Wall clock time and date at job start Tue Mar 31 2020 07:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21288 * 119.99672 * 2 1 4 4 N 1.34774 * 120.00046 * 180.02562 * 2 1 3 5 5 C 1.39873 * 120.00068 * 184.53271 * 4 2 1 6 6 C 1.35252 * 120.00104 * 123.10241 * 5 4 2 7 7 C 1.47123 * 120.00496 * 351.99936 * 6 5 4 8 8 C 1.39864 * 120.16634 * 337.54610 * 7 6 5 9 9 C 1.37886 * 119.81867 * 179.73776 * 8 7 6 10 10 C 1.38410 * 120.17433 * 0.51485 * 9 8 7 11 11 C 1.38397 * 120.35124 * 359.76004 * 10 9 8 12 12 C 1.37895 * 120.17545 * 359.97438 * 11 10 9 13 13 C 1.47027 * 119.99523 * 303.10148 * 5 4 2 14 14 O 1.21654 * 120.00286 * 89.17210 * 13 5 4 15 15 N 1.34779 * 120.00063 * 269.17342 * 13 5 4 16 16 C 1.46966 * 120.59668 * 174.90011 * 15 13 5 17 17 C 1.53375 * 108.63305 * 235.24476 * 16 15 13 18 18 N 1.46965 * 108.63273 * 310.57600 * 17 16 15 19 19 C 1.36943 * 120.58932 * 235.20394 * 18 17 16 20 20 H 1.07999 * 119.99645 * 349.91487 * 19 18 17 21 21 C 1.38806 * 119.99866 * 169.64221 * 19 18 17 22 22 N 1.31621 * 120.00285 * 146.70433 * 21 19 18 23 23 Si 1.86803 * 120.00034 * 326.70618 * 21 19 18 24 24 H 1.48502 * 109.47265 * 96.32007 * 23 21 19 25 25 H 1.48504 * 109.47133 * 216.32035 * 23 21 19 26 26 H 1.48503 * 109.46934 * 336.31966 * 23 21 19 27 27 C 1.46960 * 118.81714 * 55.47945 * 18 17 16 28 28 C 1.46975 * 120.59226 * 354.91458 * 15 13 5 29 29 H 1.09009 * 109.46966 * 184.99588 * 1 2 3 30 30 H 1.08994 * 109.46983 * 304.98878 * 1 2 3 31 31 H 1.09000 * 109.47000 * 64.99678 * 1 2 3 32 32 H 0.97005 * 119.99949 * 4.52966 * 4 2 1 33 33 H 1.08003 * 119.99527 * 172.00390 * 6 5 4 34 34 H 1.07998 * 120.09357 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.91543 * 180.24985 * 9 8 7 36 36 H 1.07997 * 119.82285 * 179.74124 * 10 9 8 37 37 H 1.08003 * 119.91939 * 180.02562 * 11 10 9 38 38 H 1.07996 * 120.08963 * 180.02562 * 12 11 10 39 39 H 1.08995 * 109.60932 * 115.49906 * 16 15 13 40 40 H 1.08995 * 109.74829 * 355.06983 * 16 15 13 41 41 H 1.08998 * 109.60636 * 190.82602 * 17 16 15 42 42 H 1.08997 * 109.75050 * 70.40314 * 17 16 15 43 43 H 0.96994 * 120.00030 * 179.97438 * 22 21 19 44 44 H 1.09004 * 109.60962 * 64.26327 * 27 18 17 45 45 H 1.08995 * 109.61071 * 184.77633 * 27 18 17 46 46 H 1.08999 * 109.60770 * 244.49772 * 28 15 13 47 47 H 1.08999 * 109.60717 * 4.84034 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5764 -1.1691 0.0952 6 6 4.1848 -1.8484 1.0940 7 6 3.3832 -2.4373 2.1781 8 6 2.1078 -1.9373 2.4604 9 6 1.3605 -2.4981 3.4745 10 6 1.8736 -3.5460 4.2191 11 6 3.1370 -4.0425 3.9496 12 6 3.8947 -3.4962 2.9352 13 6 4.3818 -0.4327 -0.8900 14 8 4.6617 0.7352 -0.6960 15 7 4.8099 -1.0514 -2.0082 16 6 5.5195 -0.3007 -3.0536 17 6 4.7845 -0.5003 -4.3848 18 7 4.5497 -1.9378 -4.5807 19 6 4.9840 -2.5663 -5.7172 20 1 5.3560 -1.9844 -6.5475 21 6 4.9515 -3.9515 -5.7998 22 7 4.7192 -4.5367 -6.9557 23 14 5.2374 -4.9854 -4.2704 24 1 3.9296 -5.3715 -3.6823 25 1 5.9968 -6.2085 -4.6346 26 1 6.0130 -4.1980 -3.2786 27 6 3.8353 -2.6874 -3.5379 28 6 4.5752 -2.4890 -2.2042 29 1 -0.3633 -1.0239 0.0895 30 1 -0.3633 0.5893 0.8419 31 1 -0.3633 0.4344 -0.9314 32 1 1.6982 -2.0059 -0.0672 33 1 5.2592 -1.9586 1.0958 34 1 1.7079 -1.1168 1.8833 35 1 0.3739 -2.1159 3.6912 36 1 1.2851 -3.9782 5.0147 37 1 3.5304 -4.8607 4.5347 38 1 4.8802 -3.8850 2.7258 39 1 6.5409 -0.6711 -3.1405 40 1 5.5351 0.7591 -2.7996 41 1 5.3951 -0.1146 -5.2012 42 1 3.8304 0.0263 -4.3614 43 1 4.6968 -5.5046 -7.0134 44 1 2.8150 -2.3133 -3.4525 45 1 3.8189 -3.7465 -3.7949 46 1 5.5295 -3.0151 -2.2307 47 1 3.9672 -2.8752 -1.3861 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096443693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:11 Heat of formation + Delta-G solvation = 44.314294 kcal Electronic energy + Delta-G solvation = -30964.491817 eV Core-core repulsion = 26922.189606 eV Total energy + Delta-G solvation = -4042.302211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.91032 -39.35242 -39.02316 -37.12649 -35.87019 -33.94872 -32.80931 -31.68089 -31.12619 -30.96010 -30.43494 -28.77807 -27.20470 -24.60298 -23.30323 -23.28836 -22.81131 -21.53738 -21.36959 -20.16121 -18.83345 -17.65364 -17.37287 -16.90662 -16.51839 -16.32110 -15.98723 -15.48163 -15.37456 -15.02096 -14.62105 -14.43426 -14.17754 -13.93439 -13.75673 -13.59492 -13.55403 -13.23280 -12.97620 -12.89481 -12.78727 -12.61670 -12.43584 -12.06525 -12.03012 -11.54624 -11.34462 -11.26058 -11.04879 -10.81115 -10.49405 -10.32809 -10.14782 -10.04047 -9.87286 -9.44963 -9.27470 -9.14346 -8.81577 -8.29395 -8.20534 -7.22012 -6.07455 -3.24853 0.49480 1.14304 1.89271 2.37998 2.53201 3.12108 3.15948 3.32548 3.37190 3.42314 3.61353 4.33513 4.40706 4.58226 4.60296 4.69409 4.75881 4.83615 4.90153 4.95944 5.14512 5.16409 5.17162 5.23954 5.40331 5.44362 5.48005 5.57616 5.64607 5.69614 5.75495 5.79276 5.85813 5.98396 6.05068 6.11826 6.16194 6.23266 6.31425 6.37520 6.46228 6.47587 6.66221 6.70041 6.82213 7.11848 7.64743 7.71344 8.00194 8.16920 8.36241 8.79120 9.61539 9.95010 11.06761 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011712 B = 0.003911 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.200729 B = 7158.240224 C = 8312.428138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.498 3.502 3 O -0.499 6.499 4 N -0.674 5.674 5 C 0.103 3.897 6 C -0.104 4.104 7 C -0.053 4.053 8 C -0.117 4.117 9 C -0.122 4.122 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.103 4.103 13 C 0.547 3.453 14 O -0.512 6.512 15 N -0.591 5.591 16 C 0.091 3.909 17 C 0.140 3.860 18 N -0.604 5.604 19 C -0.265 4.265 20 H 0.093 0.907 21 C 0.021 3.979 22 N -0.888 5.888 23 Si 0.857 3.143 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.261 1.261 27 C 0.117 3.883 28 C 0.073 3.927 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.413 0.587 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.263 0.737 44 H 0.036 0.964 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 0.913 20.864 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.286 3.714 3 O -0.370 6.370 4 N -0.329 5.329 5 C 0.008 3.992 6 C -0.125 4.125 7 C -0.053 4.053 8 C -0.135 4.135 9 C -0.140 4.140 10 C -0.136 4.136 11 C -0.139 4.139 12 C -0.121 4.121 13 C 0.331 3.669 14 O -0.386 6.386 15 N -0.325 5.325 16 C -0.033 4.033 17 C 0.013 3.987 18 N -0.327 5.327 19 C -0.392 4.392 20 H 0.111 0.889 21 C -0.178 4.178 22 N -0.530 5.530 23 Si 0.689 3.311 24 H -0.218 1.218 25 H -0.233 1.233 26 H -0.187 1.187 27 C -0.009 4.009 28 C -0.052 4.052 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.253 0.747 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.411 2.238 20.782 22.177 hybrid contribution 0.034 -1.472 0.793 1.673 sum -7.377 0.766 21.576 22.815 Atomic orbital electron populations 1.21893 0.90720 1.04572 1.05812 1.21110 0.90909 0.83349 0.76020 1.90911 1.70094 1.30466 1.45575 1.43900 1.04180 1.10158 1.74694 1.19596 0.83807 0.99459 0.96379 1.22178 0.99569 0.99157 0.91627 1.18851 0.94208 0.96287 0.95951 1.21927 0.93953 0.99758 0.97894 1.21129 1.00021 0.96882 0.95939 1.21270 0.95860 0.96967 0.99509 1.21087 0.94765 1.00191 0.97862 1.21374 1.00029 0.95434 0.95268 1.18317 0.80356 0.86712 0.81467 1.90843 1.56554 1.15505 1.75712 1.48035 1.56333 1.10022 1.18061 1.22318 0.95880 0.96754 0.88369 1.21313 0.97636 0.85403 0.94334 1.44358 1.64513 1.04114 1.19758 1.18939 1.39397 0.90103 0.90721 0.88924 1.24890 1.00714 0.96264 0.95982 1.70038 1.47972 1.09868 1.25126 0.87444 0.77589 0.80282 0.85801 1.21837 1.23261 1.18693 1.21591 0.94213 0.97986 0.87109 1.22920 1.02163 0.80486 0.99617 0.90237 0.88390 0.88185 0.74740 0.84222 0.84901 0.85958 0.86142 0.85890 0.85595 0.91356 0.89500 0.90484 0.94883 0.92758 0.94585 0.90237 0.89832 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.36 36.01 0.37 -0.92 16 2 C 0.50 6.40 6.20 -10.98 -0.07 6.34 16 3 O -0.50 -9.14 15.34 -12.89 -0.20 -9.34 16 4 N -0.67 -7.98 2.91 -8.59 -0.02 -8.00 16 5 C 0.10 1.49 3.55 -81.69 -0.29 1.20 16 6 C -0.10 -1.29 9.38 -37.04 -0.35 -1.64 16 7 C -0.05 -0.57 5.75 -105.08 -0.60 -1.18 16 8 C -0.12 -1.17 8.45 -39.10 -0.33 -1.50 16 9 C -0.12 -1.01 10.03 -39.65 -0.40 -1.41 16 10 C -0.12 -0.93 10.04 -39.46 -0.40 -1.33 16 11 C -0.12 -1.00 10.03 -39.65 -0.40 -1.40 16 12 C -0.10 -0.97 9.80 -39.10 -0.38 -1.36 16 13 C 0.55 9.88 6.62 -12.70 -0.08 9.80 16 14 O -0.51 -11.04 15.22 -13.21 -0.20 -11.24 16 15 N -0.59 -10.61 2.95 -173.62 -0.51 -11.12 16 16 C 0.09 1.64 6.58 -3.59 -0.02 1.62 16 17 C 0.14 2.75 6.67 -3.59 -0.02 2.73 16 18 N -0.60 -13.86 2.91 -171.77 -0.50 -14.36 16 19 C -0.26 -7.09 10.07 -15.06 -0.15 -7.24 16 20 H 0.09 2.63 7.97 -52.49 -0.42 2.21 16 21 C 0.02 0.57 5.25 -17.43 -0.09 0.48 16 22 N -0.89 -26.22 13.97 55.49 0.78 -25.44 16 23 Si 0.86 20.23 24.25 -169.99 -4.12 16.11 16 24 H -0.29 -6.53 6.60 56.52 0.37 -6.15 16 25 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.26 -5.75 4.75 56.52 0.27 -5.48 16 27 C 0.12 2.43 5.57 -3.37 -0.02 2.41 16 28 C 0.07 1.28 5.99 -3.36 -0.02 1.26 16 29 H 0.08 0.38 7.94 -51.92 -0.41 -0.03 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.41 3.66 8.20 -40.82 -0.33 3.32 16 33 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.13 1.35 4.27 -52.49 -0.22 1.12 16 35 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.56 7.03 -51.93 -0.36 1.19 16 41 H 0.08 1.45 7.87 -51.93 -0.41 1.04 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.79 2.30 -51.93 -0.12 1.67 16 46 H 0.08 1.57 5.61 -51.93 -0.29 1.27 16 47 H 0.07 1.07 6.16 -51.93 -0.32 0.75 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -35.69 373.00 -8.84 -44.53 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.42 Total: 5.38 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -3.26 Total: 7.86 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.26 Total: -58.93 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.40 Total: -20.58 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.12 Total: 16.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.69 -8.84 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096443693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.842 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds