5.2295 -4.8607 -0.3297 14 6 5.9795 -3.6989 -0.3372 15 6 7.4788 -3.7717 -0.4698 16 7 8.0833 -3.8562 0.8620 17 6 9.4229 -3.9315 0.9905 18 8 10.1296 -3.9289 0.0012 19 7 9.9789 -4.0098 2.2158 20 6 9.2440 -4.0164 3.5005 21 6 10.2979 -4.1893 4.5917 22 1 10.4730 -5.2459 4.7945 23 6 10.0503 -3.4182 5.8764 24 6 11.3342 -3.4402 6.6739 25 6 12.4998 -3.7181 6.1757 26 6 12.7506 -4.0415 4.7209 27 6 11.5532 -3.5421 3.9291 28 1 11.4904 -2.4540 3.9350 29 6 11.4324 -4.0970 2.5049 30 6 5.3551 -2.4717 -0.2289 31 1 -0.4851 0.8399 0.0004 32 1 2.1488 -3.5262 0.0006 33 1 3.2708 -5.7076 -0.1942 34 1 5.7196 -5.8190 -0.4186 35 1 7.8424 -2.8785 -0.9778 36 1 7.7500 -4.6547 -1.0485 37 1 7.5195 -3.8586 1.6513 38 1 8.7143 -3.0731 3.6342 39 1 8.5408 -4.8487 3.5258 40 1 9.7766 -2.3891 5.6436 41 1 9.2516 -3.8938 6.4456 42 1 11.2776 -3.2096 7.7275 43 1 13.3472 -3.7184 6.8455 44 1 12.8551 -5.1190 4.5938 45 1 13.6555 -3.5382 4.3804 46 1 11.7689 -5.1330 2.4677 47 1 11.9997 -3.4833 1.8052 48 1 5.9410 -1.5644 -0.2392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096440248.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:12 Heat of formation + Delta-G solvation = -10.853397 kcal Electronic energy + Delta-G solvation = -28732.686873 eV Core-core repulsion = 24753.418323 eV Total energy + Delta-G solvation = -3979.268551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.86549 -39.50453 -38.97902 -37.01014 -35.71068 -34.52643 -32.45522 -32.04464 -31.47644 -30.40233 -29.37647 -27.63300 -26.28992 -25.33124 -24.61374 -22.08112 -21.83708 -21.34158 -20.70974 -20.06648 -18.79654 -18.34000 -17.73408 -17.06298 -16.35015 -15.96468 -15.79170 -15.31503 -15.01544 -14.83045 -14.75064 -14.33002 -14.17944 -13.86615 -13.75424 -13.51152 -13.42260 -13.19403 -12.95577 -12.76485 -12.58461 -12.49778 -12.29925 -12.22816 -12.10733 -11.94855 -11.46596 -11.18492 -10.94836 -10.89514 -10.77088 -10.76498 -10.55836 -10.23006 -10.17728 -9.47362 -9.43802 -9.13540 -8.93981 -8.63734 -8.35010 -7.49182 -6.47311 -4.14705 1.75887 1.87402 2.13958 2.61291 3.18244 3.19501 3.22644 3.36281 3.74712 4.02233 4.16659 4.18768 4.34169 4.44843 4.60579 4.66428 4.76512 4.86009 4.95517 5.00165 5.01742 5.02821 5.12127 5.22093 5.30504 5.37208 5.42955 5.45308 5.49029 5.56459 5.58476 5.66024 5.70968 5.75184 5.81339 5.93639 5.99805 6.03112 6.14620 6.22434 6.41631 6.51325 6.51919 6.67060 6.94460 7.00624 7.11465 7.19518 7.48726 7.72086 7.93015 7.96519 8.57488 8.87609 9.48693 10.60088 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.002274 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.613356 B =12311.915907 C =13385.516187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.216 6.216 10 C 0.156 3.844 11 C -0.212 4.212 12 C -0.078 4.078 13 C -0.185 4.185 14 C -0.074 4.074 15 C 0.186 3.814 16 N -0.735 5.735 17 C 0.722 3.278 18 O -0.593 6.593 19 N -0.642 5.642 20 C 0.106 3.894 21 C -0.103 4.103 22 H 0.088 0.912 23 C -0.078 4.078 24 C -0.154 4.154 25 C -0.157 4.157 26 C -0.076 4.076 27 C -0.108 4.108 28 H 0.090 0.910 29 C 0.136 3.864 30 C -0.171 4.171 31 H 0.280 0.720 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.398 0.602 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.931 -9.370 11.950 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.104 3.896 11 C -0.231 4.231 12 C -0.096 4.096 13 C -0.204 4.204 14 C -0.075 4.075 15 C 0.063 3.937 16 N -0.390 5.390 17 C 0.424 3.576 18 O -0.472 6.472 19 N -0.382 5.382 20 C -0.017 4.017 21 C -0.122 4.122 22 H 0.107 0.893 23 C -0.116 4.116 24 C -0.172 4.172 25 C -0.175 4.175 26 C -0.113 4.113 27 C -0.127 4.127 28 H 0.109 0.891 29 C 0.013 3.987 30 C -0.190 4.190 31 H 0.090 0.910 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 22.273 -8.986 11.121 26.467 hybrid contribution -0.340 0.658 0.520 0.905 sum 21.933 -8.327 11.640 26.190 Atomic orbital electron populations 1.69635 1.05574 1.28591 1.47723 1.24466 0.95024 0.98860 0.95581 0.86186 0.80297 0.81403 0.79049 1.19819 1.20748 1.18374 1.20757 0.76800 0.96647 1.52445 0.87595 1.83575 1.22670 1.25581 1.80248 1.19058 0.91546 0.85640 0.93379 1.21366 1.01283 0.91919 1.08534 1.20805 0.94153 0.96840 0.97830 1.20560 0.93857 0.96771 1.09259 1.19279 0.93395 0.92981 1.01860 1.20004 0.88418 1.02427 0.82844 1.45260 1.04618 1.79173 1.09913 1.15442 0.82261 0.77864 0.82029 1.90915 1.61381 1.58919 1.35959 1.48062 1.07465 1.78692 1.03963 1.21788 0.94862 1.01992 0.83014 1.22041 0.95150 1.00712 0.94258 0.89343 1.20421 0.96085 1.00699 0.94368 1.22352 0.94165 1.00949 0.99698 1.22336 0.97407 1.01189 0.96580 1.20390 0.97542 1.01406 0.91995 1.22318 0.95619 1.00933 0.93819 0.89149 1.21837 0.80626 1.00884 0.95374 1.20087 0.91960 0.97268 1.09728 0.90972 0.84836 0.86973 0.87279 0.91010 0.91005 0.76734 0.91171 0.91177 0.90123 0.90375 0.87746 0.87816 0.90234 0.90484 0.91522 0.90236 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.89 13.96 55.48 0.77 -24.12 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.32 28.62 -169.99 -4.86 16.46 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.39 -10.73 9.95 30.89 0.31 -10.43 16 8 H 0.11 2.96 5.44 -52.49 -0.29 2.67 16 9 O -0.22 -5.52 8.59 0.07 0.00 -5.52 16 10 C 0.16 3.44 6.65 -39.11 -0.26 3.18 16 11 C -0.21 -4.33 9.17 -39.39 -0.36 -4.69 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.19 -2.90 9.70 -39.53 -0.38 -3.28 16 14 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 15 C 0.19 2.69 5.80 -5.19 -0.03 2.66 16 16 N -0.73 -9.83 5.51 -66.41 -0.37 -10.20 16 17 C 0.72 10.48 8.50 -86.91 -0.74 9.74 16 18 O -0.59 -10.78 16.63 5.29 0.09 -10.70 16 19 N -0.64 -7.17 3.37 -176.58 -0.60 -7.76 16 20 C 0.11 0.88 5.85 -3.37 -0.02 0.86 16 21 C -0.10 -0.68 2.54 -89.75 -0.23 -0.91 16 22 H 0.09 0.58 8.02 -51.93 -0.42 0.16 16 23 C -0.08 -0.47 5.71 -28.23 -0.16 -0.63 16 24 C -0.15 -0.91 9.78 -35.46 -0.35 -1.26 16 25 C -0.16 -0.91 9.77 -35.47 -0.35 -1.25 16 26 C -0.08 -0.42 5.72 -28.19 -0.16 -0.58 16 27 C -0.11 -0.75 2.69 -89.36 -0.24 -0.99 16 28 H 0.09 0.70 8.07 -51.93 -0.42 0.29 16 29 C 0.14 1.25 6.51 -2.80 -0.02 1.23 16 30 C -0.17 -3.22 9.65 -39.40 -0.38 -3.60 16 31 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.40 4.78 7.45 -40.82 -0.30 4.47 16 38 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 39 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 40 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.10 0.50 8.06 -52.48 -0.42 0.08 16 44 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 47 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 48 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -31.27 390.98 -10.66 -41.93 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.18 Total: 5.75 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.41 Total: -11.74 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.19 Total: -42.08 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.09 Total: -16.21 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.27 -10.66 -41.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096440248.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.076 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds